genome.fa.s9344.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009344.1 Hibiscus syriacus cultivar Beakdansim tig00113124_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4287485

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  3  of  24  ( 2784 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415830--415983	19	8.6	19	73	14	130	44	23	20	11	1.83
415905--415961	14	3.7	14	75	20	51	43	22	22	10	1.84
415848--415978	33	3.8	33	87	5	172	45	22	21	9	1.81
415847--415983	52	2.6	51	71	7	132	45	22	21	10	1.82
415995--416053	14	3.9	14	76	20	64	6	16	28	47	1.72
415979--416102	33	3.7	33	91	1	185	8	17	27	45	1.78
415979--416070	19	5.4	18	72	24	83	7	17	28	46	1.75
416028--416084	14	3.7	14	72	20	51	8	22	24	43	1.81
418064--418120	14	3.7	14	75	20	60	8	24	22	43	1.81
418050--418128	33	2.4	33	97	0	149	10	22	18	48	1.78
418075--418172	21	5.2	19	72	18	89	12	23	17	46	1.81
418105--418181	21	3.7	21	82	6	111	12	23	16	46	1.82
418711--418903	20	9.6	20	84	5	228	19	18	27	34	1.95
426782--426845	22	2.9	22	85	2	83	25	0	21	53	1.46
427652--427745	27	3.5	27	86	0	125	30	13	28	26	1.94
427832--427869	18	2.1	18	100	0	76	15	10	42	31	1.81
432119--432174	2	28.0	2	100	0	112	50	0	0	50	1.00
432678--432725	25	1.9	25	86	0	69	37	4	10	47	1.57
432939--432991	25	2.1	25	86	6	72	41	5	1	50	1.36
432974--433022	21	2.4	20	80	6	53	30	2	4	63	1.24
433004--433069	31	2.1	33	86	11	93	33	0	0	66	0.92
433003--433077	33	2.3	33	86	11	109	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433571--433619	23	2.1	23	88	0	71	61	18	10	10	1.55
433601--433639	20	1.9	21	84	5	53	51	15	15	17	1.77
436544--436603	22	2.7	22	78	0	66	38	15	26	20	1.91
437662--437720	9	6.3	9	75	7	55	16	27	28	27	1.97
437661--437718	19	3.1	19	90	5	82	18	24	29	27	1.98
437716--437762	22	2.1	22	88	0	67	21	38	25	14	1.92
444978--445042	22	3.0	22	93	0	112	21	49	20	9	1.76
446639--446705	15	4.5	15	90	3	100	35	5	19	38	1.76
447041--447103	23	2.7	23	80	5	63	46	1	1	50	1.20
447079--447131	20	2.7	20	75	16	56	49	1	0	49	1.12
447176--447255	31	2.5	33	78	17	89	50	0	1	48	1.08
447205--447248	22	2.0	23	86	4	63	54	0	0	45	0.99
447159--447262	54	2.0	52	81	11	122	51	0	0	46	1.13
447440--447559	42	2.9	42	92	0	195	45	15	19	19	1.85
448735--448788	13	4.2	13	78	7	56	77	9	0	12	0.98
448735--448782	25	1.9	25	91	0	78	77	10	0	12	1.00
448746--448823	25	3.1	26	80	17	85	74	12	0	12	1.08
449379--450024	103	6.4	103	77	8	526	36	4	25	33	1.77
449409--449887	202	2.4	202	82	7	541	35	3	25	34	1.75
450343--450464	34	3.6	36	86	9	161	44	8	0	47	1.33
450364--450498	24	5.8	24	71	22	83	44	5	2	47	1.39
450375--450464	17	5.3	17	72	19	89	46	6	0	46	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450381--450464	10	7.6	10	70	19	51	47	7	0	45	1.30
450504--450546	12	3.4	12	81	12	50	48	9	0	41	1.35
450581--450668	44	2.0	45	88	4	133	37	0	17	45	1.48
450635--450798	81	2.1	78	85	7	215	39	0	10	49	1.43
450744--450882	7	20.9	7	69	19	66	41	1	8	48	1.43
450648--450942	11	26.9	11	67	21	97	40	2	8	48	1.49
450734--450930	9	22.8	9	64	28	56	40	3	9	47	1.51
450903--450948	22	2.2	21	88	7	67	39	4	4	52	1.41
459426--459460	2	17.5	2	100	0	70	51	0	0	48	1.00
459444--459952	37	13.6	37	85	6	613	44	3	9	42	1.54
459444--459952	38	13.6	38	85	4	630	44	3	9	42	1.54
459658--459714	12	4.7	12	70	12	53	47	1	8	42	1.45
459444--459952	113	4.5	112	86	6	658	44	3	9	42	1.54
459936--459968	17	2.0	17	88	5	50	39	0	6	54	1.25
