genome.fa.s8397.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008397.1 Hibiscus syriacus cultivar Beakdansim tig00111166_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2560905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1496 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453432--453526	20	4.7	20	80	2	91	34	24	17	23	1.96
453709--453752	22	2.0	22	95	0	79	20	45	15	18	1.85
455364--455408	18	2.5	18	88	0	72	26	44	15	13	1.83
455888--455933	20	2.3	20	85	7	58	39	23	21	15	1.92
455927--456022	19	5.7	17	75	20	87	46	20	19	12	1.82
455943--456000	14	3.9	14	81	16	71	50	22	17	10	1.76
455927--456017	32	2.8	33	93	3	157	48	20	18	12	1.80
456048--456114	19	3.5	19	83	4	89	14	23	23	37	1.93
456060--456114	20	2.8	19	89	5	83	16	25	23	34	1.95
458121--458188	19	3.8	19	85	14	101	47	17	22	13	1.82
458207--458264	20	2.9	20	94	0	98	17	22	22	37	1.93
459326--459379	24	2.2	24	90	0	81	24	16	20	38	1.92
461840--461888	19	2.5	19	80	3	53	38	24	20	16	1.92
461860--461958	33	3.1	32	79	11	121	42	21	20	16	1.89
462136--462172	14	2.6	14	91	0	65	45	24	0	29	1.53
463537--463615	21	3.8	20	64	17	54	24	21	31	22	1.98
463522--463628	41	2.6	40	80	12	101	22	19	33	24	1.97
463552--463641	40	2.2	40	84	7	119	24	15	36	23	1.94
465657--465755	33	3.0	33	89	1	144	39	26	23	11	1.88
465632--465816	19	10.1	19	77	14	174	43	22	22	11	1.85
465727--465816	39	2.3	38	94	1	153	46	22	20	11	1.81
466385--466437	20	2.7	20	90	0	79	26	18	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466468--466560	20	4.5	21	78	4	100	17	24	18	39	1.91
466407--466541	41	3.3	41	83	4	139	19	21	21	37	1.94
466468--466560	41	2.3	41	100	0	186	17	24	18	39	1.91
469217--469347	50	2.6	50	85	0	172	18	33	27	20	1.96
469551--469591	18	2.3	18	91	4	66	29	4	2	63	1.28
469653--469985	111	3.0	111	98	0	639	35	8	11	44	1.71
471868--471896	3	9.7	3	100	0	58	34	31	34	0	1.58
472113--472197	35	2.5	33	78	14	91	25	8	10	55	1.62
477750--477812	18	3.3	18	75	12	63	44	3	4	47	1.40
477795--477827	14	2.4	14	94	0	57	27	6	9	57	1.53
481179--481329	61	2.6	55	72	13	133	47	4	29	19	1.69
481212--481326	61	1.9	61	81	3	142	46	3	27	22	1.68
481389--481515	53	2.4	52	79	8	123	38	3	31	25	1.74
482223--482468	26	9.2	26	73	20	147	45	6	6	41	1.56
482275--482541	33	7.8	33	74	17	203	45	7	6	40	1.58
482345--482468	59	2.1	58	83	5	151	47	6	7	38	1.57
482413--482467	9	6.6	9	76	16	55	49	7	9	34	1.62
482312--482484	92	1.9	90	88	7	258	46	7	6	39	1.58
482646--482686	11	3.6	11	87	12	57	43	4	7	43	1.53
482731--482774	2	22.0	2	90	9	72	47	0	2	50	1.13
485070--485103	16	2.2	15	94	5	59	47	23	5	23	1.73
487739--487827	30	2.9	31	79	11	96	24	13	38	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490747--490780	16	2.2	15	94	5	59	47	23	5	23	1.73
491119--491244	50	2.5	50	85	0	171	15	34	28	21	1.94
491446--491486	18	2.3	18	91	4	66	29	4	2	63	1.28
493384--493423	19	2.1	19	85	0	53	42	0	10	47	1.37
493526--493557	14	2.3	14	94	0	55	21	3	12	62	1.43
497655--497697	22	2.0	22	95	0	77	13	16	32	37	1.88
503886--504008	66	1.9	64	81	6	149	35	17	18	27	1.94
504598--504675	22	3.5	22	89	0	129	14	25	30	29	1.94
506021--506132	58	1.9	58	85	0	152	45	3	28	22	1.69
506507--506672	88	1.9	90	87	2	246	27	4	30	37	1.78
506670--506728	21	2.8	21	92	0	100	45	11	28	13	1.79
506680--506720	11	3.8	11	80	6	57	48	12	26	12	1.75
507047--507166	26	4.7	26	79	10	131	43	5	5	45	1.49
507073--507143	18	4.1	18	75	17	87	42	7	5	45	1.55
