genome.fa.s8750.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008750.1 Hibiscus syriacus cultivar Beakdansim tig00111841_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3719443

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  3  of  18  ( 2144 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378734--378821	29	3.1	29	90	1	133	31	9	11	47	1.71
396178--396550	71	5.2	71	73	13	268	35	9	22	31	1.86
396069--396305	127	1.9	125	87	6	347	35	10	22	32	1.87
396738--396861	51	2.4	52	78	12	134	54	7	16	22	1.66
401182--401225	21	2.0	22	82	4	54	70	6	4	18	1.27
403698--403722	13	1.9	13	100	0	50	80	4	8	8	1.03
409796--409879	22	3.8	21	83	10	96	52	2	2	42	1.27
410131--410172	18	2.3	19	80	19	54	57	0	2	40	1.12
411313--411367	26	2.1	26	96	0	101	38	3	16	41	1.66
411542--411609	31	2.2	31	89	0	100	20	29	14	35	1.93
422085--422155	25	2.8	25	76	8	72	43	2	12	40	1.57
422346--422385	16	2.5	16	84	12	55	52	0	0	47	1.00
423392--423429	16	2.3	17	82	17	53	47	0	7	44	1.32
424374--424437	29	2.2	29	83	8	78	75	1	4	18	1.06
424478--424520	2	21.5	2	100	0	86	51	0	0	48	1.00
426554--427122	106	5.4	106	93	0	951	21	21	25	32	1.98
438662--438705	20	2.3	18	88	11	61	61	2	6	29	1.34
440982--441025	22	2.0	22	90	0	70	40	9	22	27	1.84
452635--452664	14	2.1	14	93	0	51	60	23	13	3	1.48
452949--453014	24	2.7	24	78	4	78	53	16	12	18	1.73
453505--453537	2	16.5	2	100	0	66	48	0	0	51	1.00
456257--456290	14	2.5	13	86	13	50	23	26	14	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459945--460226	141	2.0	141	94	0	492	39	9	18	31	1.84
460929--460959	16	1.9	16	93	0	53	38	16	29	16	1.90
461000--461037	20	1.9	20	88	0	58	18	21	28	31	1.97
468546--468614	20	3.5	20	97	0	129	26	24	23	26	2.00
468532--468619	40	2.2	40	85	2	124	25	22	25	27	2.00
476276--476323	19	2.5	19	83	6	62	62	0	6	31	1.20
477840--477885	17	2.8	17	80	16	60	63	0	0	36	0.95
484736--484800	29	2.3	29	81	7	80	43	3	1	52	1.26
485716--485785	35	2.0	35	94	0	122	37	25	14	22	1.92
496580--497083	197	2.6	193	81	5	550	37	4	8	48	1.56
499915--500234	179	1.8	175	83	6	430	41	12	8	37	1.74
502021--502066	17	2.6	18	83	13	60	45	0	4	50	1.21
503083--503112	3	10.0	3	92	0	51	0	63	0	36	0.95
505922--505966	22	2.0	22	100	0	90	33	26	8	31	1.87
506160--506190	15	2.1	15	100	0	62	32	12	29	25	1.93
507055--507092	20	1.9	20	88	0	58	44	0	2	52	1.14
507319--507348	2	15.0	2	100	0	60	50	0	0	50	1.00
513946--513985	21	1.9	21	90	10	64	52	0	10	37	1.35
517791--517853	23	3.0	21	79	6	56	23	31	25	19	1.98
517834--517875	19	2.3	19	87	4	59	21	30	33	14	1.93
530627--530658	16	2.0	16	100	0	64	31	0	12	56	1.37
532175--532234	26	2.3	26	83	8	70	26	10	15	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
535311--535347	19	2.1	18	85	14	51	43	21	10	24	1.84
542978--543068	23	4.0	23	84	1	121	18	24	24	32	1.97
548128--548405	103	2.7	102	80	2	297	35	12	19	33	1.89
555036--555150	29	3.9	29	81	2	131	20	42	25	12	1.86
555033--555150	58	2.0	60	88	3	177	19	41	26	12	1.87
555100--555253	30	5.1	30	87	2	211	24	46	18	11	1.81
555901--555944	21	2.1	21	91	0	70	29	0	15	54	1.42
555921--555974	28	1.9	28	96	0	99	29	0	12	57	1.36
559111--559271	35	5.2	34	60	27	88	40	0	13	45	1.44
559155--559242	11	7.6	11	71	17	54	39	0	14	45	1.45
559155--559243	21	4.4	20	64	17	58	40	0	14	44	1.45
559324--559428	25	4.0	25	70	13	84	36	0	14	48	1.50
559380--559427	14	3.6	14	81	16	66	33	0	16	50	1.46
559042--559412	60	6.2	60	88	6	560	39	0	13	46	1.48
