genome.fa.s8912.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008912.1 Hibiscus syriacus cultivar Beakdansim tig00112215_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3753803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  1  of  18  ( 2121 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2862--2950	40	2.2	40	84	7	110	33	14	23	28	1.94
8183--8234	26	2.0	24	82	17	61	28	17	1	51	1.56
9045--9087	22	2.0	22	86	9	61	72	6	0	20	1.08
10323--10366	22	2.0	22	86	8	63	9	13	38	38	1.77
10903--10994	42	2.2	41	82	5	105	30	22	20	26	1.98
11168--11281	42	2.7	41	75	11	106	28	22	20	28	1.98
13361--13454	9	10.7	9	74	13	54	4	17	1	77	0.98
13362--13418	8	6.6	8	73	15	51	1	17	1	78	0.91
13376--13425	19	2.6	19	79	14	59	4	14	2	80	0.95
13347--13409	27	2.4	25	82	15	74	4	14	1	79	0.97
13370--13425	17	3.2	17	74	18	51	3	14	1	80	0.93
13398--13445	24	2.0	25	84	12	64	6	14	0	79	0.92
13341--13455	44	2.6	45	82	12	130	5	15	0	78	0.98
15543--15591	23	2.3	23	79	10	59	73	6	2	18	1.14
15576--15653	8	10.0	8	80	16	85	83	2	1	12	0.82
16526--16653	67	2.0	63	89	6	193	16	9	44	29	1.79
16652--16696	22	2.0	22	86	0	63	8	13	40	37	1.76
19860--19913	22	2.6	20	78	16	56	57	12	7	22	1.60
27477--27568	40	2.3	40	88	3	132	29	16	26	28	1.97
27476--27545	18	3.7	18	69	14	59	27	14	27	31	1.95
27639--27694	20	2.5	23	80	13	64	33	16	30	19	1.94
32429--32470	18	2.4	18	84	11	52	69	4	7	19	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34152--34390	51	4.7	50	82	5	291	25	11	16	47	1.79
34151--34381	101	2.3	103	86	3	324	25	12	16	45	1.82
41380--41972	300	2.0	300	94	0	1035	22	18	28	31	1.97
45835--46026	35	5.6	35	78	9	173	33	15	24	26	1.95
46432--46457	2	13.0	2	100	0	52	50	0	0	50	1.00
52045--52149	39	2.7	40	79	7	126	46	9	2	40	1.51
54987--55026	21	1.9	21	89	0	62	17	17	20	45	1.86
57893--57990	45	2.2	45	85	5	126	28	19	21	30	1.97
66439--66491	19	2.8	19	97	0	97	30	35	16	16	1.92
69574--69631	2	29.0	2	100	0	116	50	0	0	50	1.00
70006--70086	42	1.9	42	85	5	110	44	11	4	39	1.62
69963--70144	100	1.8	100	83	7	244	45	10	4	39	1.59
70055--70363	58	5.3	57	78	8	277	43	8	7	40	1.64
70048--70365	116	2.7	114	77	8	306	43	9	7	40	1.64
70496--70659	89	1.8	89	82	2	213	40	14	9	35	1.79
70488--70685	45	4.4	44	76	9	159	41	15	9	33	1.80
73121--73147	12	2.2	12	100	0	54	51	7	25	14	1.68
73550--73595	24	1.9	25	91	8	78	8	4	36	50	1.53
79681--79710	13	2.3	13	94	0	51	13	20	46	20	1.83
79700--79725	5	5.2	5	100	0	52	0	23	57	19	1.40
83284--83318	18	1.9	18	88	0	52	34	14	0	51	1.42
84654--84690	13	2.8	13	87	0	56	21	21	37	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84630--84695	31	2.1	31	86	5	89	19	21	40	18	1.91
86617--86677	29	2.1	28	87	3	86	40	8	11	39	1.71
92226--92280	16	3.4	16	82	0	74	23	23	12	40	1.89
92550--92596	14	3.7	14	71	26	50	44	0	4	51	1.21
92549--92598	23	2.1	24	96	3	93	48	0	4	48	1.20
92942--92988	14	3.4	14	76	5	51	27	0	27	44	1.55
93105--93131	13	2.1	13	100	0	54	55	0	0	44	0.99
93105--93147	13	3.1	14	86	6	52	55	0	2	41	1.12
93444--93502	21	2.8	21	84	0	64	23	1	25	49	1.60
93448--93522	28	2.7	27	78	15	80	25	1	24	49	1.58
93450--93509	21	2.9	22	82	9	72	25	1	21	51	1.57
93622--93681	7	8.6	7	73	0	57	18	3	38	40	1.67
93732--93828	2	49.5	2	76	15	96	45	3	3	48	1.33
93872--94194	8	40.4	8	87	0	322	41	25	9	24	1.84
93872--94193	16	20.4	16	88	2	382	40	25	9	24	1.84
