genome.fa.s8750.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008750.1 Hibiscus syriacus cultivar Beakdansim tig00111841_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3719443

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  2  of  18  ( 2144 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251503--251780	82	3.4	80	75	6	227	29	16	18	35	1.93
253487--253529	22	2.0	20	86	8	59	46	32	13	6	1.71
253976--254019	21	2.1	21	86	0	61	27	0	22	50	1.50
255877--255916	2	20.0	2	94	0	71	50	2	0	47	1.14
257862--257917	14	4.3	14	80	17	75	8	14	25	51	1.70
257863--257937	24	3.1	24	88	3	107	12	12	21	54	1.69
258956--259022	16	4.3	16	92	3	102	10	10	19	59	1.58
258954--259014	32	1.9	32	96	0	113	8	13	22	55	1.64
259084--259116	16	2.1	16	100	0	66	6	12	24	57	1.57
260331--260361	2	15.5	2	100	0	62	51	0	0	48	1.00
261793--261855	22	2.8	22	83	13	67	50	14	0	34	1.43
262800--262826	14	1.9	14	100	0	54	81	0	18	0	0.69
263234--263285	20	2.6	20	81	0	59	40	21	15	23	1.91
263451--263501	22	2.3	22	96	0	93	21	43	13	21	1.87
265411--265451	21	2.0	21	85	0	55	17	14	36	31	1.90
265477--265569	42	2.2	43	76	5	109	23	10	32	33	1.89
265680--265725	4	11.5	4	80	0	56	26	2	4	67	1.21
265872--266012	21	6.8	21	80	7	162	20	38	19	21	1.94
270021--270074	24	2.2	24	93	0	90	40	20	18	20	1.91
270021--270088	24	2.8	24	84	0	64	38	20	17	23	1.93
270200--270233	12	2.8	12	90	0	50	14	0	29	55	1.40
270830--270869	16	2.5	16	83	0	53	67	0	5	27	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271028--271123	40	2.4	40	80	3	113	35	13	20	30	1.91
271050--271156	20	5.3	20	70	12	67	34	14	22	28	1.93
271082--271180	20	4.9	20	75	9	76	29	12	26	32	1.92
274647--274772	47	2.8	45	85	5	164	39	7	22	30	1.82
275152--275211	30	2.0	30	93	0	102	21	15	28	35	1.93
278375--278429	25	2.2	25	80	0	65	41	20	16	21	1.90
282285--282310	12	2.2	12	100	0	52	23	7	0	69	1.14
285112--285168	20	2.8	21	81	2	71	22	19	14	43	1.86
285920--285957	19	2.0	19	100	0	76	36	5	21	36	1.76
289429--289486	24	2.4	24	82	2	71	25	24	22	27	2.00
291190--291238	14	3.4	14	81	13	64	44	10	2	42	1.49
291577--292096	259	2.0	259	96	0	950	35	13	13	36	1.84
293462--293518	21	2.7	21	83	0	78	29	22	19	28	1.98
293508--293560	21	2.5	21	90	0	88	22	24	22	30	1.99
294238--294361	21	5.9	21	96	0	221	29	22	27	20	1.99
294355--294429	21	3.6	21	79	0	87	33	20	22	24	1.97
300756--300903	20	7.3	20	89	0	215	43	25	12	18	1.85
300731--300903	60	2.9	60	88	2	213	45	23	10	20	1.83
300883--300980	19	5.1	19	85	4	126	34	21	11	32	1.89
300758--300903	60	2.4	60	93	1	238	44	24	12	18	1.84
300870--300980	39	2.8	38	82	9	134	35	21	10	32	1.88
300715--300981	20	13.4	20	80	9	192	40	23	11	24	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304227--304262	18	2.0	18	94	0	63	55	25	2	16	1.55
304462--304510	20	2.5	20	86	0	71	44	22	16	16	1.86
304529--304570	20	2.1	20	90	0	66	26	16	16	40	1.90
306145--306220	21	3.7	20	76	13	82	21	21	35	22	1.96
306145--306241	42	2.3	42	79	10	117	22	19	34	23	1.97
306388--306426	20	2.0	20	89	0	60	61	5	5	28	1.39
308323--308361	20	2.0	20	94	0	69	48	23	17	10	1.78
308369--308419	20	2.5	20	90	0	75	11	17	21	49	1.79
308382--308430	20	2.5	19	83	9	62	12	14	18	55	1.69
308739--308782	22	2.0	22	90	0	70	20	15	43	20	1.88
308944--309069	20	6.3	20	91	0	198	17	11	23	47	1.79
308944--309094	60	2.5	60	87	4	171	19	11	22	46	1.82
310137--310194	21	2.7	21	81	2	62	36	22	13	27	1.92
316135--316286	65	2.4	65	85	5	193	28	17	22	31	1.97
