genome.fa.s8750.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008750.1 Hibiscus syriacus cultivar Beakdansim tig00111841_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3719443

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  12  of  18  ( 2144 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2289861--2289953	37	2.5	37	85	0	114	31	12	12	43	1.81
2290696--2291547	106	8.0	106	91	0	1319	23	17	24	34	1.96
2292282--2292342	24	2.5	24	89	0	86	42	3	19	34	1.68
2292536--2292587	22	2.4	21	87	9	77	19	11	28	40	1.86
2293205--2293276	12	5.9	12	75	14	58	0	15	5	79	0.91
2293205--2293276	24	3.1	23	76	11	67	0	15	5	79	0.91
2297580--2297645	24	2.8	24	81	4	71	75	0	7	16	1.02
2297580--2297653	12	5.8	13	71	9	53	75	0	6	17	1.01
2297588--2297645	24	2.5	24	85	2	73	77	0	6	15	0.97
2297604--2297664	4	15.2	4	73	13	54	73	0	4	21	1.01
2297972--2298014	20	2.1	19	83	12	50	58	0	4	37	1.19
2298079--2298111	15	2.1	16	88	5	50	69	6	0	24	1.10
2298475--2298566	37	2.5	37	85	0	112	30	13	14	42	1.83
2299609--2299661	24	2.2	24	96	3	99	32	11	7	49	1.67
2303904--2303937	2	17.0	2	100	0	68	50	0	0	50	1.00
2303957--2304122	85	2.0	85	87	2	244	31	17	21	28	1.96
2304084--2304158	26	3.0	25	83	12	68	34	18	22	24	1.96
2304094--2304158	13	5.0	13	83	7	87	35	16	21	26	1.95
2304094--2304158	26	2.5	26	92	0	103	35	16	21	26	1.95
2308187--2308254	23	3.0	22	78	8	73	16	23	26	33	1.95
2310804--2310872	30	2.2	30	85	15	95	34	5	17	42	1.73
2310813--2310872	30	2.0	30	93	6	104	33	6	16	43	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2310952--2311051	22	4.7	22	72	15	93	24	35	19	22	1.96
2310984--2311051	13	4.9	14	71	18	54	25	33	19	22	1.97
2311072--2311145	20	3.7	20	78	10	87	18	27	24	29	1.98
2311503--2311572	34	2.1	32	86	5	95	31	15	30	22	1.95
2314387--2314455	30	2.2	30	85	15	95	36	5	14	43	1.70
2314396--2314455	29	2.0	31	93	6	106	35	6	15	43	1.72
2314567--2314634	13	4.9	14	75	18	63	23	33	20	22	1.97
2314540--2314634	21	4.6	20	79	11	102	23	34	20	22	1.96
2314655--2314707	20	2.7	20	91	5	81	16	28	22	32	1.96
2316877--2316920	23	1.9	23	85	0	61	18	22	27	31	1.97
2317048--2317096	14	3.3	16	81	16	61	40	0	14	44	1.45
2319227--2319269	17	2.5	17	82	14	61	69	6	0	23	1.12
2319518--2319580	31	2.0	31	96	0	117	39	15	14	30	1.87
2319757--2319809	25	2.1	25	83	13	65	41	9	7	41	1.66
2321799--2321828	16	1.9	15	93	6	51	3	40	0	56	1.16
2321798--2321834	9	4.3	9	83	10	51	2	43	0	54	1.14
2326203--2326245	18	2.4	18	96	3	79	53	9	0	37	1.33
2326929--2326955	6	4.5	6	100	0	54	14	0	66	18	1.25
2327843--2327879	20	2.0	20	84	10	51	43	21	5	29	1.75
2333258--2333314	15	3.9	15	83	2	80	40	5	21	33	1.75
2333252--2333323	30	2.4	29	93	2	126	44	4	20	30	1.71
2333333--2333366	14	2.4	14	90	0	50	38	14	14	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2333611--2333673	23	2.6	24	82	9	67	46	0	1	52	1.10
2333638--2333673	11	2.8	14	76	24	51	44	0	0	55	0.99
2333657--2333830	29	5.9	29	71	17	103	49	1	0	48	1.12
2337956--2338009	20	2.7	20	80	13	65	68	3	1	25	1.16
2338659--2338710	17	3.1	17	77	5	61	32	0	5	61	1.20
2342554--2342846	29	10.2	29	80	5	254	20	23	19	36	1.95
2342554--2342846	57	5.1	57	79	4	241	20	23	19	36	1.95
2342554--2342846	86	3.4	86	76	4	277	20	23	19	36	1.95
2345251--2345303	21	2.5	21	81	0	61	20	24	20	33	1.97
2345293--2345529	20	11.6	20	79	5	181	34	18	20	27	1.96
2345290--2345529	61	3.9	61	76	5	259	34	18	20	27	1.95
2345351--2345426	21	3.7	21	83	3	100	22	21	18	38	1.94
2345278--2345527	41	6.1	40	73	10	184	33	18	20	28	1.96
2346068--2346152	19	4.7	19	74	15	81	44	23	21	10	1.83
