genome.fa.s8755.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008755.1 Hibiscus syriacus cultivar Beakdansim tig00111847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3030620

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  6  of  14  ( 1657 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
967695--967790	42	2.4	39	86	10	122	15	3	3	78	1.01
967808--967848	12	3.6	12	80	12	59	7	4	4	82	0.93
967806--967850	22	2.0	22	100	0	90	8	4	4	82	0.94
968269--968403	60	2.2	60	84	5	166	45	13	5	36	1.66
969317--969385	31	2.2	31	87	5	95	47	13	5	33	1.66
975440--975517	39	2.0	39	100	0	156	17	23	17	41	1.91
975869--975956	30	2.9	30	84	3	97	22	17	10	50	1.76
976291--976362	21	3.4	21	83	7	83	27	30	12	29	1.93
977353--977393	21	1.9	21	85	5	55	56	19	9	14	1.66
981565--981606	17	2.5	17	85	11	52	35	19	19	26	1.95
984380--984429	25	2.0	25	84	11	66	56	0	4	40	1.18
986297--986325	13	2.2	13	100	0	58	41	6	37	13	1.72
993362--993753	138	2.8	138	83	4	475	27	20	17	34	1.94
994097--994333	101	2.4	99	88	3	341	43	9	14	32	1.78
1008265--1008327	20	2.9	21	79	9	65	15	25	34	23	1.95
1012129--1012168	21	1.9	21	85	10	55	35	10	2	52	1.48
1021637--1021661	9	2.8	9	100	0	50	24	16	24	36	1.94
1047613--1047728	58	2.0	58	96	0	214	33	20	20	25	1.97
1048475--1049163	5	137.6	5	94	2	1179	20	20	20	39	1.93
1059637--1059688	23	2.2	24	82	6	61	13	9	7	69	1.37
1070706--1070762	22	2.6	22	80	0	69	22	14	21	42	1.88
1078421--1078488	27	2.6	27	93	4	113	32	11	14	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1082187--1082254	27	2.6	27	95	4	122	30	11	16	41	1.84
1085308--1085370	32	2.0	32	83	0	81	28	0	7	63	1.22
1086641--1086754	59	1.9	58	82	5	140	24	7	13	54	1.65
1089020--1089362	173	2.0	170	96	4	627	37	5	21	36	1.76
1092602--1092642	20	2.0	20	85	4	55	58	4	0	36	1.20
1098189--1098235	20	2.3	20	96	0	85	29	23	29	17	1.97
1113902--1113948	13	3.6	13	91	0	76	29	17	19	34	1.94
1124218--1124267	21	2.5	19	81	15	57	22	10	0	68	1.19
1128904--1129553	46	14.2	46	88	4	719	44	12	22	21	1.85
1129135--1129553	72	6.0	72	74	18	373	44	11	21	21	1.84
1128904--1129387	164	3.0	164	89	3	768	43	11	22	21	1.85
1128904--1129499	210	2.9	202	84	9	801	43	11	22	21	1.85
1129006--1129543	20	23.6	20	73	20	185	44	11	22	21	1.84
1138930--1138984	24	2.3	24	93	6	94	16	30	5	47	1.69
1149599--1149632	17	2.0	17	88	0	50	55	0	2	41	1.15
1149463--1149858	146	2.8	140	79	9	381	47	4	3	44	1.41
1151370--1151417	22	2.2	22	96	0	87	43	8	12	35	1.73
1152393--1152420	14	2.0	14	100	0	56	28	14	21	35	1.92
1155369--1155393	13	1.9	13	100	0	50	12	16	16	56	1.68
1161685--1161718	16	2.1	16	88	0	50	32	5	5	55	1.48
1163577--1163668	42	2.2	42	90	0	139	17	10	20	51	1.75
1163826--1163923	19	4.9	19	66	23	51	50	2	0	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1163968--1164042	19	3.9	19	75	13	73	50	2	1	45	1.24
1164037--1164081	23	2.0	23	86	0	63	53	2	2	42	1.25
1164176--1164214	19	2.0	20	85	5	53	61	0	0	38	0.96
1164380--1164420	14	2.9	14	88	0	55	36	19	14	29	1.92
1164422--1164480	14	4.1	15	91	6	95	28	20	6	44	1.77
1164422--1164480	29	2.0	29	93	0	100	28	20	6	44	1.77
1165522--1165618	46	2.1	46	86	0	140	34	21	5	39	1.76
1165522--1165610	16	5.7	16	68	10	67	33	21	5	39	1.77
1165820--1165855	14	2.6	14	90	0	54	22	13	5	58	1.56
1167652--1167696	22	2.0	22	82	8	54	57	15	11	15	1.64
1168521--1168564	19	2.2	20	80	8	54	56	4	0	38	1.20
1168860--1169585	91	8.0	91	92	1	1021	25	22	15	36	1.94
1172756--1172830	23	3.3	23	96	3	134	25	14	25	34	1.94
1176262--1176525	65	4.1	65	87	9	312	32	23	17	26	1.97
