genome.fa.s8558.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008558.1 Hibiscus syriacus cultivar Beakdansim tig00111463_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2950132

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  3  of  14  ( 1626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498225--498949	22	31.6	22	67	20	241	50	2	7	39	1.44
498358--498560	73	2.8	73	77	14	222	54	1	6	37	1.38
498474--498580	29	3.6	29	78	15	87	54	2	9	33	1.47
498606--498762	85	1.9	81	85	10	214	50	0	7	41	1.34
498808--498870	17	3.9	16	71	22	60	53	1	3	41	1.26
498305--498913	15	38.1	16	66	24	107	51	2	7	38	1.43
498941--499601	13	48.1	14	64	25	93	37	6	3	52	1.45
499018--499189	80	2.1	80	87	6	249	38	5	2	52	1.38
499123--499195	20	3.5	21	78	12	71	39	9	1	49	1.44
497903--499160	2	639.0	2	62	21	175	47	3	5	43	1.44
498946--499282	114	3.1	107	71	17	275	37	7	2	53	1.40
499509--499543	2	18.0	2	94	5	63	48	0	0	51	1.00
499704--499743	2	20.0	2	100	0	80	50	0	0	50	1.00
500168--500234	21	3.2	22	79	12	79	50	4	10	34	1.57
500226--500437	22	9.5	22	76	14	195	50	1	7	39	1.41
500226--500413	71	2.8	67	81	10	192	51	2	7	38	1.43
500228--500443	14	15.1	15	67	24	103	51	1	7	39	1.41
500190--500437	43	5.6	45	75	16	193	50	2	8	39	1.45
500204--500443	93	2.6	88	79	13	231	51	2	7	38	1.42
500228--500402	8	23.1	8	70	21	119	50	1	8	38	1.43
500360--500443	30	2.9	29	83	7	82	52	1	5	40	1.34
500425--500633	28	7.7	28	70	21	124	39	8	2	49	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500397--500571	28	6.3	28	75	16	84	41	6	3	48	1.47
500427--500500	33	2.3	31	80	15	80	45	5	1	47	1.34
500490--500550	26	2.4	25	91	5	97	37	8	3	50	1.48
500616--500708	2	46.0	2	71	21	61	48	1	5	45	1.32
500622--500660	19	2.1	19	90	9	62	51	0	5	43	1.24
501353--501425	21	3.8	20	73	20	68	42	4	1	52	1.29
501357--501419	21	3.1	21	75	13	78	41	3	1	53	1.26
503886--504137	46	5.8	45	81	13	285	40	6	20	32	1.78
503890--504111	91	2.6	87	84	11	262	40	6	20	32	1.78
504029--504101	37	2.0	37	94	0	128	38	4	21	35	1.73
511616--511887	45	6.0	45	86	3	341	40	5	20	33	1.75
511616--511887	91	3.0	90	82	4	334	40	5	20	33	1.75
512275--512412	20	7.2	20	70	18	96	47	4	3	44	1.40
512323--512403	13	6.2	13	75	13	76	50	3	1	44	1.27
512296--512368	26	2.7	26	82	6	83	52	5	2	39	1.39
512390--512600	84	2.6	77	73	18	173	51	1	7	39	1.39
512459--512593	22	6.3	23	73	14	85	54	0	7	37	1.34
512415--512593	99	1.8	98	86	12	260	53	1	7	37	1.38
512475--512593	22	5.6	21	76	16	113	55	0	6	36	1.32
524654--524722	6	12.5	6	77	14	69	82	1	13	2	0.85
524653--524722	11	6.5	11	85	9	99	81	1	14	2	0.88
528936--528964	4	7.2	4	100	0	58	51	24	0	24	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528984--529486	22	23.3	22	71	17	237	52	2	7	38	1.41
529097--529236	17	8.2	18	72	15	59	50	2	5	42	1.38
529115--529230	2	59.0	2	75	16	91	50	1	3	43	1.29
528989--529476	86	5.6	87	74	14	277	52	2	7	38	1.42
528983--529476	44	10.9	44	70	19	274	51	2	7	38	1.42
529020--529470	30	16.0	28	68	21	177	51	2	7	39	1.41
529262--529486	65	3.4	63	73	22	189	51	0	8	40	1.38
529488--529673	7	27.4	7	69	19	51	37	8	2	51	1.47
529523--529577	27	2.1	25	86	6	74	40	7	0	52	1.29
529529--529841	27	12.0	26	67	22	92	38	7	2	51	1.46
529536--529616	2	40.0	2	71	20	53	43	6	0	50	1.27
529544--529669	28	4.5	28	70	23	79	38	7	2	50	1.44
529663--529707	24	1.9	23	86	4	63	40	6	0	53	1.27
529758--529803	8	6.1	8	80	14	62	34	10	0	54	1.36
