genome.fa.s8685.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008685.1 Hibiscus syriacus cultivar Beakdansim tig00111708_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3669133

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  8  of  19  ( 2244 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1471977--1472018	3	14.0	3	100	0	84	0	33	0	66	0.92
1472040--1472080	21	2.0	21	100	0	82	34	39	7	19	1.80
1472079--1472941	3	294.0	3	95	4	1561	0	32	0	67	0.91
1471912--1472121	106	2.0	106	96	2	390	19	33	7	40	1.79
1473767--1473812	10	4.7	10	79	12	51	21	23	26	28	1.99
1473843--1474022	29	6.3	29	77	8	136	29	6	21	42	1.77
1473872--1474052	29	6.3	29	73	12	142	29	6	20	43	1.76
1474540--1474766	117	1.9	117	87	3	332	21	15	32	30	1.95
1477000--1477040	19	2.2	19	86	8	57	75	0	2	21	0.92
1477000--1477077	5	15.6	5	74	15	63	74	3	2	19	1.09
1478727--1478772	3	15.0	3	81	4	56	67	0	4	28	1.10
1478980--1479319	134	2.5	135	87	3	481	25	17	31	25	1.97
1479527--1479753	91	2.5	89	82	12	291	44	14	12	28	1.82
1479603--1479860	30	8.6	29	71	17	143	43	13	13	29	1.82
1479856--1480044	64	2.9	67	82	7	244	46	13	8	31	1.73
1479946--1480145	105	1.9	102	82	8	244	42	14	9	33	1.78
1479895--1480316	168	2.5	169	89	2	629	42	13	10	33	1.78
1480063--1480209	63	2.3	65	87	9	212	45	16	10	27	1.79
1480378--1480472	37	2.6	36	74	9	93	40	11	16	31	1.85
1480478--1480778	106	2.9	102	76	11	311	40	11	15	31	1.84
1484510--1484571	32	2.0	32	93	3	108	59	9	16	14	1.60
1486309--1486411	5	20.6	5	75	14	70	73	3	4	17	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1488299--1488683	135	2.9	134	82	6	460	25	18	30	25	1.98
1488896--1489117	91	2.4	89	80	12	263	44	13	12	28	1.81
1488970--1489027	29	2.0	29	86	3	80	46	10	12	31	1.74
1489058--1489222	29	5.6	29	81	9	154	41	13	14	29	1.85
1489063--1489222	63	2.7	58	81	9	164	43	14	13	28	1.84
1489224--1489409	64	2.9	64	79	10	173	43	15	9	31	1.79
1489320--1489511	103	1.9	100	82	7	244	41	14	10	33	1.80
1489257--1489611	167	2.1	168	92	2	581	41	13	10	33	1.79
1489538--1489610	38	1.9	38	83	5	94	35	8	10	45	1.69
1489737--1489847	37	3.1	35	75	8	107	37	11	18	32	1.87
1489843--1490141	107	2.8	104	79	8	361	40	12	16	30	1.85
1490450--1490489	16	2.5	16	83	0	53	27	0	25	47	1.52
1491788--1491823	14	2.6	14	86	4	56	0	11	11	77	0.99
1495660--1495743	5	16.6	5	77	11	73	73	3	3	19	1.12
1495676--1495742	25	2.8	24	84	9	82	74	4	4	16	1.14
1498039--1498103	3	22.0	3	96	3	123	33	0	0	66	0.92
1510742--1510854	43	2.6	43	83	5	147	29	19	14	37	1.91
1510735--1510883	43	3.5	41	80	7	138	32	20	14	32	1.93
1513568--1513642	39	1.9	39	94	0	132	36	6	24	33	1.81
1513941--1514042	53	1.9	53	82	4	125	52	9	5	31	1.58
1517638--1517735	39	2.5	39	85	8	128	38	2	37	21	1.65
1518659--1518716	19	3.2	18	73	23	59	51	32	12	3	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1522230--1522379	31	4.8	31	96	1	266	19	19	23	38	1.94
1525096--1525194	39	2.5	39	82	8	121	40	2	36	21	1.65
1528377--1528409	16	2.1	16	100	0	66	21	6	18	54	1.64
1535136--1535176	8	5.2	8	82	5	57	34	0	29	36	1.58
1535257--1535589	128	2.6	128	94	0	569	21	23	21	34	1.97
1535566--1535609	20	2.2	20	95	0	79	22	25	6	45	1.77
1536019--1536122	34	3.2	32	80	12	113	36	2	4	55	1.36
1536633--1536744	21	5.3	20	88	7	152	19	25	35	18	1.95
1536630--1536738	42	2.6	42	97	0	200	22	25	33	18	1.96
1537480--1537970	245	2.0	243	92	7	818	32	26	18	22	1.97
1538335--1538399	27	2.4	27	82	5	69	58	4	0	36	1.19
1538351--1538404	17	3.2	17	78	2	56	59	3	0	37	1.15
1538552--1538616	15	4.3	15	75	14	62	55	0	0	44	0.99
