genome.fa.s8755.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008755.1 Hibiscus syriacus cultivar Beakdansim tig00111847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3030620

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  4  of  14  ( 1657 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627618--627940	68	4.8	68	92	0	520	29	24	14	30	1.95
628294--628557	59	4.5	59	92	0	413	31	20	14	33	1.92
628899--629122	94	2.3	95	86	5	292	24	24	15	35	1.94
629660--629745	43	2.0	43	88	4	129	38	13	30	17	1.89
632137--632174	19	2.0	20	89	5	60	21	15	0	63	1.31
632439--632486	25	1.9	25	87	8	71	77	4	14	4	1.08
634925--634984	30	2.0	31	83	3	77	26	8	10	55	1.61
636905--636952	25	1.9	25	87	8	71	77	2	14	6	1.06
639387--639446	30	2.0	31	83	3	77	26	8	8	56	1.57
641075--641112	19	2.0	20	89	5	60	21	15	0	63	1.31
641371--641431	24	2.5	24	78	5	70	77	1	14	6	1.05
644072--644101	13	2.3	13	94	0	51	63	0	3	33	1.11
644356--644413	20	3.0	20	78	14	59	70	3	1	24	1.12
644355--644401	23	2.0	23	84	8	60	70	4	2	23	1.16
645448--645474	6	4.5	6	100	0	54	85	0	0	14	0.61
645448--645538	12	7.9	11	74	21	55	75	2	3	18	1.04
645467--645536	4	16.8	4	75	21	56	72	2	4	20	1.14
645449--645539	11	7.9	11	73	16	69	75	2	3	18	1.04
645449--645539	16	5.7	15	73	20	69	75	2	3	18	1.04
645551--646072	36	14.5	36	70	14	269	45	5	3	45	1.41
645550--646072	73	7.3	71	74	13	380	46	5	3	45	1.41
645572--645698	64	2.0	64	83	6	159	42	2	4	50	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645702--645768	29	2.2	32	86	7	95	44	7	2	44	1.47
645734--646072	145	2.3	146	85	6	450	47	5	2	44	1.41
646704--647491	249	3.2	249	86	3	950	23	21	25	29	1.99
646728--647572	414	2.0	414	96	0	1555	23	20	25	29	1.99
646704--647649	165	5.7	165	89	3	955	23	21	25	29	1.99
651046--651090	19	2.4	19	92	3	74	66	8	13	11	1.44
651715--651747	17	1.9	17	93	0	57	72	9	12	6	1.26
652696--652725	13	2.3	13	94	0	51	63	0	3	33	1.11
652980--653032	23	2.3	23	80	6	63	71	3	1	22	1.12
652982--653040	20	3.1	20	77	18	56	71	3	1	23	1.11
654075--654101	6	4.5	6	100	0	54	85	0	0	14	0.61
654075--654165	12	7.9	11	74	21	55	75	2	3	18	1.04
654094--654163	4	16.8	4	75	21	56	72	2	4	20	1.14
654076--654166	11	7.9	11	73	16	69	75	2	3	18	1.04
654076--654166	16	5.7	15	73	20	69	75	2	3	18	1.04
654243--654671	36	11.8	35	71	14	178	45	4	3	45	1.41
654318--654384	29	2.2	32	86	7	95	44	7	2	44	1.47
654350--654690	73	4.6	72	81	10	343	46	5	2	45	1.39
654350--654688	145	2.3	146	86	6	459	46	5	2	45	1.39
654762--654821	30	2.0	31	83	3	77	26	8	10	55	1.61
656432--656471	19	2.1	19	85	4	53	20	12	0	67	1.22
658045--658101	29	2.1	28	81	15	66	50	1	0	47	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660570--660632	11	5.9	11	76	12	51	46	4	1	47	1.33
660548--660638	31	2.9	31	88	4	130	49	4	1	45	1.29
661120--661237	35	3.3	36	86	5	159	31	6	19	42	1.77
662430--662461	15	2.1	15	94	0	55	53	15	25	6	1.65
665754--665849	21	5.2	21	64	31	76	30	5	20	43	1.74
665746--665899	35	4.3	36	93	4	242	31	5	19	44	1.73
667014--667153	68	2.1	68	100	0	280	23	12	20	43	1.86
670617--670656	15	2.7	15	84	7	55	27	0	7	65	1.20
670632--670670	18	2.2	17	90	4	60	28	0	12	58	1.34
687017--687042	12	2.2	12	100	0	52	34	0	26	38	1.57
688930--688972	17	2.5	17	96	0	77	16	39	11	32	1.84
693270--693310	18	2.3	18	86	0	55	51	2	0	46	1.14
695886--695941	25	2.3	25	87	3	78	8	16	44	30	1.78
696004--696043	3	13.3	3	94	0	71	67	2	0	30	1.04