93873--94194	24	13.2	24	87	2	383	40	25	9	24	1.84
94384--94459	39	1.9	39	86	5	109	25	26	0	48	1.51
94384--94459	19	3.9	20	84	6	111	25	26	0	48	1.51
94585--94623	11	3.4	11	80	13	51	38	5	7	48	1.54
94592--94653	13	4.6	13	76	7	61	43	6	4	45	1.51
94585--94628	13	3.5	13	84	6	56	36	4	9	50	1.55
99263--99340	29	2.6	30	78	10	88	25	43	16	14	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99288--99369	29	2.8	29	84	0	101	24	39	20	15	1.92
99388--99426	18	2.1	19	90	4	62	0	53	17	28	1.44
99546--99612	33	2.0	33	97	0	125	32	11	28	26	1.92
99658--99715	26	2.3	26	87	3	82	48	8	34	8	1.65
99714--99760	14	3.5	13	77	11	51	57	0	40	2	1.11
99860--99900	22	1.9	21	85	5	55	26	0	19	53	1.45
100199--100245	16	3.0	16	84	9	53	29	0	10	59	1.31
100220--100250	15	2.1	14	94	5	53	38	0	6	54	1.26
102397--102511	49	2.4	46	90	8	194	46	12	0	40	1.41
102437--102622	60	3.1	60	96	0	338	46	12	0	40	1.42
102486--102573	21	4.3	21	67	18	60	45	13	0	40	1.44
102382--102912	169	3.2	169	90	4	863	46	12	0	40	1.44
102556--102679	49	2.6	48	92	5	189	45	12	0	41	1.42
102606--102791	60	3.1	60	93	0	320	45	13	0	40	1.48
102797--102874	22	3.3	22	66	19	57	48	8	0	42	1.34
102725--102887	49	3.3	49	93	2	290	47	11	0	41	1.39
102407--102912	109	4.6	109	82	8	604	46	12	0	40	1.44
102871--103191	26	12.8	26	73	14	221	43	9	2	45	1.47
102882--103165	124	2.2	127	85	9	400	43	9	2	45	1.48
103361--103395	17	2.0	18	94	5	63	37	5	0	57	1.23
106413--106503	26	3.3	27	77	11	103	43	1	5	49	1.33
106511--106595	41	2.0	42	95	2	154	20	49	14	16	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106599--106694	29	3.3	29	95	0	165	6	27	35	31	1.82
120750--120783	17	2.1	16	88	5	50	14	8	0	76	1.01
121339--121534	95	2.1	94	85	3	268	34	18	15	31	1.92
122885--122929	12	3.8	12	93	0	81	33	24	13	28	1.93
122912--123116	110	1.9	111	88	1	313	36	21	18	23	1.95
123645--123759	36	3.2	36	86	1	158	29	18	12	40	1.87
123784--123915	36	3.6	36	91	1	201	28	18	11	41	1.85
123911--124125	102	2.1	102	90	0	331	27	19	13	40	1.89
124036--124157	37	3.3	37	81	1	147	24	18	12	44	1.84
124146--124226	31	2.6	31	86	3	101	37	18	8	35	1.82
125788--125835	3	15.7	3	83	16	55	31	0	2	66	1.03
125799--125849	19	2.7	20	88	11	72	29	0	1	68	1.00
125788--125835	13	3.9	12	81	18	55	31	0	2	66	1.03
126047--126086	2	20.0	2	100	0	80	50	0	0	50	1.00
127306--128022	57	12.7	57	88	3	1002	38	9	18	33	1.84
129026--129203	90	2.0	90	92	0	293	44	6	10	37	1.66
130012--130147	68	2.0	68	80	0	155	30	14	24	30	1.95
130319--130419	45	2.2	45	83	0	121	48	5	19	25	1.71
131641--131676	13	2.8	13	91	0	54	25	2	0	72	0.98
144297--144380	42	2.0	42	95	0	150	58	15	3	22	1.53
145410--145458	24	2.0	24	100	0	98	24	16	22	36	1.94
146669--146705	18	2.1	18	89	0	56	32	2	21	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147761--147795	16	2.2	16	90	5	54	71	0	0	28	0.86
149195--149285	30	3.0	29	76	19	96	43	7	18	29	1.78
151750--151789	21	2.0	21	85	14	57	42	2	5	50	1.37
156878--157373	42	11.6	42	78	5	433	31	16	26	25	1.97
156901--157373	85	5.6	85	81	4	454	30	17	26	25	1.97
161096--161317	41	5.4	41	83	2	284	34	17	19	29	1.94
161096--161385	82	3.5	82	83	5	320	33	17	18	30	1.94
161100--161389	123	2.4	124	78	2	289	32	18	18	30	1.95
161286--161385	42	2.4	41	77	6	121	31	20	18	31	1.96
161451--161553	40	2.5	40	93	1	170	31	16	22	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18