genome.fa.s8912.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008912.1 Hibiscus syriacus cultivar Beakdansim tig00112215_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3753803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  6  of  18  ( 2121 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
916714--916788	21	3.5	21	80	3	87	49	12	4	34	1.59
916660--916784	10	12.0	10	66	17	67	46	12	4	37	1.60
916754--916837	37	2.3	37	79	8	91	45	11	3	39	1.58
916827--916862	16	2.2	16	90	0	54	36	5	2	55	1.38
916834--916869	16	2.2	16	90	0	54	36	2	2	58	1.27
916888--916932	11	4.0	12	83	11	51	53	2	2	42	1.25
916955--916998	15	2.9	15	80	13	54	43	2	0	54	1.12
919496--919538	20	2.2	20	91	0	68	55	20	4	18	1.60
924488--924529	20	2.1	20	90	0	66	33	19	9	38	1.84
927125--927165	20	2.0	20	86	9	57	31	14	19	34	1.92
927207--927254	20	2.4	20	82	6	53	33	22	6	37	1.80
927192--927304	50	2.3	50	87	1	156	29	19	11	39	1.87
927760--927871	31	3.8	30	78	13	108	37	7	1	53	1.39
927790--927849	9	6.6	9	75	17	52	33	5	3	58	1.36
927770--927871	37	2.7	38	78	15	113	37	5	1	54	1.36
934582--934635	24	2.2	24	86	0	72	24	14	16	44	1.85
934582--934651	24	2.9	24	82	0	68	22	12	15	48	1.79
934830--934861	16	2.0	16	93	0	55	46	0	6	46	1.27
939204--939232	12	2.4	12	100	0	58	24	37	0	37	1.56
939396--939451	30	1.9	29	82	7	69	33	1	10	53	1.46
941824--942121	2	155.0	2	65	21	86	45	8	3	43	1.48
941775--941861	43	2.1	41	82	4	102	41	13	3	41	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
941824--941978	57	2.7	56	81	15	144	45	11	3	39	1.57
941824--941929	57	1.9	55	86	5	151	48	11	2	37	1.54
942030--942109	31	2.6	32	79	14	87	46	2	3	47	1.34
944605--944647	20	2.2	20	86	0	59	53	20	6	18	1.67
946299--946323	12	2.1	12	100	0	50	40	8	0	52	1.31
946695--946738	19	2.4	19	85	7	56	47	6	4	40	1.50
949189--949244	20	2.8	20	78	2	60	37	17	5	39	1.73
949942--950168	113	2.0	113	100	0	454	44	9	10	35	1.72
952090--952137	20	2.4	20	85	0	60	29	22	10	37	1.88
952077--952188	50	2.3	49	87	1	161	26	21	13	38	1.90
952653--952728	8	9.6	8	80	13	68	38	6	2	52	1.41
952653--952834	16	12.3	15	68	18	80	39	7	3	50	1.46
952724--952773	23	2.2	22	89	6	82	34	6	4	56	1.43
952730--952831	23	4.5	23	72	14	68	39	7	3	49	1.51
957896--957925	14	2.1	15	93	6	53	63	16	0	20	1.31
958457--958494	10	4.0	10	80	13	53	55	0	42	2	1.14
959384--959426	3	14.3	3	85	0	59	65	2	0	32	1.06
959956--960025	32	2.2	33	86	2	97	35	12	14	37	1.84
960358--960432	31	2.4	32	86	4	100	40	13	16	30	1.86
960613--960645	15	2.2	15	94	0	57	48	21	15	15	1.81
960853--960955	36	2.8	36	75	4	109	37	11	16	33	1.85
960971--961097	35	3.5	37	82	8	161	37	12	16	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
961430--961476	4	12.2	4	80	8	53	29	0	21	48	1.50
961422--961461	18	2.2	19	90	4	64	32	0	15	52	1.43
964260--964285	12	2.2	12	100	0	52	76	0	15	7	0.99
969732--969862	12	10.7	12	74	8	93	38	11	6	43	1.66
969807--969906	26	3.8	26	71	16	71	48	13	3	36	1.57
969841--969940	44	2.2	46	82	8	125	48	13	5	34	1.64
970064--970359	2	151.5	2	68	16	86	45	8	3	42	1.53
970068--970178	49	2.2	48	87	4	150	49	12	5	32	1.63
970188--970309	15	7.8	16	73	16	78	42	4	1	50	1.33
970206--970283	25	3.2	24	80	8	88	38	5	1	55	1.30
975924--975972	25	2.0	24	88	4	71	18	22	22	36	1.95
985861--985964	45	2.3	46	78	8	115	31	20	17	30	1.95
988487--988516	3	10.0	3	100	0	60	33	0	0	66	0.92
992988--993041	24	2.2	24	87	6	74	27	11	16	44	1.82
995541--995605	24	2.7	24	85	0	85	26	10	15	47	1.78
