genome.fa.s8755.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008755.1 Hibiscus syriacus cultivar Beakdansim tig00111847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3030620

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  8  of  14  ( 1657 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1524406--1524445	20	1.9	20	90	10	62	55	0	0	45	0.99
1524406--1524456	20	2.6	20	78	3	59	54	0	0	45	0.99
1524418--1524466	17	2.8	17	84	3	62	55	0	0	44	0.99
1524218--1524600	198	1.9	200	95	1	698	35	15	13	34	1.87
1524637--1524731	37	2.6	37	85	3	113	23	18	18	38	1.93
1524942--1525034	42	2.2	42	88	0	141	32	21	21	24	1.98
1524962--1525038	20	3.8	20	73	13	57	32	23	22	22	1.98
1524951--1525014	20	3.0	21	70	17	69	31	25	18	25	1.98
1527910--1527945	14	2.5	14	95	4	63	52	8	16	22	1.70
1533677--1533715	4	10.0	4	94	5	71	51	23	0	25	1.49
1535282--1535360	23	3.4	23	75	0	86	27	12	44	15	1.82
1535628--1535692	22	3.0	22	82	6	78	53	1	0	44	1.09
1535628--1535688	17	3.6	17	82	8	63	54	1	0	44	1.10
1535630--1535692	14	4.2	15	80	10	67	53	1	0	44	1.10
1536892--1537303	81	5.1	81	86	1	565	35	10	20	33	1.88
1538837--1538926	23	3.9	23	79	0	108	33	23	21	22	1.97
1542087--1542122	17	2.1	17	94	0	63	16	22	5	55	1.62
1549066--1549188	62	2.0	62	87	3	176	50	10	7	31	1.64
1550549--1550598	25	2.0	25	84	7	66	24	10	16	50	1.75
1551426--1551460	2	17.5	2	100	0	70	51	0	0	48	1.00
1565310--1565354	21	2.1	21	87	0	63	31	28	24	15	1.96
1566131--1566284	31	5.0	31	94	1	256	20	20	22	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1567938--1568074	35	3.9	35	85	1	157	34	14	11	39	1.83
1567938--1568076	71	2.0	71	80	4	156	34	14	11	39	1.82
1568219--1568412	66	2.9	63	77	8	190	23	22	14	39	1.91
1568472--1568774	134	2.3	131	83	4	367	26	29	18	26	1.98
1572010--1572188	98	1.8	99	91	3	299	51	5	3	39	1.42
1573383--1573409	3	9.0	3	100	0	54	66	0	0	33	0.92
1573626--1573657	17	1.9	16	93	6	55	37	0	0	62	0.95
1573798--1573861	22	2.9	22	75	13	69	35	1	0	62	1.05
1573814--1573862	21	2.3	22	82	10	57	34	2	0	63	1.06
1573972--1574019	16	2.8	17	75	18	55	45	8	0	45	1.33
1575132--1575172	21	2.0	21	85	0	55	39	2	2	56	1.26
1577011--1577044	14	2.5	13	90	4	50	44	0	2	52	1.16
1577011--1577066	27	2.1	26	81	18	62	41	1	3	53	1.29
1578045--1578128	26	3.2	25	75	12	71	20	1	3	75	1.03
1578071--1578108	20	1.9	19	94	5	67	18	0	0	81	0.69
1578070--1578107	10	3.9	10	83	16	53	18	0	0	81	0.69
1580645--1580997	106	3.3	106	88	2	539	36	16	9	37	1.81
1580951--1581029	32	2.5	31	89	8	122	35	16	10	37	1.82
1585892--1586002	6	18.3	6	73	19	56	79	3	16	0	0.93
1585899--1586001	4	26.8	4	75	16	69	79	2	16	0	0.90
1585897--1586002	18	6.1	17	75	9	70	80	2	16	0	0.89
1585891--1586002	49	2.3	47	85	8	138	78	4	16	0	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1585912--1586002	40	2.3	41	74	14	100	79	3	16	1	0.93
1587534--1587602	22	3.1	24	83	10	69	55	5	0	39	1.24
1587542--1587612	22	3.2	22	88	6	99	54	5	0	39	1.24
1589487--1589535	2	24.5	2	100	0	98	51	0	0	48	1.00
1591287--1591645	194	1.9	194	82	1	459	37	12	12	38	1.81
1592477--1592566	44	2.0	44	91	0	144	34	15	21	28	1.94
1594644--1594888	102	2.4	100	79	8	253	33	16	11	37	1.86
1595149--1595271	61	2.0	61	87	3	176	38	23	10	27	1.88
1595157--1595299	61	2.3	61	82	4	164	36	23	12	27	1.91
1600387--1600482	49	1.9	50	89	2	149	42	15	19	21	1.88
1601772--1601844	36	2.0	37	83	2	94	20	6	13	58	1.58
1605488--1605518	15	2.1	15	100	0	62	51	12	22	12	1.74
1605439--1605916	182	2.7	176	82	5	594	42	12	15	29	1.84
1608294--1608337	21	2.1	21	91	0	70	43	11	31	13	1.80
