genome.fa.s8685.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008685.1 Hibiscus syriacus cultivar Beakdansim tig00111708_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3669133

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  10  of  19  ( 2244 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1836098--1836158	21	2.9	21	77	0	68	24	24	26	24	2.00
1836086--1836172	21	4.1	21	72	5	59	25	21	27	25	2.00
1836710--1836771	31	2.0	31	90	0	97	22	20	12	43	1.86
1836904--1836947	21	2.1	21	91	8	72	22	18	13	45	1.84
1837489--1837535	15	3.2	15	77	14	53	36	2	0	61	1.08
1837483--1837553	23	3.0	23	79	8	72	35	1	2	60	1.20
1842560--1842585	2	13.0	2	100	0	52	0	50	0	50	1.00
1843703--1843772	19	3.7	19	96	0	122	31	21	22	24	1.98
1844861--1844933	30	2.4	30	93	0	119	26	17	23	32	1.97
1846490--1846526	13	2.7	14	84	15	51	43	8	0	48	1.32
1847040--1847091	2	26.0	2	76	7	52	44	9	0	46	1.36
1847202--1847436	2	118.0	2	69	18	136	44	6	3	45	1.47
1854661--1854731	22	3.0	25	64	26	62	40	7	2	49	1.45
1854563--1854731	47	3.7	45	75	7	178	42	5	7	44	1.56
1854774--1854825	25	2.1	25	89	7	79	55	1	11	30	1.46
1855061--1855126	22	3.0	21	72	14	71	37	15	6	40	1.72
1855851--1855890	21	2.0	20	85	5	53	47	5	7	40	1.54
1858196--1858248	26	2.0	26	100	0	106	26	7	47	18	1.75
1858543--1858575	16	2.1	16	88	5	50	54	0	39	6	1.25
1859655--1859683	2	15.0	2	92	7	51	51	0	0	48	1.00
1860938--1861001	21	3.0	20	76	17	58	68	0	14	17	1.21
1862844--1863277	102	4.3	100	74	16	372	41	11	19	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1862946--1863394	65	6.6	65	75	13	379	42	10	19	27	1.84
1863065--1863456	36	11.2	36	72	14	275	41	10	18	29	1.84
1863011--1863455	138	3.2	138	88	2	619	42	10	18	28	1.83
1863361--1863466	34	3.0	33	82	10	97	40	8	18	32	1.81
1868356--1868398	18	2.4	18	100	0	86	39	18	0	41	1.51
1880471--1880505	18	1.9	18	88	11	54	51	8	0	40	1.33
1884065--1884161	42	2.3	42	83	0	122	29	35	16	18	1.93
1884276--1884325	21	2.4	21	89	0	82	20	14	32	34	1.92
1884725--1884885	21	7.6	21	90	1	223	21	39	18	21	1.93
1885392--1885449	20	2.9	20	78	0	71	32	15	22	29	1.95
1885950--1886015	19	3.7	18	73	13	57	10	7	0	81	0.86
1885950--1886006	19	3.0	20	75	19	59	12	7	0	80	0.89
1886026--1886058	17	1.9	17	93	0	57	21	0	0	78	0.75
1889847--1890591	110	6.9	110	85	4	1006	36	22	17	24	1.95
1890704--1891195	84	5.9	84	82	2	551	31	23	19	26	1.98
1890704--1891195	167	2.9	168	81	2	587	31	23	19	26	1.98
1891743--1891777	18	1.9	18	88	11	54	51	8	0	40	1.33
1893394--1893507	17	7.0	16	72	20	60	19	6	0	74	1.02
1893441--1893492	17	3.2	16	86	10	70	21	3	0	75	0.97
1894369--1894427	31	1.9	31	89	0	91	40	5	10	44	1.60
1894452--1894494	22	2.0	22	100	0	86	51	13	0	34	1.42
1894454--1894502	22	2.2	22	88	3	71	55	14	0	30	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1894442--1894844	54	7.6	54	80	12	440	51	11	0	36	1.41
1894474--1894920	32	15.4	32	65	28	193	52	10	0	36	1.40
1894694--1894749	22	2.5	22	97	0	103	50	10	0	39	1.37
1894856--1894956	22	4.5	22	69	6	78	53	7	0	38	1.30
1894659--1895009	54	6.8	50	75	17	271	52	8	0	39	1.32
1894443--1894986	108	5.2	104	74	14	376	52	9	0	37	1.38
1894738--1894920	86	2.1	85	91	1	294	55	8	0	36	1.30
1894796--1894971	36	5.1	34	75	13	139	54	7	0	37	1.30
1894897--1894986	15	5.7	15	79	15	101	53	3	0	43	1.17
1905166--1905206	21	2.0	22	90	9	68	43	9	9	36	1.71
1905165--1905213	21	2.3	22	82	10	66	42	8	8	40	1.64
1908377--1908559	91	2.0	91	91	0	294	20	27	22	28	1.99
1914315--1914358	21	2.1	21	86	0	61	29	27	27	15	1.96
1914385--1914429	22	2.0	22	86	4	63	31	33	26	8	1.87