1176375--1176554	65	2.8	64	81	13	201	28	23	17	29	1.97
1176310--1176554	129	1.9	130	83	10	324	30	24	17	28	1.97
1183979--1184029	25	2.0	25	88	7	77	58	13	1	25	1.46
1194225--1194274	24	2.1	24	88	7	75	58	14	2	26	1.47
1196481--1196511	2	15.5	2	100	0	62	48	0	0	51	1.00
1196997--1197120	46	2.7	46	87	6	164	30	20	16	31	1.95
1200001--1200056	22	2.7	20	76	10	58	32	14	25	28	1.94
1199926--1200149	94	2.4	95	82	3	256	33	14	24	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1200468--1200762	59	5.0	59	91	0	473	33	13	21	31	1.92
1201113--1201247	68	2.0	68	80	0	153	32	17	22	27	1.96
1201183--1201340	81	2.0	81	89	0	244	39	12	20	27	1.88
1201654--1201719	28	2.4	28	89	7	107	34	6	27	31	1.81
1205036--1205261	94	2.4	95	85	3	289	35	16	23	23	1.95
1205600--1205945	59	5.9	59	89	2	480	32	15	20	32	1.93
1206361--1206430	24	2.9	24	95	2	122	47	11	18	22	1.81
1207060--1207170	2	55.5	2	100	0	222	49	0	0	50	1.00
1207671--1207721	3	17.3	3	80	11	61	60	0	0	39	0.97
1207672--1207721	22	2.3	22	86	6	66	62	0	0	38	0.96
1207671--1207721	19	2.7	19	87	6	68	60	0	0	39	0.97
1209775--1209818	19	2.4	19	85	7	56	27	29	18	25	1.98
1217231--1217274	21	2.1	21	82	0	52	9	43	15	31	1.79
1217659--1217693	15	2.3	15	85	0	52	20	0	25	54	1.45
1218387--1218439	19	2.8	19	81	16	65	30	30	16	22	1.96
1224710--1224761	24	2.2	24	83	10	63	57	7	1	32	1.38
1225160--1225211	21	2.4	21	81	15	54	32	26	11	28	1.91
1225181--1225254	23	3.3	23	86	3	107	32	27	10	29	1.90
1227924--1228160	45	5.3	45	86	3	289	32	18	8	40	1.81
1228691--1228750	22	2.9	20	88	9	93	26	31	13	28	1.94
1228789--1228844	22	2.5	22	81	13	62	30	30	12	26	1.93
1228689--1228929	95	2.6	93	83	7	281	31	26	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1234594--1234870	45	6.2	45	83	3	290	29	20	9	39	1.85
1235359--1235451	22	4.6	20	78	12	100	27	27	10	33	1.90
1235416--1235599	95	1.9	94	86	7	257	29	25	15	29	1.95
1240745--1240820	23	3.4	22	77	13	66	30	23	17	28	1.97
1243908--1244218	153	2.0	155	98	1	608	28	20	18	31	1.97
1246720--1246758	20	2.0	20	84	0	51	30	12	23	33	1.92
1247066--1247126	25	2.3	27	81	16	74	27	37	26	8	1.85
1251240--1251704	139	3.3	137	86	3	610	30	27	18	23	1.97
1253375--1253456	16	5.2	16	75	5	78	34	28	6	31	1.82
1253367--1253483	46	2.5	46	87	0	162	32	28	6	32	1.83
1253375--1253482	16	7.0	16	71	8	71	32	27	6	33	1.82
1253632--1253672	14	2.7	15	85	14	57	26	12	4	56	1.56
1253676--1253711	14	2.6	14	90	0	54	22	13	5	58	1.56
1254710--1254755	18	2.6	18	96	3	85	36	0	6	56	1.25
1262778--1262820	16	2.6	16	81	3	50	48	30	4	16	1.66
1266715--1266789	37	2.0	37	97	0	141	53	0	4	42	1.19
1278831--1278894	29	2.1	29	82	5	74	29	10	21	37	1.88
1284279--1284441	60	2.7	61	75	8	163	44	4	17	32	1.70
1289493--1289582	33	2.7	34	85	3	137	36	23	15	24	1.94
1294152--1294241	33	2.7	34	85	3	128	37	21	15	25	1.92
1299536--1299598	22	2.9	22	90	6	94	25	19	25	30	1.98
1299847--1299890	18	2.4	18	84	0	52	56	2	13	27	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1305408--1305906	85	5.9	85	87	0	662	35	19	18	26	1.95
1305408--1305906	169	2.9	168	87	1	710	35	19	18	26	1.95
1305408--1305906	254	2.0	255	86	1	696	35	19	18	26	1.95
1306689--1306773	40	2.2	40	87	4	120	44	4	10	40	1.60
1306830--1306862	2	16.5	2	100	0	66	51	0	0	48	1.00
1306799--1306956	55	2.9	55	81	10	177	46	1	5	46	1.35
1306885--1306919	2	17.5	2	100	0	70	51	0	0	48	1.00
1306959--1306985	14	1.9	14	100	0	54	44	7	7	40	1.60
1306907--1307025	39	3.1	37	83	10	143	46	3	6	43	1.46
1307570--1307625	25	2.2	26	84	9	71	66	16	10	7	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14