genome.fa.s8755.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008755.1 Hibiscus syriacus cultivar Beakdansim tig00111847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3030620

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1657 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226108--226569	105	4.3	105	93	1	744	33	25	18	23	1.97
228196--228263	3	20.7	3	91	8	82	36	1	0	61	1.05
228286--228350	23	2.8	23	70	11	60	23	7	0	69	1.14
228482--228509	2	14.0	2	100	0	56	50	0	0	50	1.00
228728--228765	17	2.2	18	85	4	51	23	5	2	68	1.23
228728--228772	18	2.6	17	85	3	54	22	4	4	68	1.25
234106--234959	156	5.4	156	82	6	1037	29	18	4	48	1.67
234147--234961	314	2.6	313	93	2	1388	29	17	4	48	1.67
235589--235987	149	2.7	147	80	7	441	38	8	13	39	1.74
237891--237919	7	4.3	7	91	8	51	13	13	13	58	1.63
243544--243634	20	4.6	20	95	0	155	19	25	10	43	1.84
244457--244492	16	2.2	16	90	9	56	38	5	0	55	1.23
244450--244491	16	2.7	15	76	20	50	42	4	0	52	1.22
251898--251924	13	2.1	13	100	0	54	40	0	7	51	1.30
254023--254413	110	3.5	111	88	3	520	31	19	20	28	1.97
255698--255786	23	3.5	23	70	28	65	11	10	0	78	0.96
255727--255766	14	2.6	16	88	11	57	10	15	0	75	1.05
255698--255789	15	6.0	15	73	13	62	10	10	0	78	0.97
263556--263620	23	2.8	23	85	0	94	36	23	21	18	1.95
268337--268836	252	2.0	252	95	4	911	40	11	11	36	1.79
270295--270347	21	2.6	21	75	16	58	47	7	0	45	1.31
273214--273240	14	1.9	14	100	0	54	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272903--273512	296	2.1	301	95	4	1107	33	16	17	32	1.93
284321--284351	10	3.0	10	90	9	53	67	0	32	0	0.91
284765--284805	19	2.1	19	86	9	55	60	4	4	29	1.38
286496--286530	18	1.9	18	88	0	52	25	31	20	22	1.98
287363--287416	20	2.7	20	94	0	90	27	33	16	22	1.95
291728--291786	22	2.6	22	86	2	82	27	20	22	30	1.98
297932--297959	13	2.2	13	100	0	56	32	14	14	39	1.86
298028--298060	15	2.1	16	88	5	50	36	15	21	27	1.93
298022--298075	20	3.0	19	79	20	71	37	14	20	27	1.92
298758--298800	23	1.9	22	95	4	77	25	23	25	25	2.00
301557--301584	3	9.3	3	100	0	56	32	0	0	67	0.91
301821--301849	2	14.5	2	100	0	58	51	0	0	48	1.00
303346--303391	18	2.3	20	82	17	53	19	6	19	54	1.66
305122--305208	31	2.8	31	72	8	77	41	10	12	35	1.77
311443--311532	42	2.1	42	95	0	162	46	18	16	17	1.84
312051--312102	14	3.6	14	74	5	50	36	15	7	40	1.76
313418--313459	22	1.9	22	95	0	75	38	9	4	47	1.57
315025--315078	26	2.1	26	85	0	72	29	3	18	48	1.65
320223--320368	54	2.7	54	93	1	238	37	4	22	34	1.76
320464--320518	23	2.4	23	79	11	60	38	5	12	43	1.66
320460--320531	22	3.2	21	79	13	65	40	5	12	41	1.66
321162--321373	99	2.1	99	85	1	291	33	14	18	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321543--321648	20	5.6	19	78	14	103	37	3	0	58	1.16
321542--321648	3	36.0	3	79	9	103	37	3	0	58	1.16
327244--327594	112	3.1	112	92	0	551	43	14	15	26	1.85
328357--328404	23	2.1	23	84	0	60	37	16	10	35	1.83
331610--331647	20	1.9	20	89	10	60	36	15	15	31	1.90
332795--332836	20	2.1	20	95	0	75	26	28	23	21	1.99
338046--338106	27	2.2	29	77	14	74	36	4	1	57	1.30
339362--339415	3	17.7	3	81	7	56	57	0	1	40	1.09
339362--339419	14	4.1	14	77	20	59	56	0	1	41	1.09
339361--339419	20	2.8	21	82	10	75	55	0	1	42	1.09
339362--339415	26	2.1	26	86	6	74	57	0	1	40	1.09
339567--339615	20	2.5	20	93	0	80	30	16	22	30	1.96
339681--339734	20	2.7	20	88	0	72	27	20	22	29	1.98
339552--339833	119	2.4	119	93	1	485	31	18	14	36	1.91
