genome.fa.s8558.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008558.1 Hibiscus syriacus cultivar Beakdansim tig00111463_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2950132

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  8  of  14  ( 1626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1669519--1669568	18	2.8	18	84	0	55	26	4	22	48	1.68
1672633--1672877	134	1.8	134	89	0	382	28	20	17	32	1.96
1673278--1673373	20	5.2	19	73	19	96	41	0	11	46	1.40
1673313--1673412	31	3.2	31	83	9	125	46	0	9	45	1.35
1673319--1673411	33	2.9	32	85	6	136	45	0	9	45	1.36
1673350--1673508	26	6.2	25	67	25	84	45	3	9	42	1.52
1673260--1673412	33	4.5	33	76	14	134	47	0	9	43	1.35
1673407--1673500	21	4.2	21	73	25	77	42	5	9	42	1.60
1673377--1673508	47	2.8	46	78	13	142	45	3	9	41	1.54
1679248--1679280	13	2.5	13	100	0	66	30	9	45	15	1.77
1682266--1682323	19	3.0	19	71	11	55	20	18	34	25	1.96
1682248--1682321	21	3.7	20	75	8	71	20	20	35	24	1.96
1682358--1682395	20	2.0	20	89	5	60	23	18	31	26	1.97
1682561--1682600	19	2.0	20	85	4	55	52	7	0	40	1.30
1689695--1689733	21	2.0	20	90	10	62	15	25	35	23	1.94
1689812--1689849	20	2.0	20	89	5	60	23	18	31	26	1.97
1690015--1690054	19	2.0	20	85	4	55	52	7	0	40	1.30
1701254--1701302	25	2.0	25	95	0	89	46	10	8	34	1.67
1705164--1705221	21	2.8	21	86	0	80	20	32	29	17	1.95
1707801--1707859	30	2.0	30	96	0	109	55	22	3	18	1.57
1710618--1710913	55	5.6	55	85	6	310	28	25	17	29	1.97
1710618--1710919	110	2.9	105	83	6	346	28	25	16	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1710930--1711042	37	3.1	37	91	6	194	21	22	19	37	1.95
1712312--1712483	7	23.9	7	69	21	63	6	15	0	77	0.97
1712313--1712483	16	10.7	16	75	17	92	7	15	0	77	0.98
1712316--1712453	26	5.1	26	71	18	68	7	15	0	76	0.99
1712312--1712480	47	3.6	45	69	26	54	7	15	0	77	0.97
1720410--1720655	123	2.0	123	98	0	474	18	28	10	41	1.84
1722215--1722366	46	3.3	46	91	4	234	39	20	9	30	1.85
1732368--1732402	2	17.5	2	87	0	52	2	48	2	45	1.32
1733330--1733367	17	2.1	19	85	9	53	39	0	55	5	1.23
1736697--1736753	30	1.9	30	92	0	96	40	10	22	26	1.86
1737889--1737941	20	2.7	19	83	13	63	39	3	18	37	1.69
1738926--1738960	18	1.9	18	88	11	54	22	14	11	51	1.74
1739230--1739313	26	3.2	26	83	9	109	36	10	22	29	1.88
1745209--1745238	13	2.3	13	94	0	51	70	0	0	30	0.88
1747382--1748260	84	10.5	84	87	2	1185	22	19	23	34	1.96
1749007--1749254	95	2.6	95	83	3	293	29	18	18	33	1.95
1758889--1758943	25	2.2	24	78	15	58	18	12	34	34	1.89
1760604--1761543	219	4.3	218	94	1	1650	34	13	13	38	1.84
1761731--1763542	218	8.3	218	97	0	3372	34	13	13	39	1.83
1760604--1763542	654	4.5	654	87	4	4455	33	14	13	38	1.85
1773517--1774760	217	5.7	218	94	0	2154	33	13	12	39	1.83
1777574--1777792	66	3.3	66	87	3	334	36	15	18	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1783960--1784011	20	2.6	20	100	0	104	38	11	28	21	1.88
1784313--1784376	31	2.1	31	96	0	119	32	20	26	20	1.97
1784648--1784863	66	3.3	66	88	0	333	37	14	16	31	1.89
1787847--1787975	23	5.7	23	88	1	181	21	20	26	31	1.98
1787844--1787975	69	1.9	67	89	3	201	21	20	25	31	1.98
1790651--1790793	40	3.5	41	83	11	150	48	2	2	46	1.28
1790688--1790793	40	2.6	42	89	7	173	46	0	3	50	1.19
1790704--1790791	40	2.2	40	100	0	176	45	0	4	50	1.22
1790784--1790818	2	17.5	2	100	0	70	51	0	0	48	1.00
1794720--1795020	36	8.1	35	66	20	116	37	9	19	33	1.84
1794874--1794998	36	3.5	35	73	14	121	43	11	16	29	1.82
1794864--1795073	71	2.9	71	84	6	262	40	10	17	31	1.84
1798613--1798658	10	4.6	10	84	10	67	78	2	2	17	0.96
