genome.fa.s8750.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008750.1 Hibiscus syriacus cultivar Beakdansim tig00111841_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3719443

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  5  of  18  ( 2144 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
855094--855150	2	28.5	2	100	0	114	49	0	0	50	1.00
855201--855240	2	20.0	2	100	0	80	50	0	0	50	1.00
857614--857681	28	2.4	28	100	0	136	38	10	7	44	1.67
859486--859564	23	3.4	23	79	6	88	36	25	21	16	1.94
862263--862338	31	2.5	31	79	12	84	31	18	9	40	1.82
864969--865029	23	2.7	23	84	0	86	32	26	24	16	1.96
866881--866949	31	2.3	31	85	9	90	34	23	5	36	1.79
869973--870080	25	4.3	26	81	6	125	37	16	20	25	1.93
869973--870079	50	2.1	50	85	0	142	37	15	20	26	1.93
872405--872429	12	2.1	12	100	0	50	44	16	16	24	1.86
880033--880069	18	2.1	18	100	0	74	43	16	16	24	1.87
881644--881724	10	8.1	10	73	20	71	60	19	9	9	1.56
881644--881717	37	2.0	36	89	7	114	60	18	9	10	1.56
881671--881724	23	2.3	23	93	0	90	61	18	9	11	1.55
881654--881714	13	4.8	13	70	22	58	60	19	9	9	1.56
882006--882041	14	2.6	14	90	0	54	63	8	5	22	1.43
883434--883536	33	2.9	37	83	14	153	13	7	35	42	1.73
884103--884149	18	2.7	18	90	3	69	29	25	8	36	1.86
884521--884561	2	20.5	2	100	0	82	51	0	0	48	1.00
884655--884692	16	2.4	16	90	0	58	34	5	31	28	1.80
885287--885498	28	7.2	28	75	11	185	45	29	7	17	1.76
885337--885519	89	2.0	89	86	5	253	48	26	7	18	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
885482--885561	32	2.5	32	85	2	117	43	25	10	21	1.83
886020--886072	21	2.5	21	96	0	97	28	28	24	18	1.98
886081--886299	21	10.6	21	74	11	193	20	19	25	34	1.96
886106--886301	42	4.8	40	93	5	347	20	19	25	35	1.96
886106--886301	82	2.4	82	99	0	383	20	19	25	35	1.96
887039--887230	42	4.7	42	92	2	302	35	22	20	21	1.96
887032--887230	21	9.7	19	76	13	182	35	22	20	22	1.96
887759--887802	23	1.9	23	90	0	70	43	4	27	25	1.74
888657--888746	19	4.8	19	74	8	85	40	30	3	26	1.72
893118--893177	26	2.3	26	100	0	120	25	18	40	16	1.91
893563--893609	21	2.2	21	96	0	85	21	10	17	51	1.75
897182--897359	87	2.0	87	94	0	311	34	12	18	34	1.89
897322--897386	20	3.2	20	63	16	53	40	10	16	32	1.84
911433--911466	5	6.8	5	89	0	50	2	41	35	20	1.68
915759--915913	78	2.0	77	98	1	301	40	15	16	27	1.89
917040--917101	27	2.2	29	82	8	83	25	3	27	43	1.70
917394--917454	32	1.9	32	89	0	95	36	6	26	31	1.82
918855--918885	2	16.0	2	93	6	55	51	0	0	48	1.00
919277--919418	48	3.0	48	97	0	266	30	16	26	26	1.96
919293--919407	16	7.2	16	70	14	94	32	17	26	24	1.97
923344--924365	346	3.0	342	86	3	1316	38	9	19	33	1.83
929731--929795	6	10.8	6	79	0	67	21	10	12	55	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
929731--929793	18	3.5	18	93	0	99	22	9	11	57	1.62
929742--929795	24	2.2	24	96	0	99	20	11	12	55	1.67
931362--931419	2	29.0	2	100	0	116	50	0	0	50	1.00
934463--934505	22	1.9	23	85	4	61	55	4	2	37	1.33
937538--937609	36	2.0	37	83	8	94	36	0	1	62	1.04
940659--940696	20	1.9	20	89	10	60	39	2	28	28	1.70
945282--945319	20	1.9	20	89	10	60	39	2	28	28	1.70
946672--946744	37	1.9	37	83	8	94	53	2	0	43	1.15
947037--947100	30	2.2	30	88	2	94	31	28	25	15	1.96
948015--948054	15	2.6	16	88	7	57	30	0	0	70	0.88
951389--951608	44	4.9	44	88	8	309	65	6	5	22	1.35
951847--951928	21	3.9	21	74	6	76	28	13	32	25	1.93
952473--952534	2	31.0	2	100	0	124	50	0	0	50	1.00
953981--954036	29	1.9	29	85	7	78	39	3	26	30	1.73