529745--529836	35	2.6	36	77	17	93	36	8	1	53	1.39
529830--529868	14	2.8	14	92	7	62	53	2	5	38	1.37
529828--529873	16	2.9	16	81	15	60	54	2	4	39	1.32
530035--530076	2	21.0	2	100	0	84	50	0	0	50	1.00
530503--530528	7	3.7	7	100	0	52	57	11	0	30	1.34
530530--530563	2	17.0	2	100	0	68	50	0	0	50	1.00
530601--530650	22	2.3	22	86	10	68	58	0	4	38	1.17
530597--530652	13	4.5	13	75	20	66	58	0	3	37	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530752--530787	19	1.9	19	88	5	56	41	8	0	50	1.33
547931--548719	418	1.9	416	90	2	1276	27	23	11	38	1.89
553547--553589	19	2.3	19	83	0	59	48	6	20	23	1.73
554965--555007	2	21.5	2	100	0	86	51	0	0	48	1.00
555010--555086	30	2.5	33	72	8	81	32	25	3	37	1.75
556801--556834	17	2.0	17	88	0	50	58	0	5	35	1.22
563236--563268	17	1.9	17	93	0	57	30	3	21	45	1.67
564237--564272	18	2.0	18	94	0	63	61	2	0	36	1.11
566868--566915	11	4.4	11	89	0	78	60	8	12	18	1.57
568939--568990	24	2.2	24	82	6	61	28	23	9	38	1.86
569726--570395	54	12.4	54	85	7	871	52	12	0	35	1.40
569790--569832	22	2.0	22	100	0	86	51	13	0	34	1.42
569792--569840	22	2.2	22	88	3	71	55	14	0	30	1.40
569795--570353	80	6.9	79	77	13	548	52	13	0	33	1.41
569846--569920	22	3.2	22	75	14	69	54	16	0	29	1.42
569926--570000	22	3.2	23	71	17	73	54	16	0	29	1.42
570004--570046	22	2.0	22	100	0	86	51	13	0	34	1.42
570006--570054	22	2.2	22	88	3	71	55	14	0	30	1.40
570058--570100	22	2.0	22	100	0	86	51	13	0	34	1.42
570060--570108	22	2.2	22	88	3	71	55	14	0	30	1.40
570112--570154	22	2.0	22	100	0	86	51	13	0	34	1.42
570114--570162	22	2.2	22	88	3	71	55	14	0	30	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570168--570216	22	2.2	22	85	3	62	55	12	0	32	1.37
570278--570320	22	2.0	22	100	0	86	51	13	0	34	1.42
570280--570328	22	2.2	22	88	3	71	55	14	0	30	1.40
570352--570470	15	8.0	15	89	5	179	50	0	0	49	1.00
570297--570470	30	5.5	33	83	11	127	51	4	0	44	1.20
570352--570470	30	4.0	30	89	6	197	50	0	0	49	1.00
570352--570471	45	2.7	45	94	1	215	50	0	0	49	1.00
569763--570395	166	3.9	165	86	8	750	52	12	0	34	1.40
571686--571745	13	4.5	13	80	13	61	25	15	5	55	1.60
573530--573634	45	2.3	45	96	0	192	23	16	24	35	1.95
573619--573759	55	2.6	55	91	0	219	31	12	26	29	1.93
574078--574120	22	2.0	22	90	4	70	48	9	4	37	1.56
575858--575891	12	2.8	12	90	4	50	44	5	11	38	1.65
580238--580453	116	1.9	116	87	0	315	29	14	7	47	1.73
581826--581970	55	2.6	55	84	2	184	31	13	26	29	1.93
587109--587147	16	2.4	17	86	8	62	64	2	17	15	1.41
587658--587692	2	17.5	2	100	0	70	48	0	0	51	1.00
601358--601405	19	2.6	18	80	9	53	27	25	18	29	1.98
614232--614452	45	4.9	45	88	3	304	40	7	19	32	1.79
614232--614451	91	2.5	90	86	4	311	40	7	19	32	1.79
619741--619809	9	7.6	9	72	15	52	76	1	4	17	1.02
619746--619799	18	3.1	17	87	12	74	79	1	3	14	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
619740--619809	27	2.6	26	80	13	70	75	1	4	18	1.04
619789--619914	34	3.7	34	70	23	95	68	3	2	25	1.19
619856--619917	31	1.9	33	87	12	94	70	3	3	22	1.16
621555--622843	85	15.3	85	78	5	434	25	18	20	35	1.95
621572--622856	254	5.1	254	79	6	1333	25	18	20	35	1.95
622290--622856	85	6.7	85	79	4	595	25	18	20	35	1.95
623844--624034	99	1.9	99	86	0	274	33	16	16	34	1.91
626525--626568	15	2.9	15	83	12	63	79	0	2	18	0.83
626516--626570	19	2.8	19	80	17	60	80	0	1	18	0.81
626516--626568	10	5.4	10	77	18	58	79	0	1	18	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14