1915743--1915778	18	2.0	18	100	0	72	11	22	33	33	1.89
1915640--1916003	121	3.0	121	95	0	656	24	14	25	35	1.93
1915864--1915899	18	2.0	18	100	0	72	11	22	33	33	1.89
1915715--1915901	62	3.1	62	65	26	171	24	14	25	35	1.93
1916010--1916070	23	2.7	23	86	0	86	21	26	26	26	1.99
1916001--1916078	23	3.3	23	80	1	75	24	20	21	33	1.97
1919879--1919923	22	2.0	22	86	4	63	31	33	26	8	1.87
1921237--1921272	18	2.0	18	100	0	72	11	22	33	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1921134--1921497	121	3.0	121	94	0	647	25	14	24	36	1.93
1921358--1921393	18	2.0	18	94	0	63	11	19	33	36	1.87
1921209--1921395	62	3.1	62	65	23	160	24	13	25	36	1.92
1921508--1921556	23	2.1	23	92	0	80	22	26	24	26	2.00
1921508--1921564	23	2.5	23	88	0	69	22	26	24	26	2.00
1921508--1921572	23	2.8	23	85	0	58	23	23	23	30	1.99
1929216--1929262	19	2.4	21	76	20	57	68	0	0	31	0.90
1930264--1930316	20	2.7	20	93	0	88	41	18	18	20	1.91
1930285--1930395	41	2.7	41	88	2	125	31	25	20	22	1.98
1930305--1930379	21	3.7	20	74	16	73	30	26	21	21	1.98
1930326--1930411	20	4.2	20	82	8	111	27	26	20	24	1.99
1930581--1930653	22	3.3	22	86	0	110	23	43	12	20	1.85
1931027--1931100	20	3.7	20	85	3	78	14	17	24	43	1.87
1931048--1931103	20	2.8	20	91	0	85	12	16	21	50	1.78
1931067--1931110	20	2.2	20	91	0	70	11	13	20	54	1.69
1932928--1932991	31	2.0	31	88	8	94	20	7	17	54	1.67
1933112--1933288	20	9.4	20	72	14	117	36	22	20	19	1.95
1933163--1933282	34	3.4	34	76	13	141	36	23	21	18	1.95
1933117--1933289	74	2.3	74	89	3	276	35	21	21	20	1.96
1933112--1933282	34	4.6	40	72	13	125	36	22	20	19	1.95
1933283--1933329	19	2.5	19	85	0	67	10	12	27	48	1.74
1933347--1933389	20	2.2	20	91	4	70	16	11	18	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1933866--1933977	42	2.7	42	80	2	136	19	37	18	24	1.94
1933870--1933971	21	4.9	21	72	8	82	20	35	19	24	1.96
1935534--1935776	20	12.8	20	76	11	215	23	19	21	35	1.96
1935652--1935729	34	2.3	34	97	0	147	19	23	20	37	1.95
1935951--1935985	18	1.9	18	94	0	61	17	2	25	54	1.57
1938979--1939084	20	5.3	20	88	0	158	25	18	27	28	1.98
1939200--1939246	19	2.4	19	82	3	58	25	14	29	29	1.95
1939212--1939248	19	1.9	19	94	0	65	21	16	29	32	1.95
1939550--1939576	3	9.0	3	100	0	54	66	0	0	33	0.92
1957654--1957718	23	2.8	23	88	4	87	29	26	16	27	1.97
1964687--1964743	18	3.2	18	75	9	55	43	0	14	42	1.44
1965038--1965082	3	15.0	3	100	0	90	33	0	0	66	0.92
1970419--1970452	17	2.0	17	94	0	59	47	8	11	32	1.71
1982587--1982632	18	2.7	17	90	6	67	30	6	34	28	1.82
1983439--1983523	36	2.3	37	87	6	118	42	32	10	14	1.79
1983155--1983747	250	2.4	239	86	7	816	36	27	11	24	1.90
1983906--1983965	27	2.2	27	96	0	111	25	13	20	41	1.88
1985649--1985673	2	12.5	2	100	0	50	48	0	0	52	1.00
1987067--1987122	19	2.9	19	85	12	78	16	21	28	33	1.95
1987067--1987115	10	4.8	11	83	16	70	16	20	26	36	1.93
1987068--1987122	9	5.6	10	83	12	78	14	21	29	34	1.93
1987126--1987207	13	6.3	13	72	25	59	17	46	23	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1987125--1987201	17	4.4	18	93	3	131	16	48	23	11	1.79
1987237--1987303	28	2.4	28	82	2	80	29	5	20	43	1.76
1988006--1988074	24	2.9	24	73	0	66	24	11	18	44	1.83
1988776--1988812	16	2.2	17	86	13	51	70	0	0	29	0.88
1989238--1989283	21	2.1	22	84	11	60	47	0	2	50	1.13
1989238--1989300	21	3.0	20	80	17	58	38	1	4	55	1.31
1990536--1990561	13	2.0	13	100	0	52	76	0	0	23	0.78
1990496--1990574	10	8.2	9	72	12	59	77	3	3	15	1.06
1990763--1990858	40	2.5	40	72	16	94	67	1	4	27	1.15
1990950--1991044	22	4.2	22	69	20	54	66	1	5	27	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19