genome.fa.s8685.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008685.1 Hibiscus syriacus cultivar Beakdansim tig00111708_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3669133

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  3  of  19  ( 2244 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412003--412135	66	2.0	66	95	0	239	16	21	19	42	1.89
414625--414678	24	2.2	24	90	0	81	38	20	16	24	1.92
415712--415769	20	2.9	20	94	0	98	37	22	22	17	1.93
415793--415850	14	3.8	14	79	20	71	10	20	18	50	1.76
415775--415845	33	2.2	33	84	0	88	19	19	21	39	1.93
415788--415941	19	8.6	19	86	11	220	13	22	18	46	1.84
417933--417978	20	2.3	20	88	3	67	34	23	23	17	1.96
417943--417998	20	2.8	20	78	2	60	41	21	21	16	1.90
417988--418045	14	3.9	14	79	16	71	48	25	17	8	1.75
417972--418050	32	2.4	33	93	2	133	48	24	17	10	1.78
418057--418152	19	5.6	17	72	21	78	11	19	22	45	1.82
418079--418136	14	3.9	14	79	16	71	8	17	25	48	1.75
418062--418152	32	2.8	33	94	3	166	10	18	23	47	1.80
418137--418182	20	2.4	19	82	7	56	17	23	21	36	1.94
418146--418190	20	2.3	19	92	3	72	15	20	26	37	1.92
418126--418190	19	3.4	19	80	4	76	15	20	24	40	1.91
418663--418707	18	2.5	18	85	0	63	11	15	46	26	1.79
420243--420286	22	2.0	22	95	0	79	18	15	45	20	1.85
420454--420567	20	5.7	20	77	10	90	25	16	24	33	1.96
420556--420648	20	4.5	21	75	4	91	16	24	18	40	1.90
420495--420629	41	3.3	41	83	4	139	19	20	21	38	1.94
420556--420648	41	2.3	41	96	0	177	16	24	18	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420727--420772	19	2.3	20	81	7	58	21	17	32	28	1.96
421335--421498	60	2.7	61	79	11	171	39	4	20	35	1.74
431206--431237	15	2.1	15	94	0	55	65	0	0	34	0.93
438181--438215	8	4.6	8	89	10	56	42	0	0	57	0.99
438181--438215	15	2.3	15	100	0	70	42	0	0	57	0.99
438666--438718	3	17.7	3	96	0	97	1	33	0	64	1.05
439251--439435	64	2.9	64	82	6	207	32	21	21	24	1.98
439299--439475	64	2.8	64	84	5	198	32	21	20	25	1.98
439985--440299	31	10.2	31	94	0	558	39	11	15	34	1.83
440082--440135	16	3.4	16	67	23	51	38	12	16	31	1.87
440098--440181	15	5.5	15	67	25	59	39	11	15	33	1.84
444075--444144	19	3.8	19	64	27	51	22	35	24	17	1.95
444326--444365	20	1.9	21	85	10	55	37	37	10	15	1.80
450632--450682	24	2.1	24	85	7	68	13	11	15	58	1.63
451540--451572	11	2.8	12	86	9	50	27	15	24	33	1.95
451762--451825	16	4.0	16	72	8	67	12	7	20	59	1.58
451776--451819	22	2.0	22	86	0	61	13	9	20	56	1.64
451891--451923	16	2.1	16	94	0	57	6	9	24	60	1.49
452670--453122	182	2.5	179	93	1	746	27	16	13	42	1.86
453141--453189	20	2.5	20	83	3	73	14	16	12	57	1.66
452993--453419	111	3.8	112	90	1	649	25	15	13	45	1.82
452993--453406	224	1.9	223	90	2	661	25	15	13	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458075--458144	34	2.1	34	91	0	113	42	11	12	32	1.79
458084--458200	34	3.6	34	68	15	93	44	11	13	30	1.79
458558--458600	18	2.5	17	81	7	52	25	2	2	69	1.12
458655--458685	2	15.5	2	100	0	62	48	0	0	51	1.00
459113--459140	2	14.0	2	100	0	56	50	0	0	50	1.00
462885--462936	16	3.2	16	79	15	54	78	7	13	0	0.94
462908--462988	22	3.7	22	77	8	76	77	7	13	1	1.03
463609--463663	22	2.5	22	100	0	110	36	27	12	23	1.91
464523--464627	36	2.9	36	91	2	165	25	23	13	37	1.92
464523--464632	37	3.0	37	90	2	168	27	23	12	36	1.91
464541--465137	102	5.9	102	94	0	1043	29	20	12	37	1.90
464745--464831	37	2.4	37	88	1	122	25	20	13	40	1.89
464847--464934	38	2.4	38	86	3	117	25	20	13	40	1.89
464950--465036	37	2.4	37	86	5	115	25	21	13	39	1.90
