genome.fa.s8558.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008558.1 Hibiscus syriacus cultivar Beakdansim tig00111463_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2950132

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2841663--2841703	21	2.0	21	85	0	55	34	19	17	29	1.94
2842457--2842506	19	2.6	19	100	0	100	30	22	22	26	1.99
2845911--2845973	27	2.3	27	80	5	63	57	14	1	26	1.47
2846469--2846498	2	15.5	2	93	6	53	50	0	0	50	1.00
2848811--2848840	15	2.0	15	93	0	51	43	20	3	33	1.68
2857792--2857831	21	2.0	20	85	5	53	45	2	0	52	1.14
2867428--2867491	2	32.5	2	90	9	105	48	0	1	50	1.10
2867421--2867584	11	15.6	10	76	13	86	37	1	2	58	1.19
2867487--2867592	54	1.9	57	83	16	143	30	1	2	65	1.18
2867540--2867584	16	2.9	15	87	12	65	37	0	0	62	0.96
2867540--2867582	21	2.0	21	91	8	70	37	0	0	62	0.95
2867543--2867629	10	9.0	9	70	21	52	28	2	1	67	1.10
2867779--2867819	21	2.0	22	86	13	61	24	2	0	73	0.96
2867779--2867824	21	2.3	19	82	17	58	23	2	0	73	0.94
2867980--2868014	16	2.3	15	86	13	54	20	2	14	62	1.43
2869534--2869573	21	2.0	21	95	5	73	30	22	10	37	1.87
2870006--2870047	17	2.6	16	85	14	59	59	0	28	11	1.33
2874910--2874964	21	2.7	20	85	2	65	27	23	12	36	1.91
2875016--2875056	21	2.0	21	85	0	55	24	31	17	26	1.97
2876104--2876232	60	2.1	61	91	4	208	27	15	15	41	1.87
2879234--2879268	17	2.1	17	100	0	70	22	31	11	34	1.90
2882569--2882602	17	2.1	17	88	5	52	61	2	0	35	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2882728--2882773	18	2.6	17	86	10	65	60	2	4	32	1.28
2883998--2884071	37	2.0	37	89	0	112	18	31	13	36	1.90
2886440--2886537	31	3.1	31	77	2	97	25	31	24	18	1.97
2886444--2886536	32	3.0	32	79	3	91	26	31	25	16	1.96
2890790--2890827	20	1.9	20	88	0	58	42	7	7	42	1.63
2893160--2893198	3	13.0	3	88	0	60	71	0	28	0	0.86
2893160--2893198	15	2.6	15	100	0	78	71	0	28	0	0.86
2896483--2896605	66	1.9	63	83	9	158	35	19	19	25	1.95
2897200--2897251	22	2.4	22	90	0	86	17	19	30	32	1.95
2904134--2904190	22	2.6	22	94	0	96	17	28	28	26	1.98
2925240--2925315	36	2.1	36	97	0	143	43	14	10	31	1.79
2929794--2929822	15	1.9	15	100	0	58	13	44	27	13	1.82
2930246--2930321	36	2.1	36	97	0	143	43	14	10	31	1.79
2932371--2932413	14	3.1	14	93	0	68	37	2	23	37	1.68
2932456--2932512	21	2.8	21	97	2	107	33	0	7	59	1.24
2933200--2933392	20	9.6	20	84	5	246	34	27	19	18	1.95
2933770--2933838	32	2.2	32	94	0	120	11	23	18	46	1.82
2933770--2933819	18	3.0	18	69	22	54	12	24	20	44	1.85
2933921--2933994	21	3.5	20	80	8	94	47	17	20	14	1.83
2934066--2934130	21	3.1	21	82	4	96	10	26	15	47	1.78
2934022--2934128	19	5.7	20	73	17	97	11	22	18	47	1.80
2935816--2936130	93	3.4	93	97	0	596	22	13	18	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2936245--2936301	14	3.7	14	72	20	51	43	24	22	8	1.81
2936228--2936350	33	3.7	33	89	4	167	46	27	17	8	1.77
2936259--2936320	19	3.6	18	72	20	60	45	27	19	8	1.78
2936276--2936339	14	4.3	14	76	19	67	50	28	15	6	1.68
2936292--2936350	19	3.4	19	77	22	74	49	30	13	6	1.68
2936346--2936504	19	8.6	19	79	7	157	11	19	22	45	1.83
2936354--2936488	52	2.5	54	85	6	166	11	20	21	47	1.80
2938415--2938450	14	2.6	14	95	0	63	33	0	22	44	1.53
2938557--2938654	19	5.4	19	83	14	127	44	17	23	14	1.85
2938557--2938672	53	2.2	53	95	4	209	43	18	25	13	1.86
2938663--2938923	19	14.7	19	78	18	303	14	22	17	45	1.85
2938669--2938937	105	2.6	104	91	4	418	14	22	17	45	1.84
2938669--2938937	52	5.1	52	88	6	400	14	22	17	45	1.84
2941203--2941227	12	2.1	12	100	0	50	0	28	0	72	0.86
2942137--2942365	20	11.4	20	85	1	235	19	17	25	37	1.94
2942333--2942429	21	4.7	20	75	11	79	21	19	21	37	1.95
2942333--2942430	42	2.4	42	77	13	105	21	19	22	36	1.95
2943789--2943828	21	2.0	21	85	5	55	37	7	5	50	1.53
2944133--2944255	50	2.5	50	81	6	144	14	34	28	21	1.93
2944378--2944417	10	4.1	10	87	6	55	32	27	0	40	1.57
2944379--2944416	19	2.0	19	89	0	58	34	23	0	42	1.55
2944546--2944757	110	1.9	110	92	1	354	36	7	11	44	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!