339701--340150	99	4.3	99	79	10	513	29	17	14	38	1.90
339904--339952	20	2.5	20	86	0	62	26	14	24	34	1.94
339804--340051	119	2.1	119	93	0	415	29	16	16	37	1.90
339582--340872	218	5.6	218	87	6	1630	30	17	14	37	1.90
339805--340872	238	4.6	238	90	3	1647	30	17	14	37	1.90
340123--340170	20	2.4	20	85	0	60	29	14	22	33	1.94
340237--340290	20	2.7	20	88	0	81	29	20	22	27	1.98
340362--340409	20	2.4	20	85	0	60	27	14	22	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340018--340872	119	7.2	119	93	0	1415	30	17	14	36	1.90
340474--340528	20	2.8	20	82	0	74	25	18	21	34	1.96
340594--340647	20	2.7	20	91	0	81	25	20	22	31	1.98
340713--340766	20	2.7	20	85	0	72	27	20	24	27	1.99
343562--343673	22	5.1	22	78	16	83	9	6	0	83	0.79
343568--343673	28	3.7	29	91	6	155	9	6	0	83	0.79
343539--343690	6	26.3	6	79	10	113	7	11	0	81	0.87
343561--343669	1	109.0	1	68	0	65	10	5	0	84	0.77
343540--343690	22	6.8	21	76	12	81	7	11	0	81	0.87
343549--343685	28	4.7	29	83	8	145	8	9	0	82	0.84
351190--351250	27	2.2	29	77	14	74	36	3	1	59	1.24
352482--352540	3	19.7	3	79	10	59	59	0	1	38	1.08
352736--352790	23	2.4	23	84	0	74	40	0	3	56	1.17
352764--352805	16	2.8	15	79	10	50	35	2	2	59	1.23
352892--352932	15	2.9	14	85	7	55	58	2	2	36	1.24
352909--352953	23	2.0	23	81	0	54	55	2	0	42	1.12
356833--356878	3	15.7	3	86	4	67	32	4	0	63	1.14
363210--363250	2	20.5	2	100	0	82	48	0	0	51	1.00
367443--367977	182	2.9	182	95	1	957	26	21	21	30	1.98
369123--369293	72	2.3	75	84	7	208	26	17	12	43	1.84
369309--369461	39	3.6	39	66	21	101	27	22	13	37	1.91
369364--369681	104	3.1	104	92	1	498	30	21	11	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369582--369652	36	2.0	36	88	0	106	25	23	16	33	1.96
369856--370429	105	5.5	105	91	1	845	34	25	17	21	1.95
371455--371497	18	2.5	17	85	7	61	25	4	2	67	1.22
376213--376265	27	1.9	28	84	3	72	28	3	5	62	1.35
376946--376984	16	2.4	16	87	8	53	64	7	0	28	1.21
382313--382351	20	2.1	19	90	9	62	35	15	25	23	1.94
383060--383178	21	5.6	21	76	4	105	25	11	22	40	1.88
383142--383196	23	2.3	23	84	3	65	25	10	25	38	1.88
385191--385239	21	2.3	21	85	0	71	26	28	22	22	1.99
385796--385866	20	3.5	20	88	9	101	26	18	22	32	1.97
388966--389018	21	2.5	21	87	0	79	28	26	20	24	1.99
389577--389647	20	3.5	20	88	9	101	26	18	22	32	1.97
395321--395379	21	2.8	21	86	0	82	27	27	22	23	1.99
397612--397782	86	2.0	88	90	3	274	43	12	10	33	1.76
399658--399987	54	6.2	53	88	3	407	32	19	19	28	1.96
399658--399987	108	3.1	108	87	3	454	32	19	19	28	1.96
399658--399987	162	2.1	159	87	5	468	32	19	19	28	1.96
401255--401302	20	2.6	18	80	6	51	29	10	27	33	1.90
401368--401399	15	2.2	14	94	5	55	28	18	28	25	1.98
401746--402185	162	2.7	162	84	1	603	35	20	17	26	1.94
401746--402185	54	8.1	54	86	0	531	35	20	17	26	1.94
402743--402789	20	2.5	19	86	6	60	34	8	4	53	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403473--403512	16	2.5	16	87	0	62	45	0	35	20	1.51
421195--421271	38	2.0	38	95	5	138	40	10	18	31	1.84
421414--421486	23	3.2	23	84	0	83	17	23	26	32	1.97
421656--421769	2	57.5	2	96	1	212	48	0	0	50	1.06
425068--425127	31	1.9	31	86	6	86	40	3	21	35	1.70
426431--426459	2	14.5	2	100	0	58	48	0	0	51	1.00
430718--430742	13	1.9	13	100	0	50	20	0	0	80	0.72
431069--431154	24	3.6	24	87	0	118	10	17	22	50	1.76
432233--432285	16	3.3	16	94	0	97	11	11	18	58	1.62
438944--438984	15	2.6	16	79	20	50	41	12	0	46	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14