genome.fa.s8558.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008558.1 Hibiscus syriacus cultivar Beakdansim tig00111463_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2950132

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282509--282550	14	3.0	14	82	10	50	80	2	14	2	0.90
282509--282563	23	2.4	23	81	0	74	76	1	18	3	1.02
284541--284567	4	6.8	4	100	0	54	25	22	0	51	1.48
286316--286358	15	3.0	14	83	13	52	81	2	13	2	0.89
290246--290273	9	3.1	9	100	0	56	10	10	0	78	0.96
294438--294566	59	2.2	59	100	0	258	31	14	22	31	1.94
295445--295494	14	3.6	14	91	2	84	26	40	0	34	1.56
295639--295669	15	2.1	15	93	0	53	22	29	0	48	1.51
301589--301627	11	3.5	11	82	3	51	0	10	7	82	0.86
301589--301627	12	3.3	12	85	7	62	0	10	7	82	0.86
301570--301635	31	2.2	30	83	8	80	0	7	10	81	0.86
301581--301635	23	2.5	22	88	5	83	0	7	9	83	0.81
309834--309892	24	2.5	24	97	0	109	30	37	11	20	1.89
310184--310232	19	2.6	19	90	0	71	36	10	8	44	1.68
310573--310619	14	3.4	14	85	2	60	25	44	0	29	1.54
311009--311049	6	6.7	6	83	5	55	80	4	14	0	0.87
313184--313259	30	2.5	30	100	0	152	30	15	31	22	1.95
313373--313431	24	2.5	24	91	0	91	32	35	10	22	1.87
313722--313771	19	2.6	19	93	0	82	34	14	8	44	1.74
314112--314158	14	3.4	14	85	2	60	23	42	0	34	1.54
314544--314584	6	6.7	6	83	5	55	82	4	12	0	0.81
314544--314584	13	3.2	13	82	6	57	82	4	12	0	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317045--317089	20	2.3	20	84	3	56	42	11	6	40	1.67
317854--317915	24	2.6	24	100	0	124	75	8	16	0	1.02
317854--317917	6	10.8	6	76	14	53	75	7	17	0	1.04
320398--320441	20	2.3	19	88	4	61	81	9	9	0	0.87
320405--320448	10	4.4	10	80	11	54	75	13	11	0	1.06
326564--326599	13	2.6	14	86	4	56	25	41	0	33	1.55
329918--329953	13	2.6	14	86	4	56	25	41	0	33	1.55
332608--332719	35	3.2	35	85	1	143	30	3	36	29	1.74
335597--335637	6	6.7	6	83	5	55	80	2	14	2	0.92
335663--335717	23	2.4	23	81	0	74	76	0	20	3	0.94
355739--355790	21	2.6	21	90	6	81	36	11	5	46	1.64
357962--358005	22	2.0	22	100	0	88	27	13	27	31	1.94
358444--358486	20	2.2	20	83	4	52	44	4	13	37	1.65
361456--361568	36	3.2	36	92	1	174	32	36	3	27	1.74
361456--361554	13	8.3	11	71	23	67	31	36	3	29	1.73
361468--361607	36	4.1	33	83	9	97	30	36	2	30	1.72
363967--363999	15	2.1	16	88	5	50	42	0	33	24	1.55
366375--366434	30	2.0	31	86	3	86	28	8	10	53	1.63
368860--368911	21	2.6	21	90	6	81	34	13	5	46	1.67
369512--369562	19	2.6	20	84	3	68	41	5	11	41	1.66
369459--370039	302	1.9	301	99	0	1144	35	13	13	36	1.85
371575--371603	15	2.0	15	93	6	51	75	3	20	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376142--376176	16	2.1	18	89	10	56	65	0	8	25	1.21
376181--376235	16	3.4	16	79	13	60	65	1	7	25	1.28
376754--376854	34	2.9	36	91	5	179	27	13	13	44	1.82
377398--378018	209	3.0	208	87	3	849	23	17	25	33	1.96
377398--378012	105	5.9	105	87	4	816	23	17	25	33	1.96
377399--378057	314	2.1	311	85	4	896	22	17	25	33	1.96
378444--378510	29	2.3	26	76	20	62	29	17	8	43	1.80
378648--378982	65	4.9	67	75	10	254	39	11	20	29	1.87
378794--379002	36	6.0	35	75	14	191	40	14	19	25	1.89
378805--378916	37	3.1	36	79	13	122	41	15	19	23	1.89
378742--379004	138	1.9	138	88	1	402	40	13	19	26	1.89
378936--379036	36	2.8	36	82	7	109	40	17	20	20	1.91
378932--379052	35	3.4	35	73	14	113	38	15	19	25	1.92
379482--379517	18	2.0	18	88	0	54	41	30	8	19	1.81
380578--380630	16	3.4	15	82	15	63	1	11	7	79	1.01