1538559--1538615	14	4.3	14	73	8	57	52	0	0	47	1.00
1538829--1538977	60	2.5	60	85	3	174	20	32	31	14	1.93
1542667--1542715	18	2.7	18	80	3	53	42	10	2	44	1.49
1542737--1542870	29	4.5	29	82	5	151	39	6	1	52	1.37
1542739--1542868	60	2.2	60	85	2	172	39	6	1	52	1.38
1542926--1543012	25	3.3	24	77	19	84	52	1	6	39	1.36
1542877--1543180	30	10.3	29	75	10	199	49	1	8	41	1.42
1543689--1543715	2	13.5	2	100	0	54	51	0	0	48	1.00
1547232--1547296	8	8.4	8	71	6	53	69	3	3	24	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1547231--1547296	23	2.9	23	80	6	80	69	3	3	24	1.16
1549420--1549487	22	3.1	22	80	0	82	63	17	10	8	1.51
1549454--1549507	16	3.4	16	84	0	63	59	18	12	9	1.60
1549728--1549771	11	3.9	11	85	5	61	29	25	20	25	1.99
1549705--1549772	23	2.9	23	76	8	66	32	25	20	22	1.98
1550641--1550671	14	2.2	14	94	0	53	54	22	12	9	1.67
1550634--1550682	24	2.0	24	92	0	80	53	24	14	8	1.68
1563830--1563889	2	30.5	2	83	9	70	43	0	1	55	1.10
1564067--1564112	21	2.2	21	84	7	58	15	2	6	76	1.09
1569899--1569973	35	2.1	36	80	11	84	48	4	0	48	1.20
1569958--1569983	2	13.0	2	100	0	52	50	0	0	50	1.00
1570608--1570648	16	2.6	16	92	3	66	31	21	9	36	1.86
1572956--1573018	24	2.6	24	97	2	117	38	3	7	50	1.47
1576914--1576943	15	1.9	16	93	6	53	43	0	3	53	1.17
1577127--1577155	14	2.1	14	100	0	58	27	13	17	41	1.87
1579346--1579392	16	2.8	16	87	6	58	46	2	2	48	1.25
1587788--1587864	31	2.5	31	95	4	138	23	10	15	50	1.74
1588908--1588946	16	2.4	16	100	0	78	51	5	25	17	1.66
1589151--1589258	31	3.5	31	96	0	189	52	14	12	20	1.73
1589930--1590030	50	2.0	50	84	3	132	34	7	2	54	1.45
1590659--1590790	67	2.0	67	90	0	210	32	25	15	25	1.96
1595939--1596001	19	3.3	19	81	2	63	60	0	4	34	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1596631--1596660	15	2.0	15	93	0	51	6	16	33	43	1.74
1597490--1597517	14	2.0	14	100	0	56	50	14	0	35	1.43
1602786--1602891	52	2.0	52	88	0	158	27	22	23	26	2.00
1613432--1613490	13	4.9	13	72	19	65	35	11	0	52	1.38
1613412--1613511	34	2.9	34	90	0	155	35	7	0	58	1.25
1613481--1613522	22	2.0	22	90	4	68	33	2	0	64	1.07
1613713--1613742	13	2.4	12	89	10	51	46	10	13	30	1.75
1621090--1621154	5	13.0	5	100	0	130	40	0	20	40	1.52
1622310--1622417	51	2.1	52	86	8	150	34	11	4	50	1.59
1623791--1623818	14	2.0	14	100	0	56	42	0	0	57	0.99
1624933--1624977	16	2.9	16	81	15	58	35	2	0	62	1.08
1628047--1628143	51	1.9	51	87	6	144	52	4	10	32	1.54
1631891--1631949	3	20.3	3	81	13	70	64	1	0	33	1.04
1631891--1631949	26	2.3	26	85	5	75	64	1	0	33	1.04
1632425--1632485	18	3.2	18	69	17	52	19	22	4	52	1.65
1632396--1632732	126	2.9	113	83	10	394	30	18	13	37	1.90
1632617--1632644	13	2.2	13	100	0	56	35	10	21	32	1.88
1633490--1633547	22	2.6	22	97	0	107	36	13	17	32	1.89
1646484--1646546	21	2.9	21	83	4	63	20	38	25	15	1.92
1646528--1646567	21	1.9	21	89	0	62	25	40	25	10	1.86
1650770--1650855	43	2.0	43	88	0	127	36	23	9	31	1.86
1652824--1652855	16	1.9	17	93	6	57	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1652971--1653014	21	2.1	21	84	16	56	54	0	6	38	1.27
1653126--1653202	27	2.8	27	77	13	77	62	3	3	29	1.31
1654485--1654534	3	17.3	3	78	15	52	64	2	0	34	1.05
1654480--1654511	14	2.3	14	94	0	55	56	0	3	40	1.15
1654486--1654533	17	2.8	17	84	6	53	66	2	0	31	1.03
1654485--1654534	20	2.5	19	83	6	55	64	2	0	34	1.05
1655621--1655691	32	2.2	32	97	2	135	40	16	16	25	1.90
1656517--1656939	159	2.7	157	79	4	440	29	17	6	46	1.73
1657664--1657804	75	1.9	75	85	2	194	28	14	9	47	1.75
1658396--1658483	32	2.7	32	96	1	158	46	15	5	31	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19