464541--465137	205	2.9	204	95	0	1061	29	20	12	37	1.90
464541--465204	307	2.2	305	91	1	1058	29	20	12	36	1.90
465051--465120	36	1.9	36	88	0	104	25	21	12	40	1.89
465051--465137	36	2.4	36	84	0	93	27	21	11	39	1.88
465079--465237	67	2.4	67	87	4	223	32	22	10	34	1.88
465816--466287	109	4.4	109	86	2	605	33	26	19	21	1.97
465816--466445	109	5.9	107	81	7	590	32	25	19	21	1.97
466907--467031	34	3.8	34	73	19	120	42	10	15	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467389--467431	18	2.5	17	85	7	61	25	4	2	67	1.22
478002--478033	15	2.1	15	100	0	64	37	6	31	25	1.81
479297--479357	23	2.7	23	87	2	97	24	31	26	18	1.97
481937--481987	22	2.3	22	93	6	86	17	41	19	21	1.91
483779--483817	21	2.0	20	85	10	53	58	2	15	23	1.49
485908--485958	2	25.5	2	100	0	102	49	0	0	50	1.00
493587--493624	20	2.0	20	85	10	53	44	7	15	31	1.75
497793--497833	16	2.6	16	88	3	57	36	12	21	29	1.90
497910--497975	23	2.9	23	93	0	114	30	22	12	34	1.91
499042--499080	3	13.0	3	84	10	53	38	0	0	61	0.96
499042--499081	15	2.7	15	85	14	64	40	0	0	60	0.97
501105--501160	25	2.2	24	81	9	67	50	0	0	50	1.00
501847--501901	26	2.1	25	83	10	65	32	3	1	61	1.24
506744--506791	25	1.9	25	86	0	69	83	0	12	4	0.79
506744--506791	8	5.9	8	82	4	60	83	0	12	4	0.79
511542--511592	22	2.3	23	80	10	61	37	9	11	41	1.75
512253--513038	46	17.0	45	88	3	953	25	22	19	33	1.97
513273--513313	3	13.0	3	89	5	55	39	0	0	60	0.96
513273--513314	17	2.7	15	86	13	66	40	0	0	59	0.97
514942--515014	34	2.2	35	78	9	80	31	6	5	56	1.49
515055--515116	19	3.0	20	71	15	54	29	8	1	61	1.34
523975--524034	17	3.4	17	69	24	52	18	25	8	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
523997--524298	102	2.9	101	76	11	317	28	17	16	38	1.91
524405--524966	113	5.0	113	97	0	1027	29	18	13	38	1.89
524289--524966	226	3.0	226	92	3	1065	28	19	13	38	1.90
524289--524966	339	2.0	344	90	4	1077	28	19	13	38	1.90
527592--527813	114	1.9	114	90	0	354	30	21	17	31	1.96
530023--530067	22	2.0	22	95	0	81	4	11	13	71	1.29
533673--533729	13	4.6	13	70	18	50	57	8	12	21	1.61
536251--536326	29	2.7	28	71	13	66	67	3	1	27	1.17
540931--541001	35	2.0	35	100	0	142	28	19	39	12	1.88
542551--542600	14	3.4	14	83	5	55	40	0	0	60	0.97
542576--542637	7	9.0	7	79	10	65	32	0	1	66	1.02
542550--542652	9	12.2	8	76	19	54	37	0	0	61	1.03
542590--542664	34	2.2	34	90	0	123	38	0	1	60	1.06
543389--543439	26	1.9	27	84	11	70	52	0	0	47	1.00
545151--545228	31	2.6	29	80	9	95	53	10	5	30	1.56
548312--548362	23	2.2	23	96	0	93	29	13	25	31	1.94
548715--548763	24	2.0	25	84	11	66	44	6	4	44	1.47
552802--553017	105	2.1	104	82	0	252	40	22	13	23	1.90
557764--557984	105	2.1	105	83	2	275	39	23	14	22	1.91
558887--558914	2	14.0	2	100	0	56	50	0	0	50	1.00
559414--559456	22	2.0	22	85	0	59	11	23	37	27	1.89
561980--562328	173	2.0	173	100	0	698	19	24	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565392--565435	19	2.3	19	96	0	79	50	6	36	6	1.56
569497--569542	22	2.1	22	95	0	83	15	34	17	32	1.91
569497--569550	22	2.2	25	75	21	69	14	37	16	31	1.89
569503--569550	22	2.2	22	96	0	87	14	37	16	31	1.89
575260--575305	22	2.1	22	100	0	92	30	8	23	36	1.85
576193--576246	27	2.0	27	100	0	108	22	22	29	25	1.99
578104--578156	23	2.3	22	84	12	70	26	11	20	41	1.86
578119--578164	23	2.0	23	100	0	92	26	13	17	43	1.85
578856--579265	22	18.6	22	87	2	572	48	9	0	41	1.36
579284--579311	10	2.8	10	100	0	56	32	7	28	32	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19