1799826--1799918	18	5.3	18	83	14	124	39	0	0	60	0.97
1799827--1799929	32	3.3	31	86	10	138	41	0	0	58	0.98
1799826--1799918	3	31.0	3	80	8	109	39	0	0	60	0.97
1800428--1800471	19	2.4	19	80	3	54	56	36	6	0	1.26
1802208--1802261	28	2.0	27	88	3	81	35	5	0	59	1.21
1804602--1804656	21	2.5	22	80	14	60	16	14	9	60	1.59
1808848--1809181	114	2.9	114	94	0	560	33	14	20	31	1.93
1811483--1811537	22	2.5	22	87	0	83	38	9	12	40	1.75
1811922--1812369	76	5.9	76	97	0	844	23	20	22	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1812535--1812651	15	7.6	16	82	12	147	41	0	0	58	0.98
1812535--1812640	3	35.0	3	79	9	117	40	0	0	59	0.97
1817022--1817065	23	2.0	23	81	4	54	50	11	2	36	1.51
1829887--1829944	22	2.6	22	100	0	116	17	41	22	18	1.90
1837120--1837172	25	2.2	24	86	6	72	16	7	3	71	1.24
1837125--1837173	13	3.9	13	75	20	50	20	6	4	69	1.27
1837756--1837797	17	2.5	17	77	11	50	28	11	0	59	1.33
1841273--1841330	23	2.8	20	82	15	57	44	17	20	17	1.86
1841271--1841385	24	4.8	24	84	5	135	40	17	18	23	1.91
1844897--1845242	172	2.0	172	93	0	593	25	24	11	38	1.89
1847785--1847989	76	2.7	77	86	6	267	20	22	32	23	1.98
1850550--1850671	36	3.5	36	76	13	101	41	10	2	45	1.52
1850644--1850790	35	4.3	34	73	16	117	40	8	4	46	1.55
1850756--1850863	36	2.9	37	85	8	134	43	8	2	45	1.48
1850730--1850898	71	2.4	70	85	4	216	43	8	2	44	1.50
1850695--1850898	35	5.8	35	76	10	157	42	9	3	44	1.55
1850730--1850898	36	4.8	35	78	9	128	43	8	2	44	1.50
1852825--1852907	32	2.6	32	92	0	130	38	20	8	32	1.83
1855445--1855492	18	2.7	18	75	18	55	72	0	12	14	1.11
1855596--1855654	16	3.7	16	71	22	52	71	0	5	23	1.06
1855610--1855657	25	1.9	25	87	8	71	66	0	4	29	1.10
1855628--1855719	37	2.6	36	80	11	116	65	2	4	28	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1858163--1858325	68	2.4	68	80	7	181	38	7	20	33	1.82
1859266--1859383	32	3.8	32	83	6	134	34	22	13	29	1.92
1860301--1860435	69	2.0	69	95	0	243	24	13	24	37	1.91
1860521--1860561	12	3.5	12	96	3	75	0	12	0	87	0.53
1860511--1860561	12	4.2	12	85	14	61	0	13	1	84	0.71
1860521--1860567	11	4.3	11	89	7	69	0	12	0	87	0.55
1860511--1860567	23	2.5	22	86	8	78	0	14	1	84	0.71
1865073--1865114	19	2.2	19	87	8	59	76	2	4	16	1.07
1865156--1865202	17	2.7	17	78	12	51	72	0	10	17	1.12
1865300--1865324	13	1.9	13	100	0	50	80	0	8	12	0.92
1865341--1865433	37	2.5	37	81	8	118	65	2	3	29	1.20
1865294--1865424	37	3.6	35	75	9	102	67	0	4	26	1.15
1865475--1865514	14	2.7	14	92	7	62	62	0	2	35	1.09
1865481--1865556	39	1.9	41	84	7	104	67	0	5	27	1.12
1866462--1866538	40	1.9	40	81	5	93	22	25	24	27	2.00
1876990--1877060	30	2.4	30	88	6	101	35	18	2	43	1.65
1878037--1878068	4	7.8	4	93	6	55	28	0	0	71	0.86
1890136--1890165	14	2.1	14	93	0	51	10	26	10	53	1.66
1896623--1896666	23	1.9	23	95	0	79	29	9	20	40	1.83
1900142--1900319	34	5.3	33	65	21	95	42	6	7	43	1.58
1900693--1900728	19	1.9	19	88	5	56	27	8	2	61	1.39
1902408--1902439	16	2.0	16	100	0	64	43	12	6	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1906804--1907063	36	7.3	35	84	10	293	43	3	8	45	1.49
1906805--1907063	37	7.3	35	87	8	307	44	3	8	44	1.49
1909317--1909672	86	4.1	86	86	1	455	37	21	16	24	1.94
1910283--1910381	36	2.8	34	84	13	121	45	3	8	43	1.49
1910290--1910573	38	8.2	35	74	18	181	45	2	7	45	1.43
1910306--1910547	38	6.7	37	76	16	190	46	2	7	44	1.44
1910359--1910423	26	2.5	26	92	0	103	47	0	4	47	1.22
1910359--1910437	26	3.0	26	86	3	86	48	0	3	48	1.19
1910323--1910459	65	2.2	62	89	6	204	46	0	5	47	1.29
1910306--1910496	103	1.9	100	81	9	235	46	2	6	44	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14