996260--996314	30	1.9	28	82	10	67	34	0	10	54	1.36
997750--997775	12	2.2	12	100	0	52	76	0	15	7	0.99
998639--998769	43	3.1	42	80	7	131	44	12	3	39	1.60
998650--998769	13	8.5	14	69	15	61	46	12	3	37	1.58
998703--998777	21	3.5	21	80	3	87	49	12	4	34	1.59
998649--998773	10	12.0	10	67	17	67	46	12	3	37	1.58
998743--998826	37	2.3	37	79	8	91	45	11	3	39	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
998816--998851	16	2.2	16	90	0	54	36	5	2	55	1.38
998823--998858	16	2.2	16	90	0	54	36	2	2	58	1.27
998876--999005	2	69.0	2	74	19	93	44	2	4	48	1.36
998870--998957	33	2.8	32	83	8	99	47	2	2	47	1.27
998784--999005	22	9.8	22	67	19	73	42	4	3	48	1.42
1001564--1001606	20	2.2	20	91	0	68	55	20	4	18	1.60
1007871--1007916	19	2.4	19	85	3	56	32	13	2	52	1.52
1008778--1008844	34	2.0	34	87	0	98	23	28	16	31	1.96
1009289--1009336	20	2.4	20	78	0	51	33	20	8	37	1.83
1009292--1009386	50	1.9	49	89	2	145	29	20	12	37	1.89
1009783--1009858	9	8.6	9	75	18	61	32	3	3	59	1.34
1009779--1009835	16	3.6	16	80	13	64	36	1	3	57	1.26
1009783--1009835	25	2.2	23	86	6	70	35	1	3	58	1.27
1009790--1009857	16	3.9	16	73	17	55	30	4	4	60	1.36
1009817--1009875	23	2.5	22	76	10	64	33	6	1	57	1.35
1009761--1009876	53	2.1	54	81	9	139	36	5	2	56	1.36
1016814--1016944	10	12.6	10	68	18	72	45	11	4	38	1.61
1016815--1016946	8	15.1	8	68	17	59	45	12	4	37	1.62
1016971--1017116	2	76.5	2	69	23	84	45	4	0	49	1.28
1018594--1018877	43	6.6	43	84	1	354	21	24	20	34	1.96
1020080--1020278	43	4.6	43	82	0	227	18	23	22	36	1.95
1021717--1021755	19	2.1	19	85	0	51	43	5	5	46	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1024998--1025067	3	23.0	3	75	13	54	55	0	4	40	1.19
1024988--1025071	37	2.3	37	83	8	100	53	0	4	41	1.22
1025311--1025355	20	2.2	20	88	0	63	33	24	17	24	1.96
1025311--1025364	20	2.7	20	85	0	54	33	20	18	27	1.96
1025232--1025587	119	3.0	119	92	1	563	34	18	15	31	1.92
1025430--1025483	20	2.7	20	85	0	63	29	22	22	25	1.99
1025549--1025589	20	2.0	20	85	0	55	31	21	21	24	1.98
1037148--1037191	23	1.9	23	95	0	79	43	27	4	25	1.74
1037149--1037192	11	3.9	11	79	5	52	40	27	4	27	1.75
1037437--1037527	14	6.4	14	71	9	69	59	4	15	20	1.53
1037737--1037794	28	2.0	28	90	9	91	29	3	29	37	1.74
1042695--1042721	9	3.0	9	100	0	54	55	22	11	11	1.66
1050358--1050412	21	2.6	21	94	0	92	25	27	14	32	1.95
1059354--1059582	57	4.0	57	87	0	296	35	29	19	15	1.92
1061828--1061880	18	2.9	18	75	10	63	16	15	47	20	1.83
1063140--1063227	40	2.2	40	95	0	158	43	18	14	23	1.87
1063159--1063245	40	2.2	40	89	0	129	45	16	14	22	1.84
1065018--1065132	37	3.1	37	81	2	124	40	16	19	23	1.90
1065067--1065149	37	2.2	37	80	4	96	38	20	18	22	1.93
1065179--1065288	36	3.1	36	87	0	157	38	20	20	21	1.94
1065355--1065501	36	4.1	36	88	1	222	38	19	18	23	1.93
1065357--1065501	73	2.0	73	90	0	227	39	18	18	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1066099--1066569	53	8.9	53	90	0	717	31	20	27	20	1.98
1066894--1066951	23	2.6	23	86	2	73	20	39	25	13	1.90
1066901--1066951	23	2.3	22	93	3	84	19	39	27	13	1.90
1073647--1073675	12	2.5	12	94	5	51	27	0	10	62	1.28
1073595--1073809	76	2.9	73	78	10	224	26	5	13	53	1.61
1073600--1073809	75	2.9	75	78	10	236	27	5	13	53	1.62
1077027--1077074	15	3.3	14	80	14	53	79	2	6	12	1.01
1077965--1078013	17	3.0	16	85	11	64	75	0	2	22	0.90
1083121--1083213	29	3.1	29	72	6	80	29	20	18	32	1.96
1083464--1083565	32	3.2	32	74	0	105	26	22	16	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18