genome.fa.s8397.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008397.1 Hibiscus syriacus cultivar Beakdansim tig00111166_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2560905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1496 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2431650--2431772	36	3.4	34	79	11	120	27	18	13	39	1.89
2431669--2431784	36	3.2	36	91	1	178	28	19	13	37	1.90
2431701--2431763	21	3.3	20	66	25	55	26	19	11	42	1.84
2431702--2431886	101	1.8	101	88	1	280	27	20	13	38	1.90
2431669--2431922	138	1.8	138	88	1	384	27	19	13	39	1.89
2431803--2431959	73	2.2	73	89	0	233	26	17	14	41	1.88
2431803--2431959	37	4.3	36	86	2	215	26	17	14	41	1.88
2432407--2432741	5	67.0	5	89	9	485	39	0	0	60	0.97
2439147--2439209	2	33.0	2	78	15	53	41	3	0	55	1.16
2439372--2439398	2	13.5	2	100	0	54	48	0	0	51	1.00
2439397--2439482	40	2.2	37	80	13	93	17	4	2	75	1.08
2439475--2439560	24	4.4	19	74	23	65	16	10	0	73	1.10
2439413--2439567	14	11.8	13	68	25	55	15	8	1	74	1.11
2439461--2439562	42	2.5	41	79	19	115	15	9	0	74	1.06
2439441--2439529	9	9.2	9	72	25	67	14	10	0	75	1.05
2439422--2439562	10	14.1	9	67	25	54	15	7	1	75	1.10
2439559--2439588	13	2.3	13	100	0	60	26	6	0	66	1.16
2441213--2441250	14	2.6	14	84	15	51	68	0	2	28	1.03
2449214--2449489	140	2.0	140	86	1	383	45	7	13	33	1.72
2453264--2453296	13	2.4	14	90	5	50	66	0	6	27	1.15
2454750--2454794	2	22.5	2	100	0	90	51	0	0	48	1.00
2470313--2470366	24	2.2	24	100	0	108	46	9	11	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2472358--2472686	163	2.0	164	99	0	651	44	9	12	34	1.73
2477837--2477900	27	2.4	27	82	15	71	62	4	6	26	1.39
2508950--2508982	3	11.3	3	87	6	50	66	0	0	33	0.92
2508945--2508982	14	2.9	13	85	11	51	63	0	0	36	0.95
2509362--2510044	122	5.7	122	83	6	833	26	17	14	41	1.88
2509851--2509895	23	1.9	23	82	13	56	15	26	6	51	1.68
2510085--2510211	36	3.5	35	66	9	94	38	13	18	29	1.89
2510075--2510165	36	2.5	36	72	1	92	36	15	19	28	1.92
2510075--2510211	73	1.9	73	90	6	224	38	13	18	29	1.89
2515054--2515120	32	2.1	32	88	5	100	19	13	20	46	1.83
2515572--2515634	8	8.0	8	77	8	67	1	17	0	80	0.78
2515572--2515641	25	2.8	26	83	10	85	1	20	0	78	0.83
2518424--2518487	6	10.7	6	98	0	119	51	1	15	31	1.53
2520032--2520064	17	1.9	17	88	11	50	72	0	0	27	0.85
2520026--2520075	23	2.2	22	78	3	55	72	2	0	26	0.96
2520038--2520112	29	2.6	30	83	10	95	62	2	4	30	1.27
2520041--2520139	29	3.5	28	77	12	87	61	2	6	30	1.31
2522283--2522314	3	10.7	3	100	0	64	68	0	0	31	0.90
2533685--2533973	124	2.3	124	90	0	443	26	13	24	35	1.92
2533933--2534166	125	1.9	126	89	0	371	26	13	21	38	1.90
2533937--2534159	60	3.6	60	83	5	284	26	13	21	38	1.91
2535953--2536004	6	8.5	6	77	12	52	1	3	9	84	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2535946--2536016	31	2.4	30	86	11	101	1	8	7	83	0.88
2537989--2538050	32	1.9	32	83	6	81	51	8	19	20	1.72
2539118--2539157	20	2.1	19	90	9	64	75	0	10	15	1.05
2539118--2539157	19	2.0	20	95	4	73	75	0	10	15	1.05
2539152--2539177	10	2.6	10	100	0	52	69	0	7	23	1.14
2540498--2540581	23	3.7	23	90	0	123	28	27	26	17	1.98
2542253--2542394	65	2.2	63	82	8	171	26	23	17	31	1.97
2543824--2543877	12	4.6	12	74	4	56	11	14	46	27	1.79
2543875--2543935	24	2.6	25	78	17	69	44	0	0	55	0.99
2550730--2550770	18	2.3	18	86	0	55	14	39	4	41	1.67
2552861--2552898	18	2.1	18	100	0	76	42	0	10	47	1.38
2559630--2559888	87	3.0	87	99	0	509	40	18	12	28	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!