genome.fa.s8750.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008750.1 Hibiscus syriacus cultivar Beakdansim tig00111841_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3719443

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  4  of  18  ( 2144 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631779--631826	24	1.9	26	84	16	66	20	6	0	72	1.05
631764--631875	56	2.0	55	81	8	129	24	4	0	70	1.11
631769--631863	51	1.9	48	81	14	113	24	4	1	70	1.11
631976--632010	3	11.7	3	88	11	54	34	0	0	65	0.93
632196--632254	23	2.7	23	82	7	70	13	6	0	79	0.92
632197--632264	22	3.0	23	77	12	77	14	7	0	77	0.96
634849--634904	17	3.4	17	73	9	53	37	1	7	53	1.39
635341--635371	14	2.2	14	94	0	53	32	0	3	64	1.09
637764--637812	16	3.0	17	79	11	66	38	2	4	55	1.31
638632--638669	14	2.6	15	83	8	51	68	2	26	2	1.16
639985--640042	18	3.1	18	80	11	71	29	12	12	46	1.77
640240--640322	22	3.8	22	95	0	139	28	25	21	24	1.99
640286--640358	37	2.0	37	91	2	121	24	28	21	24	1.99
640475--640726	124	2.0	124	100	0	504	31	26	15	26	1.96
644091--644186	4	25.5	4	70	12	60	52	0	0	47	1.00
644091--644186	6	17.0	6	76	12	60	52	0	0	47	1.00
644091--644182	44	2.1	44	91	0	148	52	0	0	47	1.00
644379--644667	141	2.0	143	98	1	564	34	9	10	45	1.70
644718--644760	16	2.5	17	85	7	52	32	6	2	58	1.38
646706--646751	21	2.2	21	88	0	65	26	19	19	34	1.96
646771--646810	20	2.0	20	85	5	53	20	17	27	35	1.95
648711--648783	36	2.0	36	82	10	87	49	4	1	45	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
650928--650965	18	2.0	20	85	10	53	50	0	2	47	1.15
650939--650971	15	2.1	16	88	11	50	54	0	0	45	0.99
651152--651198	15	3.3	14	75	13	51	40	0	2	57	1.11
651292--651344	11	4.7	12	75	25	53	47	0	0	52	1.00
651296--651349	24	2.3	23	84	12	74	48	0	0	51	1.00
651374--651406	17	1.9	17	88	11	50	39	0	3	57	1.14
651497--651533	15	2.6	14	87	8	56	45	0	0	54	1.00
652602--652652	17	2.7	20	76	17	63	78	0	1	19	0.85
652669--652716	21	2.3	21	86	13	64	64	0	4	31	1.12
653531--653555	12	2.1	12	100	0	50	12	8	32	48	1.69
653981--654021	20	2.0	20	86	9	57	48	2	19	29	1.61
656856--657698	251	3.4	249	84	3	1076	26	17	22	34	1.96
658441--658483	8	5.1	8	82	5	50	0	16	2	81	0.79
667157--667197	21	2.0	21	85	0	55	48	26	9	14	1.75
668976--669061	38	2.3	38	85	0	118	48	0	1	50	1.08
668991--669061	32	2.4	32	81	11	89	49	0	1	49	1.09
670445--670489	15	2.9	15	84	15	65	77	2	0	20	0.87
670445--670555	15	7.3	15	71	23	58	71	0	4	23	1.10
670509--670557	21	2.3	20	83	16	64	65	0	6	28	1.16
671714--671759	2	23.0	2	100	0	92	50	0	0	50	1.00
673026--673099	21	3.5	21	82	10	87	33	16	22	27	1.95
673149--673225	36	2.1	36	95	0	136	24	18	32	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681834--681976	70	2.0	70	91	0	232	37	20	9	33	1.84
682004--682180	81	2.2	81	93	3	302	40	9	13	36	1.76
683900--684245	185	1.9	188	88	1	527	39	5	9	45	1.60
685948--686017	34	2.1	32	86	5	95	22	28	15	32	1.95
686482--686541	20	3.0	19	80	9	75	16	28	35	20	1.94
686432--686516	34	2.5	34	86	1	125	20	24	34	21	1.97
688491--688531	3	14.0	3	87	5	57	0	29	2	68	1.03
689522--689591	34	2.1	32	86	5	95	22	28	15	32	1.95
689876--689915	21	1.9	21	94	0	71	27	30	17	25	1.97
690029--690085	15	3.5	15	72	25	53	19	24	36	19	1.94
690028--690112	34	2.5	34	94	1	143	17	25	35	21	1.95
690078--690138	22	2.9	22	80	9	74	16	27	34	21	1.95
690917--690975	30	2.0	30	83	12	77	11	8	1	77	1.05
690981--691018	12	3.4	11	82	17	51	26	0	2	71	1.00
