genome.fa.s8912.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008912.1 Hibiscus syriacus cultivar Beakdansim tig00112215_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3753803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  4  of  18  ( 2121 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
501110--501160	22	2.3	22	96	0	93	25	11	27	35	1.91
501770--501807	20	1.9	20	88	0	58	2	5	7	84	0.86
501784--501836	22	2.4	22	87	0	79	0	15	3	81	0.83
505393--505432	2	20.5	2	89	5	64	55	0	0	45	0.99
505906--505975	36	1.9	37	88	8	108	27	14	15	42	1.86
512862--512891	16	1.9	16	93	6	53	0	20	3	76	0.92
513729--513794	24	2.8	24	72	19	66	28	27	24	19	1.99
517830--517873	23	1.9	23	95	0	79	27	27	29	15	1.96
525481--525512	16	2.0	16	100	0	64	18	6	37	37	1.76
531174--531224	22	2.3	23	90	6	79	23	29	19	27	1.98
532871--532945	23	3.2	23	85	9	98	36	21	14	28	1.93
536380--536442	24	2.7	23	82	5	63	41	17	17	23	1.90
540265--540291	14	1.9	14	100	0	54	22	37	22	18	1.95
540827--540891	2	32.5	2	100	0	130	49	0	0	50	1.00
541082--541158	24	3.2	24	83	3	93	33	16	18	31	1.93
541089--541167	24	3.3	23	83	3	86	36	17	15	30	1.91
543421--543563	65	2.2	65	80	12	161	30	22	18	29	1.97
549374--549454	23	3.7	23	77	8	96	25	23	24	25	2.00
549373--549473	43	2.3	43	81	8	116	26	23	24	24	2.00
549441--549512	20	3.6	20	92	0	126	30	23	23	22	1.99
554409--554462	2	27.0	2	100	0	108	50	0	0	50	1.00
558979--559042	24	2.7	24	77	0	74	42	18	10	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
566625--566691	27	2.5	27	97	0	125	32	11	23	31	1.91
567324--567384	29	2.1	29	93	0	104	45	4	13	36	1.64
570999--571119	59	2.1	59	88	0	179	33	24	16	24	1.96
584940--585139	94	2.2	93	90	3	314	34	14	23	28	1.93
584959--585177	94	2.3	94	88	3	307	34	13	24	27	1.93
585551--585909	20	15.9	20	68	22	117	43	10	21	24	1.84
585548--586119	46	12.4	46	91	0	856	44	9	20	24	1.82
585917--585961	20	2.3	19	81	11	54	44	6	17	31	1.75
601076--601115	21	1.9	21	89	0	62	47	10	12	30	1.74
601103--601144	18	2.2	19	91	8	68	50	4	7	38	1.51
602652--602715	21	3.3	19	75	12	67	53	7	14	25	1.67
602654--602715	18	3.2	18	76	19	54	51	8	14	25	1.69
604712--604750	20	2.0	20	85	10	53	10	30	0	58	1.31
612429--612473	2	22.5	2	100	0	90	48	0	0	51	1.00
622367--622422	21	2.7	21	94	0	94	35	32	12	19	1.89
630029--630053	2	12.5	2	100	0	50	48	0	0	52	1.00
636216--636263	24	2.0	24	87	0	69	8	37	18	35	1.81
649647--649687	20	2.1	20	86	4	57	14	2	7	75	1.12
652891--652966	21	3.6	21	87	0	107	27	27	21	23	1.99
656366--656432	18	3.9	18	84	11	95	11	20	50	16	1.76
656372--656420	5	9.2	5	78	12	53	8	22	53	16	1.69
656410--656442	13	2.5	13	95	0	57	15	21	48	15	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
656392--656453	31	2.0	31	87	0	88	16	22	45	16	1.85
656445--656480	11	3.6	10	89	10	56	33	30	22	13	1.93
663628--663660	13	2.5	13	95	0	57	15	21	48	15	1.81
663663--663717	10	5.6	10	81	10	69	34	27	21	16	1.95
663663--663718	19	2.9	19	82	10	69	33	26	21	17	1.96
665267--665350	9	9.7	9	73	21	63	33	4	3	58	1.36
665269--665351	16	4.9	16	76	13	76	32	4	3	59	1.36
667365--667445	23	3.5	24	96	3	148	28	18	23	29	1.98
667751--667911	9	18.7	9	72	20	89	34	8	3	54	1.45
667777--667923	16	8.7	16	70	15	64	34	6	3	55	1.41
667761--667925	53	3.1	52	89	3	224	35	6	3	55	1.42
673124--673153	14	2.1	15	93	6	53	63	16	0	20	1.31
673685--673721	10	3.9	10	86	13	60	59	0	40	0	0.97
674475--674534	3	20.0	3	89	0	66	66	6	0	26	1.16