459966--460002	15	2.6	14	91	4	56	29	2	0	67	1.04
459966--460003	14	2.6	15	91	4	60	28	2	0	68	1.03
459979--460046	35	1.9	36	84	3	93	17	5	1	75	1.08
460871--460911	22	1.9	21	85	14	57	24	2	2	70	1.11
466194--466219	11	2.4	11	100	0	52	46	0	0	53	1.00
468066--468155	21	4.2	22	71	17	64	48	0	3	47	1.18
468077--468160	23	3.9	22	76	19	79	47	0	2	50	1.14
468077--468152	21	3.7	20	74	13	73	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
468154--468275	50	2.5	49	81	9	133	45	1	0	51	1.16
468317--468362	21	2.2	20	88	3	65	50	0	2	47	1.13
468601--468683	42	2.0	42	81	9	98	56	7	7	28	1.53
470358--470479	10	11.8	10	67	26	51	25	3	0	70	1.08
470352--470438	17	4.9	17	79	18	81	26	2	0	71	0.98
470329--470479	54	2.6	58	80	14	147	27	3	1	68	1.13
470356--470454	18	5.4	17	73	18	67	24	4	1	70	1.10
470390--470531	51	2.8	51	74	21	131	30	2	1	65	1.15
470631--470676	10	4.3	11	84	10	51	47	0	0	52	1.00
470668--470715	19	2.6	19	93	3	80	35	0	10	54	1.35
470908--470958	19	2.6	19	75	6	57	19	3	1	74	1.07
481395--481420	10	2.6	10	100	0	52	92	0	7	0	0.39
484228--484262	2	17.5	2	100	0	70	48	0	0	51	1.00
484425--484510	16	5.7	16	69	22	53	32	1	1	65	1.08
484389--484502	53	2.1	53	82	10	135	27	3	1	67	1.17
490679--490978	54	5.5	54	79	5	307	25	26	22	26	2.00
490686--490778	27	3.4	27	70	14	91	23	29	21	25	1.99
490682--490978	109	2.7	110	83	3	330	25	26	21	26	2.00
491968--492030	30	2.1	30	100	0	126	25	12	14	47	1.79
498918--498954	2	18.5	2	100	0	74	51	0	0	48	1.00
499089--499148	16	3.8	16	73	13	52	46	26	16	10	1.78
499114--499148	16	2.2	16	90	5	54	51	22	14	11	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499772--499847	21	3.7	20	77	11	82	2	39	19	38	1.66
499761--499853	21	4.6	18	74	19	69	3	37	18	40	1.67
500845--500916	29	2.4	31	84	11	89	33	5	8	52	1.55
501023--501090	29	2.3	30	76	5	75	57	4	8	29	1.49
503422--503603	43	4.2	44	72	12	151	36	11	14	37	1.82
503418--503589	88	2.0	87	82	10	208	38	11	13	37	1.80
503439--503625	43	4.3	41	71	12	124	38	10	13	37	1.79
503799--503947	53	2.7	54	79	11	135	39	6	10	42	1.66
503983--504088	37	2.9	36	76	9	108	38	4	9	47	1.57
504140--504372	38	5.9	38	77	13	181	37	6	11	44	1.66
504147--504249	48	2.1	49	87	3	147	41	8	11	37	1.73
504200--504375	73	2.4	73	87	7	239	35	6	11	46	1.65
504200--504375	38	4.7	36	88	4	219	35	6	11	46	1.65
505319--505355	14	2.6	14	100	0	74	48	5	29	16	1.68
508082--508175	25	3.6	25	71	22	68	37	3	2	57	1.27
508089--508175	14	6.6	13	70	15	63	36	3	2	57	1.28
511135--511177	23	1.9	22	85	4	59	39	4	9	46	1.57
511170--511227	17	3.5	17	69	21	59	46	6	5	41	1.53
511163--511306	33	4.3	33	75	18	143	45	6	5	43	1.52
511089--511306	102	2.1	101	80	11	232	43	6	5	44	1.54
511103--511263	86	1.9	82	81	14	193	43	6	6	42	1.58
511341--511412	2	33.0	2	76	15	54	43	2	5	48	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511321--511407	25	3.5	26	75	17	80	42	3	6	47	1.47
511340--511407	23	2.8	25	84	8	79	42	2	5	48	1.42
511370--511502	57	2.3	56	82	6	160	45	6	7	40	1.59
511368--511520	33	5.1	31	73	12	108	44	7	7	40	1.61
511460--511528	33	2.2	32	87	10	97	40	7	8	43	1.63
511499--511570	18	3.7	18	76	20	81	38	8	9	43	1.68
511618--511683	32	2.1	32	91	0	105	53	4	3	39	1.37
511631--511694	25	2.7	23	79	13	76	56	1	3	39	1.25
511632--511730	27	3.7	26	78	10	94	53	1	5	40	1.30
511761--511808	23	2.2	23	85	7	64	50	2	0	47	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24