691925--692029	37	2.8	37	85	0	138	29	14	14	41	1.85
692572--693127	105	5.3	105	88	3	746	22	17	26	33	1.96
704322--704426	37	2.8	37	83	0	129	29	15	14	40	1.86
705323--705373	25	2.1	24	81	3	57	39	1	5	52	1.37
707095--707142	21	2.4	20	83	16	64	39	0	0	60	0.97
707226--707263	2	19.0	2	100	0	76	50	0	0	50	1.00
708439--708688	81	3.1	81	92	1	403	30	22	11	36	1.89
715239--715407	81	2.1	81	88	0	248	28	23	10	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724171--724213	20	2.2	20	83	4	52	72	6	4	16	1.24
736582--736747	85	2.0	85	83	4	210	30	18	19	31	1.96
736725--736773	13	3.8	13	83	0	71	34	18	18	28	1.94
736719--736773	26	2.1	26	86	0	74	38	16	18	27	1.92
738885--738962	20	3.9	20	91	3	104	21	25	17	34	1.96
741071--741110	17	2.3	18	80	20	50	57	0	12	30	1.36
741429--741467	18	2.2	17	86	9	51	33	0	5	61	1.18
742050--742101	20	2.6	20	93	0	95	28	13	26	30	1.94
742426--742521	46	2.1	46	96	0	174	38	10	21	29	1.87
748222--748272	3	17.3	3	95	4	95	31	0	0	68	0.90
750213--750268	2	29.0	2	92	7	98	51	0	0	48	1.00
755073--755126	27	2.0	27	100	0	108	29	18	18	33	1.95
762390--762594	113	1.8	113	96	0	383	28	23	16	31	1.96
762534--762628	48	2.0	48	91	0	154	27	22	15	34	1.94
762627--762913	111	2.6	111	90	1	459	29	25	16	29	1.97
767301--767420	42	2.9	42	97	0	222	16	20	18	44	1.87
767610--767670	22	2.8	23	82	7	65	47	0	0	52	1.00
767709--767784	28	2.7	28	76	13	84	42	1	1	55	1.16
767636--767738	54	1.9	52	84	11	138	48	0	0	49	1.14
767950--768019	20	3.5	20	92	0	122	37	14	8	40	1.76
767950--768028	40	2.0	40	87	0	113	36	15	7	40	1.75
768002--768083	15	5.5	15	85	2	112	35	18	7	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
768002--768083	30	2.8	30	92	1	130	35	18	7	39	1.78
768002--768088	45	2.0	44	90	2	138	33	18	6	41	1.77
769177--769223	23	2.0	23	84	15	62	40	4	2	53	1.32
771849--771875	7	3.9	7	100	0	54	11	0	0	88	0.50
772885--772919	17	2.0	18	88	5	54	25	2	0	71	1.00
773779--773818	19	2.1	19	90	0	62	10	20	27	42	1.83
789626--789704	23	3.4	23	73	16	81	16	21	26	35	1.94
789625--789705	24	3.5	24	74	17	80	16	22	25	35	1.94
796526--796686	59	2.7	60	80	10	168	33	21	4	40	1.73
798277--798324	25	1.9	25	87	8	71	29	8	2	60	1.37
798753--798815	23	2.6	24	78	19	60	50	1	0	47	1.10
798787--798833	22	2.1	23	88	4	69	44	2	0	53	1.12
798781--798860	32	2.5	32	80	14	92	47	2	0	50	1.14
798950--799018	19	3.6	18	71	21	52	47	2	1	47	1.25
799013--799057	23	2.0	23	81	0	54	55	2	2	40	1.24
799160--799219	29	2.1	29	84	12	79	48	0	1	50	1.11
803301--803327	4	6.8	4	100	0	54	25	0	0	74	0.83
805161--805187	6	4.5	6	100	0	54	0	0	33	66	0.92
805681--805729	3	16.3	3	100	0	98	34	0	65	0	0.93
812220--812262	21	2.0	21	81	0	50	27	16	37	18	1.92
816681--816955	141	2.0	139	94	2	489	29	16	17	37	1.91
818355--818409	28	2.0	28	100	0	110	32	10	23	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
818858--818970	21	5.4	21	86	0	145	23	16	27	32	1.96
822346--822371	9	2.9	9	100	0	52	57	23	0	19	1.40
826683--826718	18	2.0	18	100	0	72	33	22	0	44	1.53
836489--836631	64	2.2	64	84	8	175	28	16	24	30	1.96
837304--837352	24	2.1	23	84	3	62	53	18	8	20	1.70
849288--849328	21	2.0	21	90	0	64	21	24	24	29	1.99
852583--852656	20	3.7	20	94	0	121	39	8	17	35	1.79
852583--852659	40	1.9	40	94	0	136	40	7	18	33	1.79
852761--852814	25	2.2	25	89	0	81	42	20	12	24	1.87
854860--854937	13	6.0	13	87	0	93	28	23	16	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18