genome.fa.s8397.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008397.1 Hibiscus syriacus cultivar Beakdansim tig00111166_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2560905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  6  of  13  ( 1496 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1036957--1037003	3	16.0	3	82	4	60	65	0	0	34	0.93
1036943--1037003	26	2.3	27	83	8	81	62	0	0	37	0.96
1041990--1042032	3	14.7	3	80	4	52	60	0	0	39	0.97
1042191--1042394	75	2.7	76	92	1	329	34	22	20	22	1.97
1042326--1042439	45	2.5	45	87	5	149	31	23	22	21	1.98
1042251--1042514	120	2.2	120	91	4	415	33	22	21	22	1.97
1042190--1042590	196	2.0	196	92	0	660	34	22	20	22	1.97
1042373--1043022	151	4.3	151	93	1	1054	34	22	20	22	1.97
1042373--1043022	76	8.6	76	94	1	1040	34	22	20	22	1.97
1043878--1043932	22	2.5	22	93	0	101	40	14	10	34	1.81
1045276--1045452	76	2.3	75	79	3	194	27	20	18	33	1.96
1046403--1046618	114	1.9	114	90	1	344	30	20	16	32	1.95
1053697--1053734	17	2.3	17	90	4	60	71	2	0	26	1.00
1054931--1054985	26	2.1	26	93	0	92	9	18	30	41	1.81
1054992--1055053	3	20.7	3	80	6	72	59	0	0	40	0.97
1065255--1065551	149	2.0	148	97	2	562	39	17	14	28	1.89
1081276--1081370	21	4.5	21	90	0	136	28	28	21	22	1.99
1081379--1081608	21	10.6	21	79	9	194	23	21	25	30	1.99
1081534--1081620	42	2.1	42	91	0	138	19	24	25	31	1.98
1081727--1081765	6	6.5	6	93	0	51	25	51	23	0	1.49
1081727--1081765	12	3.2	12	88	0	60	25	51	23	0	1.49
1082199--1082380	42	4.3	42	84	8	237	35	23	20	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1082227--1082380	63	2.4	63	84	8	231	35	24	20	20	1.96
1082199--1082385	21	8.9	21	79	12	156	34	22	20	21	1.97
1085928--1085961	17	2.0	17	100	0	68	41	29	0	29	1.57
1093491--1093549	29	2.0	29	100	0	118	49	16	10	23	1.77
1095500--1095532	2	17.0	2	93	6	59	48	0	0	51	1.00
1095604--1095629	13	2.0	13	100	0	52	38	7	7	46	1.61
1095651--1095895	36	7.1	37	73	15	131	43	5	5	45	1.51
1095771--1095895	33	3.6	35	77	12	107	41	4	7	46	1.52
1095916--1095961	6	7.7	6	79	18	51	15	0	2	82	0.76
1095907--1095963	29	2.0	29	82	6	71	15	3	1	78	0.96
1095916--1095971	29	1.9	29	85	7	78	14	1	3	80	0.93
1098262--1098359	48	2.0	48	92	3	162	18	23	11	46	1.81
1103350--1103407	23	2.6	21	74	12	53	36	0	3	60	1.14
1109064--1109123	29	2.1	30	84	6	79	16	20	16	46	1.84
1117245--1117285	8	5.2	8	82	5	57	34	0	29	36	1.58
1117353--1117830	126	3.8	126	98	0	922	22	25	19	32	1.97
1117353--1117830	251	1.9	252	98	0	922	22	25	19	32	1.97
1118218--1118311	27	3.0	34	73	20	112	40	3	4	52	1.37
1118218--1118311	28	3.2	28	83	11	100	40	3	4	52	1.37
1118830--1118923	21	4.5	21	92	5	129	20	26	35	18	1.95
1120697--1120771	31	2.4	33	77	11	84	60	1	0	38	1.06
1120694--1120782	34	2.7	31	81	6	97	59	2	0	38	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1121224--1121261	19	2.0	19	100	0	76	47	21	15	15	1.82
1125170--1125387	40	5.4	39	84	5	249	37	24	17	20	1.94
1125193--1125383	20	9.4	20	77	4	204	38	24	17	19	1.93
1125944--1126022	20	3.9	21	86	5	94	51	17	18	11	1.75
1125944--1126065	20	6.5	19	75	13	92	49	21	18	10	1.78
1126090--1126145	20	2.8	20	84	10	87	14	25	21	39	1.91
1129454--1129489	14	2.6	14	95	0	63	33	0	22	44	1.53
1129596--1129675	33	2.4	33	91	0	124	46	20	21	12	1.83
1129596--1129654	19	3.4	19	73	22	74	45	16	22	15	1.84
1129685--1129851	33	4.8	33	78	11	165	11	22	20	44	1.84
1129681--1129851	19	9.7	19	67	20	104	11	22	20	45	1.84
1129775--1129801	14	1.9	14	100	0	54	7	14	25	51	1.68
1129824--1129897	20	3.7	20	67	16	53	21	18	24	35	1.96
1132358--1132411	24	2.2	24	93	0	90	40	20	18	20	1.91
