genome.fa.s8912.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008912.1 Hibiscus syriacus cultivar Beakdansim tig00112215_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3753803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  3  of  18  ( 2121 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322409--322457	22	2.2	22	85	7	64	28	18	20	32	1.96
341243--341300	3	19.3	3	100	0	116	67	0	32	0	0.91
346483--346523	20	2.1	19	86	4	55	34	2	36	26	1.70
349007--349036	14	2.1	14	93	0	51	23	33	6	36	1.81
350857--350899	22	2.0	22	95	0	77	39	11	4	44	1.62
352155--352195	20	2.1	19	86	4	55	34	2	36	26	1.70
352891--352926	16	2.2	16	90	0	54	19	27	11	41	1.85
353629--353662	17	2.0	17	94	0	59	20	14	17	47	1.83
353860--353919	3	20.3	3	89	3	95	35	0	0	65	0.93
354629--354708	25	3.2	25	72	21	76	72	7	16	3	1.22
355564--355703	30	4.7	32	77	15	129	18	13	10	57	1.65
355554--355694	60	2.3	60	80	7	153	17	13	11	58	1.64
360791--360821	16	1.9	16	100	0	62	51	22	0	25	1.48
361643--361748	43	2.6	40	82	7	115	25	33	19	20	1.97
361627--361885	131	2.0	131	85	0	356	27	31	18	22	1.97
361627--361974	131	2.6	131	81	4	326	27	31	17	23	1.97
362163--362227	28	2.3	29	79	12	73	30	4	1	63	1.24
362811--362896	42	2.1	41	80	10	95	72	4	17	5	1.22
363675--363765	30	3.1	29	81	10	78	19	12	9	58	1.62
363689--363833	30	4.8	30	73	6	123	17	12	10	60	1.59
363689--363833	60	2.4	59	79	6	148	17	12	10	60	1.59
363745--363790	21	2.1	22	84	4	58	21	13	8	56	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363797--363878	30	2.8	28	75	5	74	10	10	15	62	1.55
363958--363995	15	2.4	16	91	4	60	15	10	5	68	1.36
370323--370385	23	2.7	23	92	0	99	38	20	4	36	1.74
370531--370597	30	2.2	29	82	10	73	43	0	4	52	1.21
369963--371448	430	3.5	430	97	0	2828	38	12	7	41	1.70
370753--370815	23	2.7	23	92	0	99	38	20	4	36	1.74
371183--371245	23	2.7	23	92	0	99	38	20	4	36	1.74
371668--371753	39	2.2	39	93	0	145	18	13	18	48	1.80
372011--372047	18	2.1	18	89	0	56	51	10	5	32	1.60
372478--372540	23	2.7	23	92	0	99	38	20	4	36	1.74
372887--372952	25	2.6	25	80	0	87	42	13	9	34	1.76
375420--376278	183	4.7	183	96	0	1531	33	16	14	35	1.89
377780--377818	3	13.0	3	88	0	60	28	33	2	35	1.71
377780--377872	12	8.2	12	73	13	54	22	32	8	36	1.85
377796--377872	36	2.1	36	85	0	100	20	32	10	36	1.87
377814--377875	18	3.4	18	73	8	63	17	32	11	38	1.85
379334--380305	199	4.9	199	97	0	1795	30	16	15	37	1.90
380424--380472	19	2.6	19	93	0	80	57	10	2	30	1.43
382264--382329	33	2.0	33	87	0	96	24	46	0	28	1.52
382363--382427	21	3.1	21	81	0	76	15	30	15	38	1.88
384642--384684	20	2.3	18	85	14	61	20	16	11	51	1.75
384647--384693	20	2.4	19	82	10	67	19	17	10	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384828--384874	20	2.3	20	89	10	78	17	17	10	55	1.69
384614--385086	181	2.6	182	89	1	707	26	17	13	42	1.86
394326--394407	41	2.0	42	82	2	103	28	21	17	32	1.96
394240--394668	196	2.2	197	83	2	531	31	17	18	32	1.94
394583--394955	174	2.1	175	89	1	570	34	14	15	35	1.88
394954--395033	42	1.9	41	84	2	106	23	20	20	36	1.95
395862--396226	82	4.6	82	87	6	552	36	7	5	50	1.53
395891--396196	155	2.0	155	93	0	522	36	6	5	50	1.52
396237--396455	22	10.0	21	74	23	99	36	7	2	53	1.43
396246--397298	14	74.9	14	67	23	166	38	7	2	51	1.45
396229--397148	8	123.9	8	67	24	148	38	7	2	51	1.46
396310--396405	7	13.0	7	74	21	65	37	5	3	54	1.39
396295--396453	43	3.8	42	73	23	122	37	7	2	52	1.44
396377--396573	104	1.9	104	81	12	244	38	9	2	49	1.48