2346156--2346255	33	2.8	34	82	10	112	11	22	19	48	1.79
2346165--2346255	20	4.9	20	72	20	81	10	20	19	48	1.79
2347941--2348191	94	2.8	93	85	9	340	22	12	18	46	1.82
2348864--2349170	149	2.1	149	95	1	553	34	21	17	26	1.95
2349966--2350009	22	2.0	22	86	4	63	34	20	0	45	1.51
2350066--2350100	18	1.9	18	88	11	54	22	17	5	54	1.64
2350592--2350752	64	2.5	63	83	5	198	27	21	18	33	1.96
2354096--2354140	23	2.0	23	90	0	72	24	26	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2354108--2354422	149	2.1	149	94	2	544	34	21	17	26	1.96
2355230--2355273	22	2.0	22	86	4	63	34	20	0	45	1.51
2355330--2355364	18	1.9	18	88	11	54	22	17	5	54	1.64
2355859--2356016	64	2.5	63	83	5	192	26	22	17	34	1.95
2356953--2356990	20	1.9	20	100	0	76	50	28	15	5	1.66
2357014--2357103	19	4.9	19	72	15	82	11	20	21	47	1.80
2359081--2359161	19	4.3	19	90	3	103	45	22	17	14	1.84
2359157--2359307	19	8.7	19	65	21	80	11	24	19	43	1.85
2359161--2359287	33	3.8	33	95	0	227	11	24	19	44	1.84
2359182--2359269	14	5.6	14	67	23	50	11	25	20	43	1.85
2359281--2359353	20	3.6	21	70	17	64	23	19	23	34	1.97
2361840--2361891	24	2.2	24	82	0	59	36	17	19	26	1.94
2362740--2362932	20	9.6	20	81	11	209	37	17	19	25	1.93
2362740--2362932	41	4.8	40	80	11	209	37	17	19	25	1.93
2362750--2362986	61	3.9	61	81	8	243	38	17	19	24	1.93
2362750--2362960	41	5.3	39	81	9	178	38	17	18	24	1.92
2363995--2364021	2	13.5	2	100	0	54	48	0	0	51	1.00
2366258--2366287	15	2.0	15	93	0	51	50	0	0	50	1.00
2369451--2369485	17	2.1	17	88	0	52	28	2	8	60	1.41
2370384--2370430	25	1.9	25	95	4	87	57	0	0	42	0.98
2375798--2375837	14	2.9	14	85	3	55	2	12	27	57	1.48
2380886--2380930	23	2.0	23	100	0	90	24	13	26	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2381083--2381107	2	12.5	2	100	0	50	48	0	0	52	1.00
2386241--2386283	19	2.4	18	84	7	52	18	6	27	46	1.75
2386421--2386480	3	20.0	3	100	0	120	33	0	0	66	0.92
2387861--2387934	30	2.5	30	88	4	105	41	6	4	47	1.49
2393780--2393882	24	4.3	24	82	1	118	19	13	15	51	1.76
2393788--2393867	12	6.7	12	70	11	56	21	15	16	47	1.82
2393791--2393882	48	1.9	48	88	0	139	19	14	15	51	1.77
2393995--2394055	30	2.0	30	96	0	113	34	19	21	24	1.96
2398343--2398451	24	4.5	24	80	4	121	18	14	16	50	1.78
2398342--2398437	12	8.0	12	70	9	61	20	15	16	46	1.83
2398360--2398451	48	1.9	48	88	0	139	18	14	16	51	1.77
2402424--2402467	19	2.3	19	84	7	54	61	0	11	27	1.30
2404460--2404501	21	2.0	20	86	4	57	38	14	7	40	1.73
2408087--2408225	74	1.9	75	89	1	217	26	2	11	59	1.43
2408863--2408907	16	2.7	17	86	3	56	22	4	2	71	1.15
2414555--2414600	11	4.4	11	81	10	60	10	0	6	82	0.83
2414563--2414603	19	2.1	20	95	4	75	12	0	4	82	0.81
2416331--2416495	76	2.2	75	86	3	233	30	2	10	55	1.47
2416453--2416515	19	3.2	19	75	4	54	31	0	12	55	1.37
2417143--2417189	20	2.3	20	85	7	60	21	4	0	74	0.99
2418727--2418768	21	2.0	20	86	4	57	38	14	7	40	1.73
2421485--2421525	17	2.4	17	100	0	82	17	17	43	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2429639--2429677	19	2.0	21	90	10	64	28	5	0	66	1.12
2429634--2429677	22	2.0	21	86	4	61	29	6	0	63	1.20
2429886--2429940	17	3.2	17	78	12	51	20	0	7	72	1.07
2430933--2430985	27	2.0	27	84	0	70	13	11	7	67	1.40
2440385--2440478	48	1.9	49	89	2	145	47	13	23	14	1.80
2441256--2441919	105	6.3	105	93	0	1080	32	25	18	23	1.97
2443669--2443694	3	8.7	3	100	0	52	34	0	0	65	0.93
2443957--2443995	19	2.0	21	90	10	64	28	5	0	66	1.12
2443952--2443995	22	2.0	21	86	4	61	29	6	0	63	1.20
2444204--2444257	17	3.2	17	78	14	51	20	0	7	72	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18