1608371--1608436	33	2.0	33	93	0	114	27	3	45	24	1.68
1608618--1608656	18	2.2	18	95	0	69	64	0	33	2	1.08
1610209--1610257	19	2.6	19	96	0	89	32	2	10	55	1.45
1610569--1610607	15	2.6	15	87	0	60	38	23	12	25	1.90
1610624--1611772	200	5.8	200	83	5	1323	37	14	16	31	1.89
1614504--1614556	24	2.2	24	82	0	61	33	3	15	47	1.63
1615766--1616724	198	4.9	197	82	5	1089	37	13	16	32	1.88
1620738--1621422	198	3.5	198	84	6	856	39	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1621445--1621604	84	1.9	86	90	2	261	33	14	11	41	1.81
1625551--1625675	61	2.0	62	98	1	243	36	7	19	36	1.79
1627918--1627982	24	2.8	23	81	4	85	23	26	23	27	2.00
1628509--1628550	21	2.0	21	85	0	57	28	19	26	26	1.98
1631633--1632090	182	2.5	183	88	0	650	43	13	16	26	1.85
1632011--1632058	20	2.5	20	77	16	64	54	10	16	18	1.70
1633919--1634940	182	5.6	182	93	1	1694	42	12	16	28	1.85
1635811--1635862	11	4.7	11	76	9	61	57	21	1	19	1.50
1635960--1636111	36	4.2	36	94	0	268	15	24	24	35	1.94
1638100--1638150	27	1.9	26	84	11	68	31	0	21	47	1.51
1645458--1645489	15	2.1	16	94	5	57	46	12	6	34	1.67
1653108--1653165	20	2.9	20	77	10	64	22	6	12	58	1.57
1657781--1657865	24	3.5	24	85	0	116	16	16	16	50	1.78
1657794--1657863	12	5.8	12	80	6	70	15	15	17	51	1.77
1660830--1660880	22	2.3	22	89	0	75	41	13	21	23	1.89
1661412--1661475	21	3.0	21	84	4	92	29	23	23	23	1.99
1668390--1668431	22	1.9	22	85	0	57	30	21	23	23	1.99
1670869--1670907	21	1.9	20	84	5	51	38	17	12	30	1.88
1673906--1674008	36	2.9	36	97	0	188	23	16	17	42	1.88
1683346--1683389	19	2.5	17	82	10	61	40	18	2	38	1.63
1684630--1684696	10	6.5	10	75	14	57	56	1	2	38	1.24
1694439--1694505	27	2.5	27	80	0	89	10	23	17	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1694700--1695081	190	2.0	190	96	3	705	34	12	12	40	1.81
1700517--1700564	15	3.3	15	71	11	55	56	2	6	35	1.36
1710319--1710355	14	2.6	14	91	0	56	13	13	51	21	1.75
1713616--1713701	43	2.0	43	81	6	102	48	2	13	34	1.56
1715887--1715930	24	1.9	22	86	9	61	56	11	4	27	1.53
1718236--1718265	14	2.1	14	100	0	60	86	0	6	6	0.70
1719974--1720003	15	2.0	15	100	0	60	26	13	20	40	1.89
1725640--1725681	22	1.9	22	90	0	66	42	0	4	52	1.22
1725651--1725692	22	1.9	22	85	0	57	38	2	11	47	1.53
1725834--1725886	12	4.2	12	83	13	54	13	1	3	81	0.92
1725825--1725880	13	4.4	14	76	17	50	14	1	5	78	1.00
1729633--1730229	54	11.1	54	88	0	762	36	18	17	27	1.94
1729669--1729754	27	3.2	27	63	12	68	36	18	17	27	1.94
1729750--1729835	27	3.2	27	63	18	70	40	18	15	25	1.89
1735617--1735789	90	1.9	89	94	1	301	38	10	6	44	1.66
1745658--1745726	20	3.5	20	92	2	104	46	11	18	23	1.82
1746094--1746143	20	2.5	20	90	0	73	46	12	18	24	1.82
1745677--1746441	417	1.8	421	94	2	1355	40	10	20	28	1.86
1746545--1747045	54	9.4	54	82	4	568	35	20	17	26	1.94
1747341--1747443	15	6.9	15	82	2	136	42	5	19	32	1.75
1747341--1747443	30	3.5	30	95	1	190	42	5	19	32	1.75
1747429--1747494	20	3.3	20	97	2	125	42	9	16	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1747801--1747874	27	2.9	27	79	16	77	54	1	1	43	1.17
1747922--1747970	21	2.3	22	80	16	59	46	0	0	53	1.00
1747920--1747981	23	2.6	23	80	17	65	46	0	0	53	1.00
1748136--1748208	19	3.8	19	98	0	137	38	13	21	26	1.91
1748193--1748304	42	2.7	42	95	0	197	47	17	18	16	1.83
1750298--1750365	3	23.0	3	82	8	77	35	0	0	64	0.94
1751832--1751856	4	6.2	4	100	0	50	24	0	0	76	0.80
1751907--1752198	150	1.9	156	84	8	404	41	6	6	45	1.56
1752179--1752220	2	21.5	2	95	4	77	52	0	0	47	1.00
1763474--1763517	15	2.8	16	83	16	56	81	0	9	9	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14