genome.fa.s8755.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008755.1 Hibiscus syriacus cultivar Beakdansim tig00111847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3030620

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1657 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2856306--2856381	21	3.7	21	78	5	75	42	31	0	26	1.56
2856306--2856385	14	5.9	14	72	11	58	42	31	0	26	1.56
2856309--2856391	20	4.1	19	78	7	67	43	31	0	25	1.55
2856886--2856931	13	3.5	13	80	14	58	56	0	2	41	1.11
2857065--2857114	2	25.5	2	95	4	93	50	0	0	50	1.00
2858588--2858627	22	1.9	21	90	10	64	12	22	42	22	1.87
2859688--2859737	18	2.7	19	84	6	50	4	26	22	48	1.68
2861283--2861364	22	3.8	21	77	7	83	17	25	31	25	1.97
2861283--2861364	23	3.7	22	83	4	103	17	25	31	25	1.97
2867824--2867898	25	3.1	23	81	11	78	74	2	9	13	1.16
2868123--2868178	22	2.4	24	79	8	71	66	0	3	30	1.09
2868126--2868175	22	2.3	22	85	0	73	66	0	4	30	1.10
2870184--2870310	43	3.0	43	80	0	146	24	13	28	33	1.93
2871245--2871287	6	7.0	6	85	15	61	0	18	0	81	0.69
2880170--2880240	26	2.8	25	77	6	63	76	4	9	9	1.15
2880441--2880472	13	2.6	12	90	9	55	75	0	15	9	1.05
2880466--2880514	25	2.0	25	87	0	71	61	0	4	34	1.15
2880466--2880506	21	2.0	21	95	0	73	60	0	2	36	1.10
2884915--2884939	2	12.5	2	100	0	50	52	0	0	48	1.00
2886561--2887270	179	3.9	182	78	7	646	38	11	17	32	1.85
2886561--2887242	362	1.9	359	80	7	808	38	11	17	32	1.85
2887497--2887631	72	1.9	72	81	10	168	45	6	12	34	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2889029--2889556	267	2.0	267	96	3	992	36	21	13	27	1.91
2893708--2893792	21	4.1	21	86	1	109	30	16	24	28	1.96
2898665--2898745	42	1.9	42	82	0	99	29	13	22	34	1.92
2898675--2898745	21	3.4	21	76	0	61	33	11	22	32	1.90
2899487--2899522	16	2.2	17	90	5	56	36	2	19	41	1.66
2904207--2904639	219	2.0	218	95	4	793	37	9	14	38	1.79
2908303--2908354	20	2.6	20	87	0	77	38	15	23	23	1.92
2923209--2923378	30	5.7	30	92	0	259	31	14	15	38	1.88
2926259--2926308	23	2.1	24	88	3	75	44	20	16	20	1.87
2927192--2927267	25	3.0	25	66	22	68	43	3	9	43	1.55
2927188--2927300	51	2.2	50	90	1	181	41	4	10	43	1.59
2932328--2932412	41	2.0	42	97	2	163	18	23	22	35	1.96
2932679--2932720	16	2.7	16	77	3	50	19	11	4	64	1.44
2933450--2933709	100	2.6	100	82	8	307	33	16	16	33	1.92
2935129--2935541	124	3.3	123	83	3	517	30	22	17	28	1.97
2935529--2935962	84	5.2	84	83	4	497	30	25	19	24	1.98
2935529--2935962	165	2.6	165	83	4	518	30	25	19	24	1.98
2936310--2936555	36	7.0	35	74	15	152	42	3	8	46	1.49
2936316--2936454	74	1.9	72	85	5	190	40	2	10	46	1.52
2936420--2936480	27	2.4	25	86	10	95	45	0	6	47	1.28
2936390--2936578	65	2.8	65	81	11	184	43	2	6	47	1.44
2936457--2936686	37	6.5	36	77	10	233	44	2	6	47	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2936457--2936686	68	3.3	68	79	11	250	44	2	6	47	1.40
2936459--2936676	33	6.3	33	73	20	137	44	2	5	46	1.40
