genome.fa.s9344.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009344.1 Hibiscus syriacus cultivar Beakdansim tig00113124_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4287485

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  2  of  24  ( 2784 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161776--161838	29	2.1	29	88	2	90	28	20	12	38	1.89
161852--161978	51	2.5	51	84	2	148	16	32	29	21	1.95
166344--166380	18	2.1	18	100	0	74	21	21	29	27	1.99
167888--168108	110	2.0	111	93	0	381	44	9	8	36	1.69
169567--169602	2	18.0	2	100	0	72	50	0	0	50	1.00
170272--170314	22	2.0	22	85	0	59	51	9	0	39	1.34
171165--171190	9	2.9	9	100	0	52	23	0	0	76	0.78
179371--179488	60	1.9	60	83	6	148	23	32	27	16	1.96
182613--182713	35	2.8	36	76	7	107	27	19	19	32	1.97
184729--184758	11	2.7	11	100	0	60	26	6	0	66	1.16
194387--194456	34	2.0	35	91	2	115	45	1	7	45	1.39
194610--194670	20	3.1	19	79	13	61	55	0	4	39	1.21
202951--202990	19	2.1	19	100	0	80	37	10	27	25	1.88
204423--204532	29	3.8	29	90	2	168	20	20	15	43	1.87
204909--205065	64	2.5	64	76	14	153	27	18	20	33	1.96
210363--210396	15	2.3	15	89	0	50	35	32	17	14	1.91
210481--210583	29	3.6	29	94	1	181	19	20	16	43	1.88
210967--211123	64	2.5	64	78	10	169	28	18	18	34	1.95
213457--213824	131	2.8	131	86	0	502	39	16	11	32	1.84
213859--213915	23	2.4	25	75	21	61	17	14	10	57	1.64
221880--221972	34	2.8	33	85	6	127	24	12	22	39	1.89
226074--226148	29	2.6	29	91	2	116	22	1	37	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227615--227658	20	2.2	20	84	12	54	47	2	13	36	1.56
227735--227891	65	2.4	65	81	10	169	46	7	3	43	1.46
228302--228374	27	2.7	27	95	2	130	23	28	27	20	1.99
236941--237001	32	1.9	31	93	3	104	49	18	9	22	1.77
240812--240847	9	3.9	9	85	7	54	11	2	8	77	1.08
240734--240973	102	2.3	105	83	11	296	37	5	8	47	1.59
240916--240964	17	2.7	19	81	12	68	18	4	8	69	1.30
242665--242705	15	2.8	15	88	3	57	41	26	7	24	1.81
250492--250543	21	2.4	22	81	9	63	50	1	19	28	1.58
250652--250965	62	5.0	61	71	16	196	46	8	2	42	1.48
256990--257029	17	2.5	16	88	8	55	67	0	2	30	1.04
257759--257808	2	25.0	2	100	0	100	50	0	0	50	1.00
263809--263847	3	13.0	3	84	10	53	33	0	2	64	1.08
263816--263847	14	2.4	13	94	5	55	34	0	0	65	0.93
263811--263846	17	2.1	18	89	5	56	33	0	2	63	1.08
265228--265464	29	8.1	29	70	13	146	21	13	7	57	1.60
266044--266099	18	3.1	18	82	10	60	46	1	5	46	1.36
266783--266931	64	2.3	64	85	4	194	42	18	12	27	1.85
266815--266919	32	3.3	32	94	0	192	42	17	11	28	1.83
266815--266951	64	2.1	64	86	0	193	41	18	10	28	1.85
266912--266984	32	2.3	31	79	11	76	41	26	10	21	1.86
267319--267378	17	3.4	18	80	13	72	30	3	1	65	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269541--269595	22	2.5	22	85	2	76	25	14	12	47	1.80
270261--270318	13	4.5	13	88	0	80	27	18	18	34	1.95
270269--270325	13	4.4	13	86	0	69	28	17	15	38	1.91
270462--270519	2	29.5	2	96	3	109	50	0	0	50	1.00
274930--275087	63	2.5	64	81	9	180	33	22	18	25	1.97
279185--279230	19	2.4	19	92	0	74	28	4	32	34	1.77
282200--282272	30	2.4	30	95	0	128	53	0	0	46	1.00