507072--507287	44	5.2	43	71	19	179	44	7	5	42	1.54
507115--507335	33	6.2	33	77	15	208	45	7	5	41	1.56
507227--507252	11	2.4	11	100	0	52	38	0	7	53	1.30
507237--507355	33	4.0	28	76	15	89	45	7	6	40	1.59
507238--507415	94	1.9	94	83	4	236	46	6	6	41	1.54
507148--507322	77	2.3	77	96	0	323	45	8	4	41	1.54
507302--507357	26	2.2	26	93	0	94	42	7	8	41	1.63
507302--507370	26	2.7	26	86	4	77	42	5	8	43	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507356--507514	45	3.5	45	84	4	187	49	3	4	43	1.38
507417--507506	37	2.4	37	80	15	121	47	3	3	45	1.35
507482--507628	10	14.1	11	70	15	73	47	4	4	44	1.41
507482--507540	11	5.4	11	78	8	57	44	1	6	47	1.39
507585--507632	2	24.0	2	91	8	80	47	0	2	50	1.12
512339--512375	15	2.5	15	91	4	58	27	0	0	72	0.84
512504--512563	27	2.3	26	85	8	77	51	1	0	46	1.10
512528--512578	20	2.5	21	78	6	61	49	1	0	49	1.12
520172--520259	30	2.9	30	91	0	140	32	6	26	34	1.83
521729--521771	21	2.0	21	90	0	68	32	27	23	16	1.96
522317--522637	103	3.1	103	94	1	563	27	12	23	37	1.90
522654--522716	23	2.7	23	85	4	83	20	25	26	26	1.99
529302--529622	103	3.1	103	97	0	606	25	13	24	37	1.91
529639--529701	23	2.7	23	85	4	83	22	26	25	25	2.00
530867--530921	20	2.8	20	78	15	60	29	9	36	25	1.87
534636--534722	32	2.8	31	82	3	111	47	8	3	41	1.50
536792--536850	31	1.9	31	86	6	84	37	16	6	38	1.76
537082--537115	2	17.0	2	100	0	68	50	0	0	50	1.00
550928--550993	29	2.3	29	81	5	80	22	27	25	24	2.00
550928--550993	14	4.5	15	81	7	73	22	27	25	24	2.00
558527--558567	19	2.2	19	86	0	55	48	2	4	43	1.37
558571--558859	156	1.9	156	82	4	368	44	8	8	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558501--558866	31	11.8	31	72	8	197	45	7	7	39	1.61
566418--566459	16	2.6	16	88	7	59	47	11	4	35	1.61
567512--567599	34	2.6	34	81	5	97	26	22	14	36	1.93
567740--567869	39	3.1	39	65	26	104	49	13	4	32	1.63
567704--567877	86	2.0	86	100	0	348	50	13	3	32	1.59
568596--568652	14	4.1	14	84	8	80	8	10	17	63	1.51
568841--568908	13	5.8	12	76	22	56	22	10	10	57	1.62
568868--568920	23	2.3	23	80	0	61	18	11	11	58	1.62
568841--568932	36	2.5	34	78	16	87	21	10	9	57	1.61
568869--568931	23	2.7	23	80	0	54	20	11	9	58	1.60
581436--581480	2	22.5	2	100	0	90	48	0	0	51	1.00
588480--588568	30	3.0	30	91	1	135	31	26	21	20	1.98
588564--588664	31	3.2	31	80	8	132	33	18	18	28	1.95
588961--589000	21	1.9	21	84	0	53	27	20	2	50	1.61
589490--589514	2	12.5	2	100	0	50	48	0	0	52	1.00
589546--589601	29	1.9	29	82	7	69	44	23	1	30	1.63
589990--590034	21	2.1	21	87	0	63	15	24	28	31	1.96
593323--593411	30	3.0	30	91	1	135	31	26	21	20	1.98
593407--593507	31	3.2	31	80	8	132	33	18	18	28	1.95
594334--594358	2	12.5	2	100	0	50	48	0	0	52	1.00
594833--594877	21	2.1	21	87	0	63	15	24	28	31	1.96
601311--601377	31	2.2	31	86	0	89	47	7	2	41	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602598--602649	18	2.8	19	88	5	79	38	0	0	61	0.96
603735--603781	23	2.0	23	87	0	67	34	10	14	40	1.81
605010--605098	21	4.2	21	77	0	88	33	14	14	37	1.87
605005--605098	42	2.2	42	79	9	102	32	14	13	38	1.86
608283--608365	21	4.0	21	73	9	64	32	12	8	46	1.71
609747--609902	82	1.9	84	87	2	235	45	3	13	37	1.62
614680--614713	16	2.1	17	88	5	52	41	2	23	32	1.69
628040--628162	63	1.9	64	81	4	151	36	20	16	26	1.93
628524--628612	30	3.0	30	89	0	133	40	4	24	30	1.75
628835--628902	23	3.0	23	78	8	68	22	25	25	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13