genome.fa.s8685.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008685.1 Hibiscus syriacus cultivar Beakdansim tig00111708_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3669133

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  2  of  19  ( 2244 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215430--215591	64	2.5	65	76	8	161	32	20	20	26	1.97
215560--215633	20	3.6	20	72	15	62	27	22	27	22	2.00
216370--216587	103	2.1	103	93	0	373	26	13	22	37	1.91
216604--216669	23	2.9	23	83	0	69	24	21	24	30	1.99
219883--219956	31	2.5	30	82	8	98	50	8	21	20	1.74
228648--228692	2	22.5	2	100	0	90	48	0	0	51	1.00
233661--233722	20	2.9	21	83	7	72	16	25	32	25	1.96
242653--242704	20	2.6	20	93	0	95	38	17	19	25	1.93
242980--243057	20	3.9	19	80	8	75	33	23	20	23	1.97
242979--243056	41	1.9	41	84	5	104	33	24	19	23	1.97
247140--247301	64	2.5	65	77	8	170	32	21	20	25	1.98
248088--248305	103	2.1	103	92	0	373	27	14	22	36	1.92
248321--248387	23	2.9	23	79	0	71	23	20	25	29	1.99
251291--251364	37	2.0	36	84	10	96	45	1	2	50	1.24
251619--251707	31	2.9	30	83	6	108	50	8	17	22	1.74
258717--258821	44	2.5	41	76	14	106	49	7	15	27	1.71
258678--258824	41	3.4	41	74	11	109	49	5	17	27	1.68
262212--262283	20	3.6	20	82	10	85	31	27	19	20	1.97
262312--262377	20	3.1	20	75	16	62	31	28	15	24	1.95
262236--262421	93	2.0	93	95	4	340	34	22	18	24	1.96
276146--276187	11	4.0	11	81	12	52	50	2	0	47	1.14
276148--276191	20	2.2	20	87	0	61	52	2	0	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276534--276565	3	10.7	3	100	0	64	31	68	0	0	0.90
276839--276888	11	4.8	11	75	22	54	36	26	32	6	1.81
276840--276905	30	2.2	30	83	0	87	37	25	27	9	1.86
277127--277183	24	2.3	24	90	3	87	38	15	19	26	1.92
279380--279420	20	1.9	21	85	14	57	41	2	0	56	1.13
281309--281355	13	3.5	13	77	13	51	55	2	2	40	1.24
281329--281371	15	2.6	16	85	10	52	48	0	0	51	1.00
282632--282656	12	2.1	12	100	0	50	40	32	12	16	1.84
282707--282783	9	7.3	11	75	21	60	58	0	0	41	0.98
282713--282781	3	23.3	3	82	2	86	59	0	0	40	0.97
283081--284787	228	7.5	228	98	0	3288	29	20	13	36	1.91
285509--285969	83	5.6	83	96	0	850	38	23	13	24	1.91
287125--287174	12	4.2	12	78	14	59	0	18	0	82	0.68
287123--287173	9	5.8	9	81	4	59	0	15	0	84	0.63
298482--298528	13	3.5	13	77	13	51	55	2	2	40	1.24
299877--299947	3	24.7	3	75	13	60	61	0	0	38	0.96
300758--300837	32	2.5	32	86	6	101	27	8	25	38	1.85
301679--301721	21	2.0	21	81	0	50	27	27	25	18	1.98
301748--301785	20	1.9	20	94	0	67	23	31	31	13	1.93
302972--303071	31	3.2	30	78	12	94	31	17	19	33	1.94
303082--303424	30	11.4	30	98	0	659	23	19	23	33	1.97
306356--306398	21	2.0	21	81	0	50	27	27	25	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306425--306462	20	1.9	20	94	0	67	23	31	31	13	1.93
307646--307745	31	3.2	30	78	12	94	31	17	19	33	1.94
307731--308038	30	10.2	30	97	0	553	23	19	23	33	1.97
310546--310780	20	11.6	20	79	8	192	39	24	17	18	1.92
310607--310697	41	2.2	41	86	3	121	39	26	17	16	1.91
311015--311116	34	2.9	36	89	5	163	44	12	15	27	1.83
311701--311735	16	2.1	18	89	10	56	25	8	0	65	1.21
314399--314437	8	5.0	8	84	6	53	10	17	12	58	1.61
315606--315676	10	7.4	10	73	10	51	77	8	14	0	0.98
315600--315674	38	2.0	38	84	5	98	77	8	14	0	0.98
316317--316365	22	2.2	22	92	0	80	32	24	14	28	1.94
317252--317575	72	4.6	73	75	10	212	26	19	14	38	1.91
317294--317575	36	8.0	36	78	8	303	26	19	13	40	1.89
317350--317538	102	1.9	102	86	4	274	26	19	13	40	1.88