561732--561806	30	2.5	31	77	18	86	49	10	1	38	1.46
561984--562023	21	1.9	21	100	0	80	57	15	0	27	1.38
562051--562105	18	3.4	18	65	31	52	52	9	0	38	1.33
562125--562196	38	2.0	37	86	13	105	48	9	0	41	1.36
562221--562285	28	2.3	29	82	10	82	46	15	1	36	1.55
562575--562610	11	3.2	11	84	7	54	36	19	22	22	1.95
562801--562866	33	2.0	33	90	0	105	15	19	36	28	1.92
562855--562880	10	2.6	10	100	0	52	11	19	50	19	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
562900--562986	29	3.0	29	84	0	120	14	29	39	16	1.88
563334--563370	19	1.9	19	94	0	65	35	10	16	37	1.83
571309--571382	31	2.4	31	88	0	103	21	10	13	54	1.69
571985--572022	19	2.0	20	94	5	69	5	26	0	68	1.11
573060--573126	22	3.0	22	100	0	134	26	26	26	19	1.99
573346--573404	30	1.9	31	86	3	84	33	22	6	37	1.80
573419--573490	29	2.5	28	88	4	99	37	13	11	37	1.81
573794--573966	67	2.6	67	87	3	224	18	28	26	26	1.98
573923--573965	22	2.0	22	85	0	59	16	27	27	27	1.97
579795--579861	22	3.0	22	100	0	134	26	26	26	19	1.99
580081--580139	30	1.9	31	86	3	84	33	22	6	37	1.80
580154--580225	29	2.5	28	84	4	90	36	13	12	37	1.83
580523--580694	66	2.6	66	85	5	204	18	27	26	26	1.98
580652--580694	21	2.0	21	86	0	59	16	25	27	30	1.97
587474--587507	7	4.9	7	100	0	68	29	0	26	44	1.55
587468--587507	21	2.0	21	85	5	55	32	0	27	40	1.57
589010--589083	31	2.4	31	90	4	114	56	13	10	18	1.66
589220--589284	31	2.1	31	91	5	105	52	12	12	23	1.72
593792--593840	18	2.7	18	96	0	89	38	8	10	42	1.68
593828--594163	144	2.3	144	78	6	367	21	18	21	38	1.94
594810--595152	169	2.0	169	100	0	686	30	27	19	21	1.98
595813--595847	13	2.6	14	86	9	54	25	0	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
596054--596119	24	2.7	25	86	6	91	43	3	0	53	1.16
598094--598142	20	2.5	20	82	0	71	48	0	0	51	1.00
608964--609017	27	2.0	27	89	7	83	50	3	5	40	1.44
609591--609629	20	2.0	20	95	5	71	33	0	0	66	0.92
609656--609694	17	2.2	18	86	4	53	38	0	7	53	1.30
609645--609698	27	2.0	27	100	0	108	40	0	7	51	1.30
610456--610555	23	4.3	23	78	14	89	40	23	8	29	1.83
610459--610551	11	8.3	11	72	17	59	40	23	6	29	1.79
611034--611122	43	2.1	43	86	0	124	32	24	17	24	1.97
611044--611128	43	2.0	43	88	0	125	32	23	17	25	1.97
611450--611576	43	3.0	43	91	2	202	35	19	4	40	1.73
615770--616196	212	2.0	213	99	0	838	36	19	11	31	1.88
619953--619993	17	2.4	17	95	0	73	34	19	19	26	1.96
621282--621352	31	2.3	31	100	0	142	11	2	26	59	1.46
621296--621350	18	3.3	18	66	23	57	12	1	27	58	1.45
622935--622999	32	2.1	31	88	2	94	41	15	6	36	1.72
623048--623078	16	1.9	16	93	0	53	22	12	16	48	1.80
624005--624222	9	24.4	9	66	17	75	70	1	5	22	1.17
624086--624159	4	17.8	4	76	15	62	74	1	1	22	0.97
624085--624191	5	21.8	5	71	19	59	73	0	3	21	1.04
624069--624192	25	5.0	25	73	17	89	73	1	4	20	1.08
624131--624199	25	2.7	25	80	10	86	75	0	5	18	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624215--624283	24	2.9	23	75	14	68	71	1	8	18	1.20
624239--624298	32	1.9	31	89	3	93	71	3	6	18	1.22
624251--624303	16	3.3	16	74	10	54	67	3	5	22	1.28
624421--624467	22	2.1	22	100	0	94	51	23	12	12	1.74
629529--629644	36	3.2	36	90	3	180	31	18	10	38	1.85
629657--630023	36	10.5	36	71	14	248	27	18	12	41	1.87
629847--630082	102	2.3	101	84	3	296	27	19	11	41	1.86
629530--630004	138	3.4	139	92	0	742	28	18	12	41	1.86
630067--630097	15	2.1	15	93	0	53	25	12	19	41	1.87
631265--631305	21	2.0	21	85	9	57	36	2	14	46	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18