380592--380638	16	2.9	16	80	0	58	0	10	8	80	0.89
385018--385052	16	2.1	18	89	10	56	65	0	8	25	1.21
385614--385715	34	2.9	35	91	5	170	27	14	13	44	1.83
386547--386585	18	2.2	18	85	0	51	23	0	10	66	1.22
398693--398931	54	4.4	54	86	3	347	30	19	17	32	1.95
398694--398931	107	2.2	108	88	2	345	30	19	18	32	1.95
398899--398961	32	2.0	32	90	0	99	38	17	14	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398965--399076	53	2.1	52	83	6	136	31	19	17	31	1.95
401480--401519	18	2.2	18	86	0	53	32	35	10	22	1.87
401761--401798	18	2.1	19	95	5	69	92	0	2	5	0.47
409873--409901	15	2.0	15	93	6	51	75	3	20	0	0.94
417067--417109	15	2.7	17	79	17	56	34	25	16	23	1.95
417166--417211	20	2.3	20	85	7	58	23	13	21	41	1.88
417198--417253	20	2.8	20	91	0	94	17	21	25	35	1.95
423619--423662	21	2.0	22	86	4	63	65	25	0	9	1.21
434127--434173	12	3.8	12	83	8	51	34	6	0	59	1.23
434143--434204	10	6.4	10	85	7	83	43	0	1	54	1.09
434143--434204	4	16.0	4	89	3	83	43	0	1	54	1.09
434307--434365	31	1.9	31	86	3	84	23	1	0	74	0.91
434466--434510	18	2.7	17	83	12	58	13	13	0	73	1.10
434539--434588	24	2.1	23	85	10	66	16	2	4	78	1.00
436926--436997	17	4.2	17	80	5	74	38	13	8	38	1.75
443012--443121	32	3.4	32	78	5	96	36	11	18	33	1.87
442987--443191	96	2.1	96	79	7	211	37	13	19	30	1.90
444106--444148	9	5.0	9	80	11	54	44	11	4	39	1.62
444103--444148	17	2.8	17	90	3	76	45	13	4	36	1.63
444697--444786	45	2.0	45	100	0	180	33	22	8	35	1.85
453698--453722	13	1.9	13	100	0	50	24	0	0	76	0.80
453701--453796	41	2.3	41	84	8	115	35	1	2	61	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454296--454329	13	2.4	15	90	9	54	41	2	17	38	1.65
455601--455840	118	2.0	118	100	0	480	31	7	17	42	1.77
458689--458733	20	2.3	19	84	3	54	40	2	20	37	1.65
463983--464046	27	2.4	26	80	14	69	79	3	12	4	1.00
463998--464053	27	2.1	27	87	9	80	76	3	14	5	1.09
463984--464068	9	10.4	8	74	18	61	80	3	11	4	1.00
463984--464068	23	3.5	24	77	17	86	80	3	11	4	1.00
464903--464951	24	2.0	24	92	0	80	26	22	26	24	2.00
466433--466471	21	1.9	20	84	5	51	48	5	15	30	1.66
467578--467638	23	2.7	23	79	5	79	24	24	22	27	2.00
474324--474373	21	2.4	21	90	6	75	22	10	28	40	1.86
474367--474419	23	2.3	23	90	0	79	22	18	26	32	1.97
474343--474447	23	4.8	21	71	21	56	21	18	25	34	1.96
480799--480847	24	2.0	24	88	0	71	28	20	22	28	1.98
482065--482190	65	2.0	64	84	7	166	29	15	24	30	1.96
484655--484737	23	3.7	23	76	16	93	28	21	24	25	1.99
484640--484756	44	2.7	42	79	11	128	29	19	23	28	1.98
492011--492275	135	2.0	135	84	3	345	30	22	13	33	1.93
492220--492324	41	2.6	41	89	3	149	32	23	17	26	1.96
492106--492456	176	2.0	176	86	2	490	32	22	14	31	1.94
492261--492607	134	2.6	134	81	8	398	31	21	15	31	1.94
492785--492834	3	16.7	3	100	0	100	0	0	32	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492833--492877	3	14.3	3	81	9	54	33	0	4	62	1.15
492835--492877	13	3.4	13	83	3	52	34	0	4	60	1.17
494371--494440	29	2.5	26	82	17	79	22	10	5	61	1.49
494889--495204	131	2.4	131	82	2	368	34	12	15	37	1.85
496536--496578	15	2.9	15	100	0	86	25	0	39	34	1.56
497597--497667	36	2.0	36	94	0	124	23	16	11	47	1.79
497917--498080	9	17.7	9	67	24	58	46	4	3	45	1.40
497890--497981	41	2.2	41	94	0	157	46	5	1	46	1.32
497902--498478	13	44.5	13	65	19	101	47	3	3	45	1.39
497935--498213	11	26.4	11	67	16	81	45	3	2	47	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14