316172--316337	65	2.6	63	78	11	167	25	18	24	31	1.97
316451--316636	92	2.1	89	95	4	338	43	9	10	37	1.70
317466--317509	21	2.1	21	86	0	61	34	15	40	9	1.79
318868--318948	23	3.7	23	80	8	105	23	23	25	27	2.00
321934--322003	24	3.2	24	62	26	64	44	15	7	32	1.74
324728--324907	65	2.8	63	80	9	168	27	19	23	28	1.98
324748--324957	65	3.3	63	78	12	187	27	19	23	30	1.98
326166--326241	19	3.7	19	72	14	53	55	2	10	31	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327986--328035	20	2.5	20	77	6	57	42	2	12	44	1.53
331361--331416	21	2.7	21	97	0	103	28	17	39	14	1.89
331420--331464	20	2.3	19	88	3	63	31	31	22	15	1.95
338657--338714	9	6.1	9	84	7	71	36	27	20	15	1.93
338664--338721	9	5.8	11	78	15	56	36	24	20	18	1.95
338664--338721	30	1.9	30	96	0	107	36	24	20	18	1.95
338657--338721	19	3.4	19	79	10	69	33	26	21	18	1.96
344010--344142	60	2.2	60	77	10	137	36	11	16	36	1.85
346766--346824	27	2.2	26	80	14	66	57	1	0	40	1.09
346992--347054	28	2.2	28	83	10	76	46	1	4	47	1.33
347890--347916	2	13.5	2	100	0	54	48	0	0	51	1.00
348029--348078	26	1.9	26	84	8	66	40	4	18	38	1.69
350586--350612	2	13.5	2	100	0	54	51	0	0	48	1.00
353657--354533	102	8.6	100	70	9	436	36	11	13	38	1.81
353657--354540	406	2.2	403	80	5	1025	36	11	13	38	1.81
353657--354585	203	4.6	200	77	7	881	36	11	13	38	1.81
355079--355587	205	2.5	208	83	2	618	35	11	15	38	1.83
355079--355621	101	5.3	100	73	8	414	34	11	15	38	1.83
355650--355692	21	2.0	21	86	9	59	32	0	13	53	1.41
356705--356916	99	2.2	99	80	2	221	33	14	15	37	1.88
360208--360860	186	3.5	185	81	8	717	32	16	8	41	1.79
362263--362296	12	2.8	12	100	0	68	5	26	26	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362351--362402	21	2.5	21	81	3	61	38	19	25	17	1.93
362391--362504	20	5.7	20	83	6	113	31	25	18	24	1.97
362388--362504	61	1.9	61	85	0	162	33	24	17	23	1.97
363057--363099	18	2.4	19	84	11	63	46	27	16	9	1.77
363095--363240	19	8.1	19	72	17	114	12	24	20	42	1.86
363128--363215	33	2.6	33	96	1	158	11	27	22	38	1.88
365325--365501	42	4.2	42	80	2	194	23	37	15	23	1.93
365360--365474	21	5.5	21	66	15	58	21	37	17	23	1.94
365465--365531	21	3.2	21	66	6	55	23	35	20	19	1.95
365326--365501	84	2.1	84	95	0	316	23	36	15	23	1.94
365359--365531	42	4.1	41	76	8	161	23	36	18	21	1.95
365326--365531	84	2.5	84	89	1	288	23	35	16	23	1.95
366889--366924	14	2.6	14	95	0	63	30	0	25	44	1.54
367049--367105	14	3.7	14	72	20	51	45	22	22	8	1.80
367031--367111	33	2.5	33	93	0	135	46	20	20	11	1.81
367119--367279	33	4.9	31	84	6	187	17	21	19	42	1.90
367113--367279	66	2.5	64	83	7	210	18	20	18	41	1.90
367221--367279	19	3.4	19	68	22	56	15	22	16	45	1.84
369758--369811	24	2.2	24	90	0	81	40	20	16	22	1.91
370598--370649	21	2.5	20	81	3	59	40	15	23	21	1.91
370638--370716	20	3.9	20	75	9	61	36	22	17	22	1.95
371033--371100	19	3.8	19	85	12	92	13	20	17	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373143--373206	20	3.2	20	77	2	67	39	21	23	15	1.92
373195--373285	14	5.9	14	73	20	74	49	21	17	10	1.77
373179--373290	33	3.4	33	95	1	190	48	20	18	12	1.80
373179--373301	65	1.9	66	88	5	187	47	21	17	12	1.80
373297--373378	18	4.6	19	79	14	104	13	20	20	45	1.85
373297--373417	19	6.6	19	74	15	76	14	21	22	42	1.88
375263--375326	20	3.2	20	84	0	74	43	20	18	17	1.88
375570--375635	22	3.0	22	97	0	123	18	10	45	25	1.81
375823--375917	20	4.7	20	79	7	93	23	18	25	32	1.97
375844--375938	41	2.3	41	81	3	111	20	21	23	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18