genome.fa.s8558.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008558.1 Hibiscus syriacus cultivar Beakdansim tig00111463_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2950132

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  9  of  14  ( 1626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1910385--1910555	76	2.2	77	84	5	231	46	2	6	44	1.41
1910509--1910585	31	2.4	33	80	12	97	40	0	9	50	1.34
1910565--1910633	25	3.0	22	76	14	75	33	1	0	65	1.02
1910567--1910654	37	2.5	36	79	17	103	28	1	0	70	0.95
1910638--1910664	12	2.2	12	100	0	54	14	0	0	85	0.61
1911134--1911237	37	2.8	37	89	0	154	40	13	15	30	1.86
1913246--1913286	20	2.0	20	86	9	57	12	21	0	65	1.25
1916673--1916732	8	7.6	8	72	10	52	80	5	13	1	0.96
1916670--1916732	7	8.4	7	76	23	58	80	4	12	1	0.93
1916669--1916731	23	2.7	23	77	22	69	79	6	12	1	0.99
1916656--1916744	24	3.5	25	77	11	74	74	6	17	1	1.10
1917298--1917372	22	3.4	22	86	0	114	37	28	13	21	1.91
1918194--1919673	106	14.0	106	88	2	1998	34	24	17	23	1.96
1920404--1920508	37	2.8	37	88	0	156	40	14	14	31	1.86
1921048--1921077	2	15.0	2	92	0	51	46	0	0	53	1.00
1921360--1921400	2	20.5	2	100	0	82	48	0	0	51	1.00
1922525--1922553	2	14.5	2	100	0	58	48	0	0	51	1.00
1928709--1929313	86	7.0	86	85	2	759	38	18	17	26	1.92
1928710--1929313	170	3.5	171	86	3	775	38	18	17	26	1.92
1928709--1929304	256	2.3	258	86	4	790	38	18	17	26	1.92
1929943--1930024	37	2.2	37	86	4	112	41	2	8	47	1.47
1930008--1930043	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1930028--1930208	40	4.6	39	85	10	237	48	2	7	42	1.43
1930248--1930314	10	6.1	11	71	22	52	31	0	1	67	1.00
1930287--1930330	14	3.1	14	86	3	52	27	0	0	72	0.85
1930242--1930329	45	1.9	46	82	11	110	29	0	2	68	1.02
1931515--1931547	2	16.5	2	100	0	66	48	0	0	51	1.00
1933052--1933107	3	19.0	3	88	3	69	39	1	0	58	1.08
1933050--1933104	26	2.1	26	89	0	83	40	1	0	58	1.09
1933059--1933122	32	1.9	32	84	6	83	43	6	0	50	1.27
1941600--1941653	20	2.7	20	79	0	54	27	24	18	29	1.98
1941496--1941782	119	2.4	119	91	2	452	31	16	19	33	1.94
1941917--1941995	3	26.7	3	92	2	133	35	1	0	63	1.03
1943284--1943326	19	2.4	18	85	11	54	39	2	6	51	1.42
1944982--1945042	28	2.2	28	85	5	79	4	18	0	77	0.95
1944997--1945035	11	3.6	11	83	16	55	7	15	0	76	0.99
1948914--1949194	39	7.7	39	72	19	173	46	2	6	44	1.42
1948998--1949070	31	2.3	31	88	2	101	49	2	5	42	1.40
1949051--1949117	26	2.5	27	82	7	91	49	2	4	43	1.38
1949062--1949114	26	2.0	26	96	0	97	49	0	5	45	1.26
1949080--1949217	39	3.6	38	80	8	147	47	0	4	47	1.27
1948940--1949156	65	3.2	65	83	10	265	47	3	6	42	1.46
1949117--1949170	28	1.9	28	84	0	72	50	0	3	46	1.19
1948982--1949206	65	3.4	67	78	12	223	48	1	4	45	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1949156--1949206	27	1.9	27	88	4	77	45	0	1	52	1.12
1949233--1949281	20	2.4	21	86	3	64	16	4	2	77	1.01
1955619--1955662	19	2.3	19	80	7	54	34	13	22	29	1.93
1956075--1956335	47	5.6	47	89	1	389	47	11	20	20	1.81
1956075--1956759	141	4.7	141	79	12	563	46	11	20	21	1.82
1956250--1956550	74	4.2	74	73	13	311	46	11	20	20	1.82
1956203--1956594	121	3.1	121	83	8	417	46	12	20	20	1.82
1956156--1956505	168	2.1	168	92	2	578	45	12	20	21	1.83
1956324--1956765	47	9.4	47	91	0	695	45	11	20	21	1.83
1956418--1956503	27	3.4	27	72	21	105	46	12	22	18	1.83
1963428--1963555	20	5.7	20	69	22	85	44	10	25	19	1.83
1963414--1963628	47	4.6	47	90	2	351	44	12	21	21	1.84
1963450--1963535	27	3.5	26	71	21	85	47	10	22	19	1.79
1963589--1963650	27	2.3	27	91	5	99	46	12	17	22	1.82