2936668--2936718	23	2.3	24	83	12	65	33	0	3	62	1.13
2936684--2936723	16	2.5	15	84	15	53	27	0	2	70	1.01
2936690--2936739	22	2.2	22	82	10	57	22	2	4	72	1.12
2937842--2937871	10	3.0	10	100	0	60	20	10	10	60	1.57
2938009--2938164	21	7.8	20	66	20	67	17	5	1	74	1.11
2938017--2938167	8	16.9	9	71	20	88	18	5	1	74	1.07
2938095--2938163	4	16.0	4	75	19	52	23	2	0	73	0.96
2938117--2938156	14	2.8	14	88	3	53	22	2	0	75	0.93
2938016--2938157	5	28.8	5	68	18	77	19	5	1	73	1.10
2938755--2938801	19	2.6	17	78	18	51	31	17	25	25	1.97
2938845--2938918	22	3.5	22	88	3	107	31	13	27	28	1.94
2939251--2939647	59	6.8	59	91	2	606	35	11	19	34	1.88
2939251--2939647	175	2.2	176	90	3	611	35	11	19	34	1.88
2944974--2945027	22	2.6	21	80	8	65	29	14	27	27	1.95
2945071--2945122	22	2.5	22	90	6	81	28	15	28	26	1.96
2944898--2945124	95	2.4	95	85	2	296	30	14	25	28	1.95
2945456--2945965	59	8.8	59	87	6	715	33	12	19	34	1.89
2945831--2945959	60	2.2	59	90	4	197	34	10	17	37	1.84
2945724--2945936	108	2.0	107	85	4	286	33	11	20	34	1.88
2959703--2959823	60	2.0	60	90	0	188	16	29	10	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2962997--2963075	15	5.1	15	76	8	77	7	13	53	25	1.66
2963000--2963093	21	4.2	21	78	15	107	6	12	55	25	1.61
2962997--2963092	48	2.0	48	95	0	174	7	13	54	25	1.65
2968709--2968750	9	4.7	9	81	18	52	42	0	21	35	1.53
2975213--2975275	19	3.3	19	78	8	65	53	12	19	14	1.72
2975206--2975293	38	2.3	38	86	0	113	51	14	19	14	1.77
2979510--2979877	185	2.0	186	94	1	641	35	14	18	31	1.91
2983693--2983743	21	2.5	20	78	9	59	43	7	21	27	1.80
2987567--2987615	19	2.5	20	87	9	75	48	14	16	20	1.80
2987663--2987702	21	1.9	21	84	0	53	25	22	25	27	2.00
2988375--2988512	31	4.4	31	72	7	109	32	18	18	31	1.94
2988420--2988516	32	3.1	32	76	8	126	29	19	18	31	1.96
2988381--2988514	63	2.1	63	93	1	225	31	17	17	33	1.93
3006933--3007042	5	22.4	5	71	10	68	75	7	1	15	1.10
3006933--3006999	19	3.8	17	78	13	73	77	4	1	16	1.00
3006932--3006999	35	1.9	35	85	11	95	77	4	1	16	0.99
3007264--3007302	19	2.1	19	95	0	69	76	0	0	23	0.78
3007269--3007323	15	3.4	16	76	16	60	69	1	1	27	1.09
3009220--3010374	85	13.7	85	86	2	1465	25	18	20	34	1.96
3009220--3010374	337	3.4	337	87	1	1541	25	18	20	34	1.96
3011676--3011862	95	2.0	95	91	0	302	28	18	17	34	1.94
3016284--3016310	4	6.8	4	100	0	54	74	0	0	25	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3017060--3017192	39	3.4	38	76	20	116	76	1	10	11	1.08
3017409--3017479	6	11.8	6	100	0	142	33	33	15	16	1.91
3017475--3017530	4	15.0	4	85	14	84	50	23	0	26	1.50
3017469--3017701	24	9.6	26	72	17	115	49	19	0	30	1.52
3017496--3018501	6	167.5	6	89	6	1198	46	18	4	31	1.68
3020495--3020573	28	2.7	30	82	9	90	27	3	5	63	1.33
3020638--3020692	15	3.7	15	80	9	51	50	1	0	47	1.11
3020695--3020780	28	3.0	28	76	19	88	37	6	2	53	1.41
3020770--3020810	14	2.8	15	88	3	57	46	2	2	48	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!