genome.fa.s9344.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009344.1 Hibiscus syriacus cultivar Beakdansim tig00113124_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4287485

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  13  of  24  ( 2784 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2237554--2237630	14	5.5	14	83	6	102	79	0	20	0	0.74
2238638--2238950	114	2.7	114	93	1	511	32	15	20	31	1.94
2240783--2241002	54	4.1	54	95	1	370	37	16	23	22	1.94
2241363--2241440	22	3.5	22	84	3	111	34	14	12	38	1.84
2241839--2242839	113	9.0	113	89	4	1309	39	14	17	28	1.89
2243077--2243125	24	2.0	24	84	7	64	42	0	0	57	0.99
2244603--2244647	22	2.0	22	86	8	63	42	0	0	57	0.98
2246650--2246705	24	2.3	24	96	0	103	64	7	16	12	1.48
2250522--2250578	28	2.0	28	89	0	87	38	22	10	28	1.87
2251228--2251265	3	12.7	3	100	0	76	0	34	0	65	0.93
2259430--2259800	188	2.0	186	98	1	715	33	9	26	29	1.88
2265187--2265220	17	2.1	17	94	5	61	38	0	17	44	1.49
2268712--2268757	22	2.0	23	95	4	85	17	17	26	39	1.91
2272763--2272819	28	2.0	28	100	0	114	28	7	19	45	1.76
2274158--2274186	10	2.9	10	100	0	58	41	27	0	31	1.56
2274910--2274979	36	1.9	37	88	2	106	28	11	27	32	1.91
2277239--2277265	2	13.5	2	100	0	54	48	0	0	51	1.00
2278268--2278296	5	5.8	5	100	0	58	0	20	20	58	1.39
2282053--2282121	29	2.6	25	76	17	66	37	0	0	62	0.96
2282738--2282771	10	3.6	10	84	15	54	5	0	41	52	1.25
2282737--2282777	18	2.3	18	95	0	73	4	0	39	56	1.21
2283850--2284076	124	1.8	124	84	3	314	37	9	9	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2286221--2286274	14	3.8	14	82	4	63	24	14	9	51	1.71
2289800--2289867	4	16.8	4	73	19	52	79	4	14	1	0.96
2289793--2289846	26	2.0	27	96	3	101	70	11	14	3	1.29
2289830--2289888	21	2.9	19	85	14	82	84	0	15	0	0.62
2289830--2289889	13	4.3	14	79	16	63	83	0	16	0	0.65
2289826--2289888	31	2.0	31	87	6	92	84	0	15	0	0.63
2289826--2289886	23	2.7	23	87	10	81	83	0	16	0	0.64
2289826--2289889	12	5.4	11	85	14	83	82	0	17	0	0.66
2294902--2296134	112	10.9	113	85	3	1528	38	14	18	28	1.91
2294902--2296134	449	2.7	447	88	3	1726	38	14	18	28	1.91
2296439--2296490	3	17.7	3	80	4	52	38	0	0	61	0.96
2297557--2297782	124	1.8	123	82	0	290	37	8	9	44	1.68
2302499--2302606	40	2.7	40	78	7	94	37	19	16	26	1.93
2302551--2302767	41	5.4	41	70	11	146	32	19	18	29	1.96
2302573--2302806	120	2.0	117	89	4	362	32	17	19	30	1.95
2302874--2303002	41	3.1	42	67	14	115	33	18	15	32	1.92
2305220--2305280	23	2.7	23	89	0	95	26	27	26	19	1.99
2305296--2305616	103	3.1	103	98	0	606	36	23	13	26	1.92
2306800--2306843	21	2.1	21	86	0	61	15	27	27	29	1.96
2312086--2312142	30	1.9	30	88	0	87	10	24	24	40	1.87
2317412--2317479	29	2.3	28	80	9	82	67	1	25	5	1.21
2317749--2317933	21	8.9	20	70	8	84	28	21	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2317923--2318034	20	5.6	20	81	4	127	37	19	20	22	1.94
2317787--2318042	41	6.3	41	70	12	152	33	19	18	28	1.96
2318613--2318725	20	6.1	19	75	13	101	13	23	20	42	1.87
2322278--2322313	14	2.6	14	95	0	63	30	0	25	44	1.54
2322420--2322537	19	6.7	19	72	20	96	46	19	19	14	1.84
2322420--2322513	33	2.8	33	95	0	161	45	19	20	14	1.85
2322502--2322547	19	2.4	19	92	0	74	45	23	15	15	1.84
2322552--2322673	19	7.2	18	67	25	88	13	23	18	45	1.84
2322547--2322673	33	3.8	33	95	0	218	13	23	18	44	1.85
2322568--2322655	14	5.6	14	69	23	50	12	23	19	44	1.85
2325199--2325252	24	2.2	24	90	0	81	40	20	16	22	1.91
2326624--2326682	20	3.0	20	87	0	73	44	22	18	15	1.87
2326945--2326988	22	2.0	22	95	0	79	18	15	45	20	1.85
2327181--2327223	20	2.2	20	86	0	59	30	9	27	32	1.88