696225--696709	131	3.7	129	82	2	531	30	18	21	30	1.97
697995--698060	8	8.4	8	73	19	50	4	13	1	80	0.94
698004--698058	22	2.7	19	82	15	74	5	14	0	80	0.89
697992--698061	13	5.2	13	76	19	56	7	12	1	78	1.01
706721--706777	23	2.5	23	88	0	87	31	26	24	17	1.97
707127--707164	2	19.0	2	100	0	76	50	0	0	50	1.00
707227--707263	2	18.5	2	100	0	74	48	0	0	51	1.00
708380--708541	64	2.5	63	81	5	182	24	23	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
708861--708896	13	2.8	13	100	0	72	30	16	5	47	1.70
712585--712634	11	4.2	12	78	12	50	70	14	0	16	1.18
715157--715240	30	2.8	30	92	0	141	11	30	21	35	1.90
717720--717785	20	3.3	20	80	16	82	31	27	18	22	1.97
717787--717845	19	3.1	19	78	7	57	30	20	15	33	1.93
722102--722136	17	2.1	17	94	0	61	45	22	20	11	1.82
722117--722212	33	2.9	33	93	0	165	45	20	21	11	1.83
722102--722215	19	6.6	19	71	20	90	45	21	21	11	1.83
722220--722314	20	4.8	20	79	5	102	12	16	25	45	1.83
722221--722274	19	2.8	20	88	5	83	7	18	27	46	1.76
722365--722743	94	4.1	94	95	1	656	47	18	12	21	1.82
724402--724554	20	8.7	20	68	26	114	46	19	22	11	1.81
724449--724537	14	5.6	14	69	23	61	43	21	24	10	1.83
724400--724554	33	4.5	33	88	6	220	46	19	23	10	1.81
724571--724627	14	3.7	14	70	20	51	8	22	22	45	1.80
724566--724635	33	2.1	33	97	0	131	8	22	20	48	1.76
724612--724690	20	3.8	20	83	5	88	11	17	17	53	1.73
725221--725319	21	4.8	21	88	2	148	22	20	19	38	1.94
725221--725319	41	2.4	42	89	3	148	22	20	19	38	1.94
725223--725358	21	6.6	20	79	6	101	25	19	22	32	1.97
728288--728322	9	4.1	9	89	10	56	34	0	0	65	0.93
729140--729164	12	2.1	12	100	0	50	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
729291--729329	19	2.0	19	85	5	51	66	0	17	15	1.25
729453--729510	29	2.0	30	83	10	75	56	5	13	24	1.57
730630--730681	5	10.4	5	83	8	54	76	1	0	21	0.87
730618--730684	19	3.5	19	71	16	57	74	1	2	20	1.03
730620--730681	24	2.8	21	75	15	61	75	1	3	19	1.02
730620--730684	22	2.9	22	73	13	60	75	1	3	20	1.02
730679--730923	36	6.8	37	68	20	128	48	6	2	42	1.42
730682--730823	63	2.2	63	83	9	171	48	5	1	44	1.35
730752--730922	37	4.6	37	80	9	197	45	6	4	44	1.48
730678--730863	101	1.8	105	82	6	247	49	5	2	43	1.37
730752--730923	75	2.3	75	85	7	237	45	6	4	44	1.48
731566--732181	81	7.5	82	75	6	573	23	20	25	30	1.99
731509--732140	164	3.8	164	91	0	933	24	19	25	30	1.98
735535--735571	19	1.9	19	94	0	65	67	10	8	13	1.41
737192--737216	12	2.1	12	100	0	50	60	0	0	40	0.97
737343--737381	19	2.0	19	85	5	51	66	0	17	15	1.25
737505--737562	29	2.0	30	83	10	75	56	5	13	24	1.57
738680--738727	5	9.4	5	82	8	53	75	2	0	22	0.91
738668--738730	18	3.5	18	71	16	58	73	1	3	22	1.07
738772--738834	26	2.4	26	86	5	83	47	4	1	46	1.33
738798--738966	37	4.6	37	80	9	193	44	6	4	44	1.49
738728--738869	63	2.2	66	83	9	177	47	5	1	45	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
738798--738966	75	2.3	73	84	8	227	44	6	4	44	1.49
742586--742808	44	5.2	42	91	3	347	31	24	26	17	1.97
742585--742808	87	2.6	86	90	3	369	32	24	26	17	1.97
747260--747293	16	2.1	16	100	0	68	29	35	23	11	1.90
748011--748037	5	5.4	5	100	0	54	0	18	0	81	0.69
756784--756817	16	2.1	16	94	0	59	32	8	26	32	1.87
763892--763986	45	2.1	45	88	0	136	26	5	12	55	1.58
768140--768179	6	6.3	6	83	11	53	77	0	20	2	0.88
768140--768180	13	3.2	13	82	0	55	78	0	19	2	0.87
770182--770317	51	2.6	52	88	1	202	41	19	20	18	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14