genome.fa.s8912.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008912.1 Hibiscus syriacus cultivar Beakdansim tig00112215_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3753803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2121 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3568165--3568344	60	3.0	58	79	13	161	35	17	3	43	1.68
3569210--3569288	26	3.2	26	64	29	64	50	5	2	41	1.38
3569210--3569305	48	2.1	46	83	12	119	53	5	2	39	1.35
3569282--3569316	17	2.1	17	94	0	61	65	2	0	31	1.07
3569379--3569425	14	3.4	14	94	2	78	65	0	0	34	0.93
3571187--3571229	16	2.7	16	88	0	68	60	20	9	9	1.55
3571183--3571235	22	2.5	20	77	16	54	60	18	9	11	1.57
3572301--3572342	14	3.0	14	89	0	57	54	19	14	11	1.70
3575117--3575199	31	2.7	31	90	0	139	55	4	2	37	1.34
3575134--3575186	19	3.2	19	65	34	57	62	3	0	33	1.13
3576485--3576510	2	13.0	2	100	0	52	50	0	0	50	1.00
3583605--3583643	14	2.8	14	92	0	69	20	15	17	46	1.84
3590896--3590943	21	2.2	22	82	10	55	25	10	4	60	1.47
3600039--3600099	31	2.0	31	87	6	88	26	6	11	55	1.59
3604172--3604292	65	1.9	63	83	8	154	30	18	23	28	1.97
3604192--3604347	64	2.4	65	84	5	183	30	18	22	28	1.97
3604235--3604360	64	2.0	64	84	3	164	28	17	23	30	1.97
3604235--3604379	64	2.3	64	81	4	150	28	18	23	28	1.98
3605888--3605928	21	2.0	21	95	0	73	39	9	17	34	1.82
3606966--3607023	20	2.8	21	86	5	73	27	20	29	22	1.99
3606966--3607067	22	4.7	22	79	8	104	28	20	26	24	1.99
3606972--3607087	43	2.7	43	78	13	123	27	20	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3612815--3612925	46	2.4	47	86	5	156	31	16	22	29	1.96
3612870--3612989	64	1.9	64	84	3	161	30	18	19	31	1.95
3619365--3619417	21	2.5	21	84	0	70	20	26	18	33	1.96
3619407--3619517	20	5.6	20	83	4	152	37	19	21	20	1.94
3619407--3619522	39	2.9	41	84	5	155	37	19	20	22	1.95
3619695--3619756	18	3.0	22	72	18	69	25	38	16	19	1.92
3620093--3620181	20	4.5	20	84	1	99	14	14	23	47	1.81
3620146--3620189	20	2.2	20	87	0	61	13	13	20	52	1.74
3622058--3622161	20	5.5	20	78	13	112	38	21	19	21	1.94
3622064--3622182	54	2.2	54	92	0	193	40	21	21	17	1.92
3622206--3622254	20	2.5	20	82	0	62	20	22	24	32	1.98
3622228--3622321	33	2.8	33	75	3	89	13	18	22	45	1.84
3622293--3622337	20	2.2	20	96	0	81	13	17	26	42	1.86
3622825--3622923	21	4.7	21	74	3	83	23	35	19	22	1.96
3622822--3622932	42	2.6	42	75	8	109	21	36	18	23	1.94
3624273--3624322	14	3.6	14	88	0	73	34	0	20	46	1.51
3624424--3624519	33	2.9	34	84	3	122	41	18	23	15	1.89
3624568--3624656	20	4.4	20	82	2	90	16	21	23	38	1.93
3624568--3624658	40	2.3	40	82	3	130	16	20	23	39	1.92
3627077--3627130	24	2.2	24	93	0	90	40	20	18	20	1.91
3627077--3627144	24	2.8	24	84	0	64	38	20	17	23	1.93
3627993--3628118	20	6.2	20	80	10	125	22	19	19	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3627993--3628118	40	3.1	40	84	5	173	22	19	19	38	1.94
3628115--3628160	21	2.2	21	88	0	65	36	17	28	17	1.92
3628396--3628436	22	2.0	21	90	9	66	48	4	0	46	1.23
3628919--3629017	37	2.7	37	93	0	162	23	9	29	38	1.85
3640944--3640987	21	2.1	21	100	0	88	29	29	4	36	1.77
3643367--3643424	30	2.0	29	83	10	73	60	5	6	27	1.44
3644237--3644430	55	3.6	55	83	5	216	27	18	15	39	1.90
3669539--3669586	20	2.4	21	86	10	66	31	0	25	43	1.55
3670473--3670641	91	1.9	88	86	8	245	20	13	35	31	1.90
3670644--3670691	2	24.5	2	95	4	89	52	0	0	47	1.00
3678492--3678526	12	3.0	12	87	4	54	65	8	14	11	1.46
3680715--3680758	23	2.0	21	82	8	52	50	2	34	13	1.55
3681094--3681155	21	3.0	21	100	0	124	4	38	8	48	1.54
3686298--3686363	21	3.3	19	83	10	87	12	37	3	46	1.56
3687913--3687956	22	2.0	23	90	4	72	47	18	0	34	1.49
3690318--3690376	2	29.5	2	100	0	118	50	0	0	49	1.00
3692463--3692546	22	3.8	22	85	3	114	21	26	28	23	1.99
3703634--3703703	20	3.5	20	78	0	77	31	17	7	44	1.75
3708044--3708279	121	1.9	122	92	0	393	36	16	11	35	1.84
3709223--3709247	13	1.9	13	100	0	50	40	12	24	24	1.88
3709859--3709888	2	15.0	2	100	0	60	50	0	0	50	1.00
3714035--3714075	18	2.3	18	91	0	64	34	26	14	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3714040--3714101	30	2.1	30	81	6	72	35	30	12	20	1.91
3719770--3719801	15	2.1	16	94	5	57	6	25	18	50	1.70
3720550--3720583	16	2.1	16	94	0	59	32	26	8	32	1.87
3724922--3724948	12	2.2	12	100	0	54	40	33	0	25	1.56
3729022--3729048	3	9.0	3	100	0	54	33	0	0	66	0.92
3735774--3735805	9	3.4	10	87	12	50	34	0	15	50	1.45
3735984--3736097	2	57.0	2	100	0	228	0	0	50	50	1.00
3736831--3736875	16	2.9	15	80	12	56	31	0	17	51	1.46
3737137--3737198	23	2.7	23	82	0	79	17	25	24	32	1.97
3741307--3741338	9	3.4	10	87	12	50	34	0	15	50	1.45
3741509--3741554	2	23.0	2	90	0	74	45	0	4	50	1.21
3741554--3741583	2	15.0	2	100	0	60	0	0	50	50	1.00
3742602--3742669	23	3.0	23	84	0	91	20	22	22	35	1.96
3742782--3742862	39	2.1	37	80	13	85	30	4	23	40	1.76
3752913--3752956	2	22.0	2	100	0	88	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!