2327238--2327310	21	3.5	21	84	1	85	21	24	15	38	1.92
2327387--2327432	19	2.3	20	81	7	58	26	17	28	28	1.98
2335617--2335824	105	2.0	104	96	1	382	36	9	19	35	1.84
2339604--2339693	29	3.0	29	77	15	85	55	10	8	25	1.62
2340239--2340279	21	2.0	21	95	0	73	19	21	17	41	1.90
2340241--2340286	21	2.2	21	84	0	56	23	23	19	32	1.97
2340271--2340383	40	2.8	40	84	9	133	42	23	15	19	1.88
2340306--2340404	21	4.8	20	82	4	92	39	23	17	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2340350--2340423	21	3.6	21	92	5	125	35	24	14	25	1.94
2340350--2340443	21	4.7	19	92	4	107	34	23	14	27	1.94
2341233--2341266	12	2.8	12	90	0	50	55	29	0	14	1.40
2343698--2343733	18	2.0	18	94	0	63	55	25	2	16	1.55
2344015--2344057	20	2.2	20	95	0	77	48	20	13	16	1.80
2344079--2344133	20	2.7	20	88	11	76	18	21	21	38	1.94
2344194--2344243	25	2.0	25	96	0	91	26	8	22	44	1.80
2345403--2345523	64	1.9	64	100	0	242	15	14	21	47	1.81
2345563--2345612	20	2.5	20	86	0	73	44	22	18	16	1.87
2345764--2345903	66	2.2	64	90	2	217	52	17	2	28	1.56
2347104--2347165	22	2.7	23	82	2	90	29	27	27	16	1.97
2347350--2347498	64	2.3	64	95	3	264	26	20	12	39	1.89
2349848--2349885	20	1.9	20	100	0	76	10	31	34	23	1.89
2352368--2352466	21	4.7	21	76	8	103	21	18	35	25	1.95
2352368--2352470	42	2.5	42	82	6	145	21	17	35	25	1.95
2352489--2352688	100	2.0	100	100	0	400	29	24	31	16	1.96
2353448--2353554	24	4.5	24	75	0	106	47	16	14	20	1.82
2353448--2353556	48	2.3	48	78	0	128	47	16	15	20	1.82
2355998--2356030	14	2.3	15	94	5	59	24	27	33	15	1.95
2356011--2356072	28	2.4	24	82	17	72	17	24	41	16	1.89
2356020--2356085	18	4.1	17	70	25	63	13	21	46	18	1.83
2356090--2356135	9	4.9	9	79	10	56	34	32	19	13	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2358014--2358054	2	21.5	2	90	9	68	53	0	0	46	1.00
2358014--2358054	13	3.2	13	96	3	75	53	0	0	46	1.00
2358214--2358321	48	2.3	48	78	1	128	47	16	15	20	1.83
2360757--2360840	17	5.3	17	76	23	94	10	22	48	17	1.78
2361871--2361920	21	2.4	21	86	0	73	36	28	14	22	1.92
2364208--2364289	20	4.1	20	88	3	121	15	14	25	43	1.85
2364214--2364300	20	4.3	20	84	8	115	17	13	26	42	1.86
2364215--2364326	40	2.8	40	81	12	124	18	14	25	41	1.88
2364977--2365054	31	2.5	31	97	0	147	16	11	24	47	1.80
2365077--2365108	14	2.3	14	94	0	55	56	18	15	9	1.66
2365282--2365319	16	2.4	17	86	8	53	36	0	5	57	1.21
2365409--2365438	10	3.0	10	90	0	51	56	20	13	10	1.65
2365664--2365700	2	18.5	2	100	0	74	51	0	0	48	1.00
2366019--2366448	218	2.0	211	94	3	761	36	9	22	32	1.85
2366904--2367069	83	2.0	83	100	0	332	32	24	20	22	1.98
2367778--2367848	22	3.3	22	69	15	76	40	7	5	46	1.54
2367777--2367861	42	2.0	42	100	0	170	43	7	7	42	1.59
2368284--2368328	23	2.0	23	86	0	63	46	13	22	17	1.83
2368601--2368638	17	2.2	18	85	4	51	31	0	2	65	1.06
2368652--2368709	26	2.3	26	82	11	75	25	5	3	65	1.29
2370425--2370508	34	2.5	34	96	0	150	58	0	1	40	1.06
2370445--2370498	9	6.2	9	77	12	51	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2377057--2377081	13	1.9	13	100	0	50	44	16	0	40	1.47
2380762--2380796	13	2.6	14	90	4	54	40	0	5	54	1.24
2386956--2386990	2	17.5	2	100	0	70	51	0	0	48	1.00
2387359--2387417	23	2.6	23	88	0	82	13	37	23	25	1.92
2387406--2387459	20	2.7	20	91	0	90	11	25	37	25	1.89
2387446--2387473	14	2.0	14	100	0	56	7	28	42	21	1.79
2387406--2387459	10	5.4	10	77	16	58	11	25	37	25	1.89
2387772--2387853	29	2.8	28	94	3	137	17	34	32	15	1.91
2388007--2388062	15	3.6	15	79	9	67	42	12	12	32	1.80
2388010--2388060	17	3.1	17	77	11	61	43	11	9	35	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24