674723--675085	134	2.7	134	87	0	476	24	17	31	26	1.97
675282--675413	38	3.8	34	77	13	117	39	12	16	31	1.87
675685--675759	31	2.4	31	84	8	91	37	13	18	30	1.89
675883--676000	61	1.9	61	81	8	141	45	16	11	27	1.80
676100--676195	36	2.6	36	78	3	111	39	12	17	30	1.87
676237--676344	35	3.0	36	80	9	130	37	11	16	35	1.84
679062--679176	51	2.2	52	90	1	178	22	18	23	35	1.95
679932--679980	25	1.9	26	91	4	82	32	24	4	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681080--681106	13	2.1	13	100	0	54	77	0	14	7	0.97
686583--687070	2	247.5	2	69	16	191	43	8	3	44	1.53
686737--686846	49	2.2	48	87	4	148	49	12	5	32	1.64
686917--686994	25	3.2	24	80	8	88	38	5	1	55	1.30
689635--689677	20	2.2	20	86	0	59	55	18	4	20	1.60
692378--692469	45	2.0	45	100	0	184	28	8	10	52	1.66
694673--694710	20	1.9	20	100	0	76	28	10	15	44	1.80
697433--697479	20	2.3	20	85	7	60	36	21	4	38	1.73
697418--697530	50	2.3	50	84	1	147	30	20	10	38	1.86
698010--698076	9	7.2	9	74	17	57	34	5	2	56	1.39
698016--698093	23	3.4	22	73	16	70	35	5	2	56	1.35
698111--698145	18	1.9	18	88	11	54	42	2	0	54	1.15
700659--700743	42	2.0	42	95	0	152	20	22	23	34	1.97
701228--701259	15	2.1	16	88	11	50	68	6	0	25	1.12
702961--703036	31	2.4	31	77	2	80	28	30	26	14	1.95
706376--706402	3	9.0	3	100	0	54	33	0	0	66	0.92
709357--709389	13	2.5	13	100	0	66	48	12	24	15	1.78
711068--711097	15	2.0	15	93	0	51	43	0	6	50	1.28
714788--714844	26	2.2	26	93	0	96	24	26	12	36	1.91
715427--715467	12	3.4	12	100	0	82	17	36	7	39	1.77
717078--717102	13	1.9	13	100	0	50	72	0	16	12	1.13
717205--717236	14	2.2	15	94	5	57	18	28	12	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
718162--718204	6	7.8	5	85	15	50	53	0	2	44	1.13
718168--718198	11	2.8	11	95	0	53	54	0	3	41	1.16
720765--720801	18	2.1	18	89	0	56	56	24	5	13	1.58
724329--724370	20	2.1	20	90	0	66	33	19	9	38	1.84
727085--727132	20	2.4	20	82	6	53	33	25	4	37	1.75
727070--727182	50	2.3	50	87	4	158	30	22	9	38	1.86
727643--727723	14	5.6	14	70	20	51	35	8	2	53	1.45
727714--727752	2	20.0	2	85	15	55	46	2	0	51	1.14
730304--730383	40	2.0	41	95	2	144	20	21	23	35	1.96
732645--732676	15	2.1	16	88	11	50	68	6	0	25	1.12
738266--738292	3	9.0	3	100	0	54	33	0	0	66	0.92
745392--745420	12	2.4	12	100	0	58	17	37	6	37	1.76
747181--747210	14	2.1	14	100	0	60	20	33	13	33	1.91
747639--748392	370	2.0	366	91	6	1154	38	12	11	37	1.79
748317--748397	43	1.9	41	82	5	99	40	13	4	40	1.66
748411--748461	2	26.5	2	82	7	61	50	3	1	43	1.31
748364--748501	57	2.4	58	83	10	160	46	11	3	38	1.58
748503--748537	16	2.2	16	89	0	52	34	5	2	57	1.37
748560--748615	2	29.5	2	79	16	66	51	1	1	44	1.22
748639--748682	15	2.9	15	80	13	54	43	2	0	54	1.12
750954--750996	20	2.2	20	91	0	68	55	20	4	18	1.60
753021--753058	18	2.2	18	85	4	51	50	7	7	34	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
755867--755902	18	2.0	18	94	0	63	30	11	13	44	1.79
758581--758645	34	1.9	34	100	0	130	32	30	29	7	1.85
758728--758817	23	3.8	24	83	4	121	37	20	16	25	1.93
758711--758824	47	2.4	47	82	2	140	40	20	14	25	1.89
759187--759511	162	2.0	163	99	0	643	29	21	11	37	1.88
760121--760156	18	2.0	18	88	0	54	30	16	0	52	1.44
761449--761482	15	2.3	15	100	0	68	23	26	35	14	1.94
761448--761479	7	4.4	7	92	7	55	25	28	34	12	1.92
763347--763421	35	2.1	35	92	0	123	33	29	28	9	1.88
763498--763572	24	3.2	23	84	5	105	36	21	17	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18