genome.fa.s8685.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008685.1 Hibiscus syriacus cultivar Beakdansim tig00111708_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3669133

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  19  of  19  ( 2244 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3539063--3539091	15	1.9	15	100	0	58	48	0	13	37	1.43
3540554--3540588	18	2.1	18	89	10	56	54	0	0	45	0.99
3540903--3540977	36	2.1	35	82	9	89	57	0	1	41	1.07
3541875--3541915	15	2.8	15	85	14	59	75	0	0	24	0.80
3541883--3541913	14	2.3	14	94	5	55	80	0	0	19	0.71
3543815--3543860	23	2.0	23	95	0	83	23	13	36	26	1.91
3546873--3546916	21	2.1	21	86	0	61	29	27	27	15	1.96
3546942--3546985	22	2.0	22	86	0	61	31	31	27	9	1.88
3548353--3548562	103	2.0	103	100	0	420	27	13	23	36	1.92
3548582--3548692	46	2.4	46	95	0	204	23	26	24	26	2.00
3548582--3548700	23	5.3	23	79	2	134	23	24	23	28	2.00
3552444--3552487	21	2.1	21	86	0	61	29	27	27	15	1.96
3552513--3552557	22	2.0	22	86	4	63	31	33	26	8	1.87
3553925--3554142	103	2.1	103	100	0	436	26	13	23	36	1.92
3554154--3554226	23	3.3	23	76	3	78	24	23	21	30	1.99
3555393--3555432	21	1.9	21	94	0	71	35	25	25	15	1.94
3567477--3567509	13	2.4	14	85	10	50	42	0	0	57	0.98
3568018--3568094	39	2.0	39	87	5	113	57	7	12	22	1.61
3571004--3571099	42	2.3	42	98	0	183	34	43	7	14	1.73
3571192--3571252	27	2.3	27	83	11	81	36	47	1	14	1.55
3571302--3571327	3	8.7	3	100	0	52	30	69	0	0	0.89
3571563--3571707	45	3.0	45	83	9	137	28	38	10	22	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3571529--3571707	99	1.8	99	90	0	286	27	38	10	23	1.88
3571630--3571711	27	3.0	27	63	19	71	26	36	13	23	1.92
3571608--3571711	54	1.9	54	96	0	190	26	37	12	23	1.90
3573300--3573328	15	2.0	15	93	6	51	48	0	3	48	1.18
3573844--3573894	25	2.0	25	84	0	66	31	17	15	35	1.92
3582404--3582436	16	2.1	16	94	5	59	42	12	24	21	1.86
3582571--3582645	37	2.0	37	82	10	91	50	4	0	45	1.20
3584704--3584768	32	2.1	32	94	2	114	33	18	6	41	1.75
3585713--3585750	20	2.0	19	90	10	60	47	10	23	18	1.79
3586250--3586280	4	7.5	4	92	7	53	29	0	0	70	0.87
3586222--3586280	8	6.9	9	75	14	54	35	3	0	61	1.13
3587447--3587662	118	1.8	117	91	1	360	46	17	9	26	1.78
3593200--3593243	15	2.9	15	86	0	61	27	18	22	31	1.97
3593253--3593318	27	2.4	27	100	0	132	39	18	15	27	1.90
3593372--3593412	16	2.6	16	84	3	57	39	21	4	34	1.75
3600936--3601020	37	2.3	36	82	7	100	34	5	17	42	1.74
3605499--3605610	37	3.2	36	81	9	115	33	7	18	40	1.78
3607798--3607849	27	1.9	27	84	0	68	30	36	17	15	1.91
3609757--3609797	19	2.0	20	86	9	57	41	21	19	17	1.90
3623790--3623854	31	2.1	31	97	0	121	29	10	10	49	1.71
3624014--3624102	23	3.5	26	80	13	96	53	0	3	42	1.17
3625534--3625564	14	2.3	14	94	5	55	74	12	12	0	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3629033--3629076	2	22.0	2	100	0	88	50	0	0	50	1.00
3633661--3633717	15	3.7	15	73	15	53	50	0	3	45	1.18
3636269--3636303	18	1.9	18	94	0	61	25	17	28	28	1.97
3641972--3642006	17	1.9	18	88	11	54	45	0	5	48	1.26
3642258--3642288	14	2.2	14	94	0	53	51	12	9	25	1.70
3642400--3642444	24	2.0	22	86	8	63	53	0	0	46	1.00
3642402--3642467	20	3.0	21	78	10	71	50	1	0	48	1.10
3642508--3642637	42	3.5	36	75	15	95	49	3	2	45	1.30
3642771--3642801	8	4.0	8	91	8	55	48	0	0	51	1.00
3642770--3642806	15	2.6	14	91	8	65	51	0	0	48	1.00
3644717--3644741	13	1.9	13	100	0	50	40	4	0	56	1.18
3645143--3645186	20	2.2	20	92	4	72	43	29	2	25	1.67
3645920--3645948	9	3.2	9	100	0	58	65	10	0	24	1.23
3646768--3646840	25	3.0	23	70	18	60	64	0	6	28	1.19
3648756--3648825	27	2.4	29	81	6	81	22	0	20	57	1.41
3648754--3648851	29	3.4	29	78	9	87	26	1	17	55	1.49
3649443--3649494	21	2.5	21	84	3	61	53	5	11	28	1.60
3649462--3649511	21	2.4	21	96	0	91	52	6	12	30	1.62
3649462--3649519	21	2.8	21	89	2	73	50	8	13	27	1.71
3651585--3651666	22	3.7	22	68	0	65	39	23	14	23	1.91
3655238--3655304	31	2.2	30	97	2	125	34	38	13	13	1.84
3655703--3655764	30	2.1	31	87	6	92	32	12	9	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3657476--3657598	41	3.0	39	89	7	131	56	12	6	24	1.59
3657984--3658022	20	2.0	20	94	0	69	35	17	20	25	1.95
3658020--3658245	20	11.4	19	80	12	158	38	24	15	21	1.92
3658004--3658226	40	5.6	41	76	16	202	39	23	16	21	1.92
3658014--3658193	60	3.0	59	80	15	251	40	23	16	19	1.91
3657974--3658192	120	1.8	121	96	1	413	39	23	16	20	1.92
3658174--3658260	19	4.4	19	89	4	120	33	22	11	32	1.90
3658027--3658226	60	3.3	59	80	12	221	39	24	16	21	1.92
3658034--3658271	40	6.0	39	73	13	116	37	23	14	24	1.92
3659219--3659278	24	2.5	24	94	0	102	26	15	18	40	1.90
3661859--3662031	66	2.6	65	89	7	258	52	17	2	27	1.56
3663378--3663471	21	4.5	21	78	6	93	25	18	35	21	1.95
3663752--3663801	21	2.4	21	79	0	55	34	28	16	22	1.95
3666022--3666078	22	2.6	22	91	0	96	17	19	43	19	1.88
3666232--3666338	20	5.3	19	71	10	70	23	11	19	45	1.82
3666333--3666378	20	2.3	20	80	0	56	23	17	19	39	1.92
3666368--3666543	20	8.8	20	78	12	184	21	17	25	36	1.94
3666825--3666917	41	2.3	41	81	7	125	27	21	13	36	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19

The End!