1132358--1132425	24	2.8	24	84	0	64	38	20	17	23	1.93
1133273--1133399	20	6.3	20	87	1	191	20	18	20	40	1.92
1133252--1133361	40	2.7	39	85	10	118	21	19	20	38	1.94
1133273--1133399	61	2.1	60	89	1	191	20	18	20	40	1.92
1133396--1133441	21	2.2	21	84	0	56	39	17	26	17	1.91
1135729--1135804	35	2.2	35	88	4	109	38	18	15	27	1.91
1138267--1138319	21	2.5	21	87	0	79	20	24	18	35	1.95
1138309--1138382	20	3.7	20	75	10	87	37	18	20	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1139256--1139309	24	2.2	24	93	0	90	20	18	20	40	1.91
1141718--1141809	20	4.6	20	87	2	132	35	25	19	19	1.95
1141915--1141968	14	3.5	14	73	22	54	11	24	20	44	1.83
1141894--1141977	33	2.5	33	90	1	123	11	21	19	47	1.81
1142095--1142131	14	2.6	14	86	0	56	48	21	0	29	1.50
1143484--1143576	42	2.2	42	80	3	107	22	17	39	20	1.92
1144055--1144121	20	3.3	20	89	0	89	35	20	17	25	1.95
1144168--1144251	20	4.2	20	93	0	132	21	20	20	38	1.94
1144130--1144324	34	5.4	39	72	18	138	18	20	19	41	1.91
1146138--1146207	20	3.5	20	90	0	86	41	25	17	15	1.89
1146583--1146633	22	2.3	22	89	0	75	23	11	39	25	1.89
1146576--1146639	22	2.9	21	83	4	74	23	14	37	25	1.92
1146818--1146950	20	6.6	20	77	3	149	21	21	19	38	1.94
1146818--1146950	41	3.3	41	89	1	196	21	21	19	38	1.94
1146818--1146950	61	2.2	61	80	2	151	21	21	19	38	1.94
1146947--1146992	21	2.2	21	88	0	65	41	17	23	17	1.90
1147358--1147408	23	2.3	22	86	6	68	58	0	0	41	0.98
1147362--1147415	22	2.4	22	82	11	65	57	0	0	42	0.98
1147800--1147835	3	11.7	3	94	5	63	0	33	0	66	0.92
1156882--1157556	336	2.0	337	99	0	1325	33	15	18	32	1.93
1160844--1160992	3	49.7	3	89	0	226	61	0	4	33	1.17
1161246--1161986	113	6.6	111	91	3	1060	29	19	14	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1162747--1163433	81	8.5	81	97	0	1241	34	23	13	28	1.92
1164447--1164495	1	49.0	1	83	0	62	0	8	0	91	0.41
1164431--1164498	21	3.4	19	86	11	91	0	14	0	85	0.60
1164438--1164479	19	2.2	19	86	0	57	0	16	0	83	0.65
1164431--1164498	10	6.7	10	83	9	93	0	14	0	85	0.60
1175100--1175136	15	2.7	15	88	12	53	62	8	5	24	1.44
1177337--1177488	3	50.7	3	89	0	232	61	0	4	33	1.16
1179325--1179368	19	2.3	19	88	4	61	27	4	4	63	1.33
1179331--1179369	19	2.0	20	95	5	71	30	5	0	64	1.15
1180491--1180579	32	2.7	33	84	1	117	26	30	30	12	1.93
1182408--1182445	15	2.5	15	95	0	67	47	10	13	28	1.76
1182602--1182660	20	3.0	20	80	9	86	27	28	22	22	1.99
1188882--1188940	20	3.0	20	82	9	86	28	28	20	22	1.98
1189555--1189605	19	2.7	19	100	0	102	21	31	17	29	1.96
1190858--1191037	90	2.0	93	88	4	276	45	6	11	37	1.65
1196994--1197064	10	6.7	10	73	23	65	25	38	26	9	1.87
1196997--1197024	14	2.0	14	100	0	56	21	42	28	7	1.79
1197011--1197064	20	2.7	20	97	0	99	25	37	27	9	1.87
1197011--1197064	10	5.4	10	79	16	67	25	37	27	9	1.87
1197073--1197125	23	2.3	24	80	9	65	32	24	32	11	1.91
1197240--1197279	16	2.4	18	80	16	50	57	0	30	12	1.36
1197598--1197686	3	29.7	3	90	0	142	34	3	0	61	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1197703--1197744	20	2.2	19	86	4	57	71	0	0	28	0.86
1197679--1197737	29	2.0	28	87	9	82	62	1	0	35	1.05
1198197--1198248	18	2.8	18	80	8	52	63	15	21	0	1.31
1199203--1199249	25	2.0	25	84	12	64	40	0	0	59	0.97
1199405--1199457	17	3.1	18	72	10	56	54	0	5	39	1.24
1201883--1201956	22	3.4	22	90	0	112	36	12	12	39	1.80
1202391--1203451	112	9.4	113	94	0	1729	37	12	20	29	1.90
1202391--1203451	225	4.7	225	93	1	1727	37	12	20	29	1.90
1203856--1204040	76	2.4	76	95	0	334	20	23	21	35	1.96
1204167--1204207	3	14.0	3	80	14	50	36	0	0	63	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13