954868--954895	14	2.0	14	100	0	56	42	28	21	7	1.79
956679--956887	64	3.3	64	81	4	208	33	20	18	27	1.96
957195--957230	12	3.0	12	91	0	63	33	5	25	36	1.79
957195--957263	24	2.8	26	83	12	85	37	5	24	31	1.79
957375--957407	15	2.2	15	100	0	66	15	18	33	33	1.92
962726--962971	124	2.0	122	95	3	440	34	14	23	26	1.94
963470--963690	64	3.5	64	82	4	234	33	19	19	27	1.96
963998--964031	12	2.8	12	86	0	50	35	5	20	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
964131--964162	14	2.2	15	94	5	57	15	18	34	31	1.93
967237--967286	3	17.0	3	84	12	68	34	0	0	66	0.92
967230--967286	30	1.9	30	85	0	78	31	1	1	64	1.13
967241--967279	19	2.1	18	95	4	69	30	0	0	69	0.89
967323--967354	11	2.9	11	100	0	64	37	43	18	0	1.51
970768--970860	31	3.0	31	98	1	177	15	13	9	61	1.57
970872--970897	5	5.2	5	100	0	52	19	19	19	42	1.90
972246--972303	26	2.2	27	81	12	75	22	25	6	44	1.77
972216--972309	46	2.1	45	87	2	134	27	23	9	39	1.86
972880--972940	12	5.1	12	77	0	50	67	14	13	4	1.39
972912--972945	12	2.8	12	90	0	59	73	11	8	5	1.24
974129--974203	12	5.6	12	70	22	51	48	26	0	25	1.52
974128--974203	16	5.2	16	75	23	87	48	26	0	25	1.51
974128--974203	28	2.7	28	95	0	134	48	26	0	25	1.51
974568--974666	36	2.8	36	93	0	171	35	15	11	38	1.83
974789--975017	101	2.3	98	81	10	250	31	19	12	36	1.89
974990--975087	36	2.8	34	78	9	101	34	19	13	32	1.90
975334--975427	29	3.3	29	88	4	140	28	9	13	47	1.74
975591--975812	120	1.9	118	80	9	263	31	13	11	43	1.79
975817--975896	40	2.0	40	85	4	108	31	20	12	36	1.89
975939--975999	31	2.0	30	81	12	70	34	14	9	40	1.79
975992--976035	15	2.9	15	93	0	70	31	20	4	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
976301--976380	35	2.2	37	82	8	94	41	20	8	30	1.82
976646--976934	46	6.7	44	74	11	204	25	30	20	23	1.98
976659--976948	41	6.7	45	73	15	198	25	31	19	24	1.98
976646--977035	130	3.0	130	92	4	606	26	30	19	24	1.98
977236--977282	3	16.0	3	82	12	62	34	0	0	65	0.93
977229--977282	27	2.0	27	85	0	72	31	1	1	64	1.14
977319--977350	11	2.9	11	100	0	64	37	43	18	0	1.51
980534--980695	85	1.9	85	88	2	245	30	17	20	31	1.96
980670--980734	13	5.0	13	90	0	103	32	20	24	23	1.98
981757--981788	2	16.0	2	100	0	64	50	0	0	50	1.00
984774--984820	22	2.1	22	84	11	60	27	10	21	40	1.86
985294--985326	13	2.5	13	95	0	57	12	30	21	36	1.90
990926--990961	2	18.0	2	100	0	72	50	0	0	50	1.00
991128--991167	17	2.4	17	87	8	55	57	0	7	35	1.27
991529--991569	16	2.6	16	92	0	73	31	2	4	60	1.30
991547--991598	22	2.4	22	83	3	61	38	7	1	51	1.42
991568--991670	37	2.5	39	81	15	104	41	8	2	46	1.50
991615--991721	18	6.9	15	69	25	71	42	3	3	49	1.38
991504--991686	45	4.2	44	75	15	146	39	6	3	50	1.45
991615--991703	2	46.0	2	72	22	66	44	3	3	48	1.36
999589--999644	5	11.8	5	77	11	64	21	51	21	5	1.67
999603--999643	14	2.9	14	100	0	82	21	51	21	4	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
999588--999624	9	4.0	9	86	6	56	21	48	21	8	1.76
999589--999629	19	2.2	19	100	0	82	21	51	21	4	1.67
1001220--1001258	2	20.5	2	89	10	64	48	0	0	51	1.00
1008546--1008618	23	3.2	22	83	11	76	58	10	16	13	1.62
1008566--1008618	23	2.2	24	86	3	81	60	11	15	13	1.59
1010277--1010307	16	1.9	16	100	0	62	58	22	12	6	1.58
1010566--1010609	11	3.9	11	76	5	52	27	22	22	27	1.99
1013518--1013549	16	1.9	17	93	6	57	9	34	0	56	1.32
1014378--1014428	20	2.5	20	93	0	84	39	15	19	25	1.91
1017168--1017261	21	4.4	21	72	19	86	21	17	27	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18