317314--317638	138	2.4	137	84	2	436	27	20	12	39	1.88
317550--317706	68	2.4	68	84	3	203	32	22	8	35	1.86
318350--319286	105	9.0	105	93	1	1452	33	26	17	22	1.96
319834--319935	34	2.9	36	89	5	163	44	12	15	27	1.83
320380--320410	2	15.5	2	100	0	62	48	0	0	51	1.00
320528--320562	16	2.1	18	89	10	56	25	8	0	65	1.21
321353--321442	20	4.8	20	72	15	68	48	20	18	12	1.79
321409--321453	19	2.4	19	92	0	72	46	26	17	8	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321471--321527	14	3.7	14	75	20	60	8	24	22	43	1.81
321454--321575	33	3.5	33	91	8	181	9	23	18	47	1.79
321449--321575	20	7.1	19	75	20	130	10	24	18	46	1.80
321642--321698	25	2.3	26	76	14	66	21	8	17	52	1.71
323270--323648	94	4.1	94	94	1	638	21	11	18	47	1.81
323270--323648	187	2.0	187	93	2	645	21	11	18	47	1.81
323696--323820	19	6.7	19	76	13	116	45	24	19	11	1.82
323832--323933	19	5.5	19	76	13	88	13	20	17	48	1.81
323843--323878	14	2.8	13	88	12	56	16	22	11	50	1.77
324386--324453	21	3.2	21	67	6	57	23	35	20	20	1.96
325790--325825	14	2.6	14	95	0	63	33	0	22	44	1.53
325932--326030	19	5.7	19	65	24	58	47	20	18	14	1.82
325932--326025	33	2.8	32	87	3	125	46	20	18	14	1.83
325964--326040	19	4.3	19	73	15	74	46	22	14	16	1.83
326119--326172	20	2.8	19	83	5	72	16	20	20	42	1.89
326040--326182	33	4.2	33	85	10	196	12	22	19	45	1.84
326073--326213	72	1.9	73	88	1	212	15	19	20	43	1.87
328720--328773	24	2.2	24	93	0	90	40	20	18	20	1.91
329626--329845	20	10.9	19	70	13	95	21	17	23	37	1.94
329631--329822	60	3.2	60	79	8	203	20	17	22	39	1.93
329631--329786	20	7.8	20	80	11	135	19	17	23	39	1.92
329629--329822	40	4.8	40	82	3	192	20	18	22	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
334007--334215	66	3.2	66	87	0	283	32	23	13	30	1.93
346491--346548	29	2.0	29	83	12	75	56	5	1	36	1.32
354186--354261	41	1.9	40	84	10	102	23	21	13	42	1.88
360220--360259	20	2.0	20	85	9	55	50	0	2	47	1.14
360220--360260	21	2.0	20	85	4	55	51	0	2	46	1.14
360993--361030	11	3.3	12	85	10	53	5	26	0	68	1.11
360993--361036	22	2.0	22	86	8	63	6	27	0	65	1.17
363443--363554	21	5.3	21	75	16	124	19	19	21	39	1.93
363438--363561	42	3.0	42	90	0	194	20	20	20	37	1.95
363647--363689	6	7.5	6	92	2	54	34	48	16	0	1.46
364367--364587	110	2.0	110	97	1	417	32	18	13	36	1.89
369226--369256	16	1.9	16	100	0	62	19	6	19	54	1.65
373579--373617	19	2.1	19	85	9	53	30	15	7	46	1.74
373739--373777	20	2.0	20	84	0	51	30	23	10	35	1.88
384562--384788	44	5.2	43	80	11	248	48	7	20	23	1.75
384562--384788	87	2.6	88	80	7	268	48	7	20	23	1.75
387424--387471	15	3.1	15	74	14	53	52	0	0	47	1.00
389406--389718	153	2.0	153	98	0	608	27	15	19	37	1.92
394484--394564	41	2.0	41	92	0	135	34	3	28	33	1.75
395497--395579	34	2.4	34	96	4	150	34	25	10	28	1.90
398999--399137	62	2.2	62	94	1	251	30	17	17	35	1.93
405237--405451	74	2.9	74	94	1	378	33	12	19	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408955--409047	21	4.5	21	78	4	100	39	18	24	17	1.91
408955--409047	41	2.3	41	100	0	186	39	18	24	17	1.91
408974--409108	41	3.3	41	84	4	148	37	21	20	20	1.94
409036--409129	20	4.7	20	80	7	91	32	25	17	24	1.96
409683--409727	19	2.4	19	88	0	63	48	24	15	11	1.77
409723--409873	19	8.1	19	82	10	177	11	21	21	45	1.84
409723--409873	39	4.1	38	78	10	177	11	21	21	45	1.84
411791--411826	14	2.6	14	95	0	63	30	0	25	44	1.54
412006--412156	19	8.7	19	63	21	71	15	21	20	42	1.89
412010--412136	33	3.9	32	86	8	184	14	22	19	43	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19