1963414--1963676	141	1.9	140	81	7	318	44	12	20	22	1.84
1963542--1963681	74	1.9	74	90	0	226	43	12	20	23	1.86
1968744--1968929	39	4.7	40	81	9	220	47	2	6	43	1.43
1968838--1969086	65	3.7	65	73	19	199	44	1	6	46	1.37
1968827--1969046	37	6.1	36	74	16	188	47	1	5	45	1.35
1968817--1969086	102	2.7	100	87	5	391	45	1	6	46	1.38
1968903--1969060	26	6.2	26	76	14	132	44	0	7	46	1.36
1968893--1969086	65	3.0	63	84	7	223	43	1	7	47	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1969094--1969137	7	6.3	7	84	7	54	38	2	2	56	1.24
1969094--1969137	15	3.1	14	84	9	54	38	2	2	56	1.24
1969850--1969947	4	24.2	4	73	15	69	74	0	6	19	1.02
1969874--1969941	10	6.6	10	77	15	68	76	0	4	19	0.95
1969874--1969941	29	2.4	29	87	7	95	76	0	4	19	0.95
1969951--1969978	2	14.0	2	100	0	56	50	0	0	50	1.00
1970248--1970295	19	2.5	19	80	10	53	64	0	4	31	1.12
1970817--1970920	37	2.8	37	85	0	136	30	15	11	42	1.82
1971651--1973223	106	14.9	105	89	2	2235	23	18	24	34	1.96
1971651--1973223	318	5.0	318	92	1	2489	23	18	24	34	1.96
1973512--1973553	18	2.3	19	87	4	59	47	30	2	19	1.62
1973969--1974023	22	2.5	22	96	0	101	21	14	27	36	1.93
1974631--1974685	16	3.4	16	72	22	51	3	12	10	72	1.24
1974635--1974703	33	2.1	34	91	2	113	4	11	13	71	1.29
1974635--1974699	15	4.1	15	73	21	53	3	12	12	72	1.24
1977631--1977698	16	4.1	16	73	17	50	76	0	7	16	1.00
1977676--1977704	4	7.2	4	100	0	58	75	0	0	24	0.80
1978021--1978058	19	2.0	19	85	10	51	63	0	2	34	1.09
1978588--1978692	37	2.8	37	88	0	156	29	15	15	40	1.88
1984928--1984959	3	10.7	3	100	0	64	65	0	0	34	0.93
1989377--1989434	7	8.3	7	75	7	55	50	32	0	17	1.46
1989382--1989434	21	2.5	22	87	6	74	49	32	0	18	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1989821--1989914	48	1.9	48	89	2	143	50	5	8	36	1.56
1990338--1990382	20	2.3	20	84	3	56	44	6	8	40	1.62
1990463--1990527	7	9.3	7	76	6	60	47	33	1	16	1.56
1990469--1990522	28	1.9	28	84	0	72	48	31	1	18	1.59
1990979--1991033	16	3.5	16	85	5	67	40	10	29	20	1.86
1991476--1991505	2	15.0	2	100	0	60	50	0	0	50	1.00
2004341--2004390	24	2.1	24	88	0	73	26	22	28	24	1.99
2004416--2004467	23	2.3	23	82	0	68	32	23	26	17	1.96
2004631--2004676	15	3.1	15	83	0	65	45	17	6	30	1.73
2004661--2004792	57	2.3	57	80	2	149	37	15	3	43	1.63
2008967--2008995	15	1.9	15	100	0	58	27	31	6	34	1.83
2009562--2009594	12	2.6	13	90	4	50	45	6	12	36	1.66
2009619--2009660	19	2.2	20	82	4	50	69	14	0	16	1.20
2010050--2010108	23	2.7	23	74	10	61	35	13	18	32	1.90
2016537--2016611	32	2.3	32	81	4	80	36	14	18	30	1.91
2019097--2019124	12	2.3	12	100	0	56	57	0	0	42	0.99
2019091--2019129	12	2.9	14	81	18	55	56	0	0	43	0.99
2020202--2020245	15	3.0	15	87	12	65	56	0	0	43	0.99
2020196--2020256	26	2.4	26	81	13	74	57	3	0	39	1.15
2020201--2020245	2	25.0	2	79	20	55	55	0	0	44	0.99
2020201--2020368	33	5.1	33	75	11	139	47	5	4	42	1.47
2021099--2021145	10	4.6	10	77	15	51	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2021101--2021147	7	6.6	7	86	13	69	55	0	0	44	0.99
2021101--2021147	15	3.3	14	88	11	69	55	0	0	44	0.99
2021153--2021303	11	13.5	11	70	14	87	41	5	7	45	1.56
2019468--2021268	900	2.0	900	98	0	3480	42	9	13	35	1.76
2021240--2021668	20	21.6	19	69	15	108	47	5	4	42	1.47
2021222--2021325	54	1.9	54	90	0	163	42	4	6	46	1.51
2021328--2021449	11	11.7	11	66	20	75	51	9	2	36	1.48
2021220--2021344	54	2.4	53	81	5	155	44	5	6	44	1.53
2021240--2021362	54	2.4	54	81	8	139	44	5	5	43	1.51
2021603--2021667	2	33.0	2	87	9	98	50	1	0	47	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14