Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009344.1 Hibiscus syriacus cultivar Beakdansim tig00113124_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4287485

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  24  of  24  ( 2784 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4266007--4266054
24
2.0
24
100
0
96
20
8
41
29
1.81
4266154--4266204
22
2.3
22
83
6
59
52
1
3
41
1.31
4266673--4266737
24
2.6
25
85
4
87
35
4
4
55
1.41
4267808--4267888
3
27.0
3
94
0
144
33
2
0
64
1.07
4269234--4269273
18
2.2
19
86
4
55
35
2
2
60
1.24
4269974--4270024
18
2.9
17
72
18
50
25
0
1
72
0.95
4270014--4270051
15
2.8
13
88
11
51
23
5
2
68
1.23
4280605--4280653
12
4.3
11
87
7
62
81
0
18
0
0.69
4280605--4280653
23
2.1
23
84
0
62
81
0
18
0
0.69
4280608--4280652
14
3.4
14
87
6
58
84
0
15
0
0.62
4280961--4281000
16
2.5
16
88
8
55
30
7
7
55
1.56
4281801--4282098
83
3.6
83
95
0
515
29
13
21
35
1.92
4282050--4282154
52
2.0
52
96
3
194
22
17
24
35
1.95
4281884--4282325
219
2.0
218
95
1
787
27
14
22
35
1.93
4282102--4282553
83
5.4
83
95
0
762
27
13
22
36
1.92
4281801--4282408
302
2.0
301
94
0
1063
28
13
21
35
1.92
4283110--4283888
113
7.0
113
95
2
1314
38
15
19
27
1.91
4284200--4284282
3
28.7
3
87
7
127
33
2
0
63
1.07
4284201--4284282
23
3.6
23
90
6
123
34
2
0
63
1.08
4284199--4284280
20
4.1
20
90
4
130
34
2
0
63
1.08
4285265--4285321
29
2.0
29
82
6
71
26
10
5
57
1.53
4286493--4286651
50
3.1
51
83
13
211
47
12
13
26
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4287307--4287447
21
6.8
20
69
7
75
35
25
17
21
1.95
4287415--4287484
20
3.5
20
84
7
72
40
27
18
14
1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24

The End!