396432--396670	67	3.6	65	77	17	217	36	9	2	51	1.49
396701--397338	2	320.0	2	65	22	181	40	6	2	50	1.42
396281--397309	35	30.1	34	68	23	239	38	7	2	50	1.45
396792--397052	143	1.8	144	80	13	324	39	8	2	50	1.45
397067--397145	25	3.2	25	73	21	78	37	7	2	51	1.44
397361--397400	21	1.9	21	85	10	55	47	2	5	45	1.38
397385--397451	22	3.3	20	80	11	75	49	5	1	43	1.36
400617--400870	68	3.8	68	93	0	411	29	24	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401030--401637	55	11.1	55	85	1	726	27	19	19	33	1.96
401030--401637	109	5.6	110	84	3	746	27	19	19	33	1.96
401047--401637	164	3.6	164	85	2	771	28	19	18	33	1.96
401984--402182	96	2.1	95	92	0	326	26	24	16	33	1.95
408474--408551	29	2.7	29	86	6	113	24	8	19	47	1.78
408471--408565	29	3.3	29	77	5	102	24	8	21	46	1.78
415935--415969	17	2.0	18	88	5	54	17	45	22	14	1.84
415976--416058	29	2.9	29	88	0	130	20	9	24	45	1.80
419731--419870	66	2.1	67	85	2	185	40	15	19	25	1.90
419956--420008	21	2.5	20	80	14	63	24	0	1	73	0.93
432484--432839	134	2.7	132	82	3	410	22	18	32	26	1.97
433172--433334	67	2.5	62	78	15	161	41	15	11	31	1.83
434768--434806	14	2.7	14	84	4	51	0	15	7	76	0.99
434726--434870	47	3.1	47	81	14	167	1	17	8	72	1.17
434744--434872	17	8.1	17	72	23	86	0	17	9	72	1.14
434811--434845	13	2.6	13	90	4	52	2	8	11	77	1.10
434747--434884	47	3.0	47	86	8	176	1	16	8	73	1.16
434843--434903	32	1.9	32	83	12	81	4	16	11	67	1.39
437861--437916	22	2.5	23	82	5	69	57	7	0	35	1.26
438766--438792	2	13.5	2	100	0	54	51	0	0	48	1.00
440168--440215	21	2.3	20	79	10	53	62	0	4	33	1.14
441688--441753	32	2.1	32	85	0	87	22	27	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459271--459685	221	1.9	222	81	3	505	36	10	14	38	1.81
460391--460809	43	9.7	42	80	6	389	33	21	23	21	1.97
460391--460809	86	4.8	86	84	3	479	33	21	23	21	1.97
460391--460772	129	3.0	129	82	4	430	34	21	23	20	1.97
464386--464444	30	2.0	30	89	0	91	40	8	13	37	1.75
464869--464924	28	1.9	30	82	13	73	25	12	10	51	1.71
474429--474477	19	2.5	20	80	16	57	30	0	2	67	1.02
478276--478327	24	2.2	24	82	0	59	50	17	11	21	1.77
478299--478390	24	3.8	24	80	8	107	41	17	16	25	1.89
482987--483062	24	3.2	24	84	3	73	47	18	11	22	1.81
483004--483119	24	4.8	24	88	6	146	41	18	15	25	1.89
483004--483137	48	2.8	48	80	6	130	42	17	14	24	1.88
485566--485602	19	1.9	19	88	0	56	27	24	32	16	1.96
485577--485637	8	7.4	8	78	9	61	26	24	32	16	1.96
490429--490510	41	2.0	41	100	0	164	36	9	17	36	1.82
491423--491457	18	1.9	18	88	0	52	28	17	0	54	1.43
492754--492810	18	3.2	18	89	0	78	15	17	47	19	1.83
495837--495915	40	2.0	39	82	9	97	35	16	18	29	1.93
496049--496081	17	1.9	17	93	0	57	30	24	18	27	1.98
496199--496230	15	2.1	15	94	0	55	28	31	6	34	1.82
497262--497298	2	19.5	2	83	10	51	54	0	0	45	1.00
497315--497352	16	2.4	16	82	4	51	63	0	5	31	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497527--497560	15	2.2	16	89	5	52	58	0	0	41	0.98
497984--498084	36	2.8	37	86	6	134	30	15	14	38	1.88
498545--499047	106	4.9	103	79	7	520	22	20	23	33	1.98
498876--499206	160	2.1	160	94	0	581	21	20	25	32	1.98
499065--499254	105	1.8	105	84	0	263	21	21	23	33	1.98
499708--499873	65	2.6	65	94	0	296	36	12	19	31	1.89
499773--500230	102	4.5	102	93	0	772	36	12	20	29	1.90
499838--500248	37	11.9	37	67	18	251	36	13	21	28	1.91
499996--500155	50	3.2	50	63	7	124	36	13	20	30	1.90
500144--500248	36	2.9	36	92	1	165	38	13	23	24	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18