282260--282360	22	4.5	22	73	7	94	38	0	8	52	1.33
282198--282315	15	7.5	15	80	13	112	46	0	2	50	1.14
282295--282391	32	3.4	31	72	27	113	35	0	10	54	1.34
282295--282647	54	6.4	54	76	18	336	35	0	11	52	1.37
282363--282410	22	2.4	18	73	23	51	33	0	14	52	1.42
282419--282647	32	8.0	31	73	23	209	36	0	10	52	1.37
282452--282494	22	2.0	22	100	0	86	39	0	9	51	1.34
282483--282535	14	3.5	14	72	18	52	37	0	5	56	1.23
282340--282616	86	3.2	85	89	7	406	35	0	11	52	1.39
282538--282580	22	2.0	22	95	0	77	37	0	11	51	1.39
282663--282721	31	1.9	31	92	0	100	42	10	6	40	1.65
285455--285597	73	2.0	73	92	0	241	27	11	20	40	1.87
287189--287417	125	1.8	124	95	0	413	31	9	19	39	1.83
287550--287764	110	2.0	107	93	6	371	38	10	6	44	1.65
295192--295217	3	8.7	3	100	0	52	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295404--295428	2	12.5	2	100	0	50	48	0	0	52	1.00
305580--305627	2	24.0	2	93	0	78	52	0	2	45	1.12
305572--305627	20	2.8	20	94	0	94	53	0	3	42	1.18
307835--307873	17	2.3	17	95	0	69	30	28	17	23	1.97
308251--308281	2	15.5	2	100	0	62	48	0	0	51	1.00
308389--308432	12	3.7	12	82	11	54	18	0	0	81	0.68
308387--308432	24	1.9	24	90	0	74	19	0	0	80	0.71
325238--325440	110	1.9	106	89	4	316	33	23	16	26	1.96
325648--326121	253	1.9	252	86	0	678	33	22	17	25	1.96
325962--326203	124	2.0	124	88	0	358	33	23	17	25	1.96
326264--326386	36	3.4	35	75	17	108	27	19	13	39	1.88
326289--326400	36	3.1	35	87	3	161	27	17	14	40	1.89
326423--326579	73	2.2	73	88	4	228	24	19	14	40	1.89
326423--326579	37	4.3	36	85	4	208	24	19	14	40	1.89
326611--326796	84	2.2	83	82	1	219	33	25	17	23	1.96
330800--330853	25	2.2	25	100	0	108	22	0	24	53	1.46
342984--343014	2	15.5	2	93	0	53	45	0	54	0	0.99
343414--343487	30	2.5	30	84	2	96	35	22	29	12	1.91
344331--344380	23	2.1	24	81	7	57	54	2	0	44	1.11
344447--344481	18	1.9	18	88	0	52	80	5	0	14	0.89
344967--344998	17	1.9	17	93	6	57	71	0	0	28	0.86
349111--349200	28	3.2	28	85	3	128	35	27	17	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349355--349396	21	2.0	21	85	4	57	28	30	0	40	1.57
350282--350425	54	2.6	55	92	1	236	28	22	20	29	1.98
353501--353581	28	2.9	28	88	0	126	34	27	16	22	1.95
353749--353780	7	4.6	7	100	0	64	15	40	0	43	1.47
354157--354181	12	2.1	12	100	0	50	24	0	0	76	0.80
354683--354799	55	2.1	54	88	1	171	34	23	13	29	1.93
354767--354839	20	3.7	20	96	0	128	30	31	10	27	1.91
357950--357996	22	2.1	23	88	4	69	51	8	0	40	1.33
357977--358025	16	3.1	16	79	2	64	57	4	2	36	1.30
358406--358433	3	9.3	3	100	0	56	67	32	0	0	0.91
368048--368132	33	2.6	33	92	0	134	8	37	28	25	1.85
368052--368108	10	5.4	10	74	12	51	7	40	26	26	1.81
368114--368146	14	2.4	14	94	0	57	6	30	39	24	1.79
368587--368647	32	1.9	32	93	0	104	42	22	14	19	1.88
368983--369186	103	2.0	103	91	1	329	28	12	20	38	1.89
372303--372360	29	2.0	30	82	3	73	29	10	5	55	1.55
373198--373353	84	1.9	84	84	0	213	43	15	20	20	1.88
389402--389462	27	2.1	27	85	8	77	24	16	6	52	1.67
399374--399464	40	2.3	40	100	0	182	39	12	16	31	1.85
403819--403870	23	2.2	24	83	6	72	32	3	1	61	1.25
405108--405147	19	2.1	19	100	0	80	35	20	15	30	1.93
409828--409985	21	7.8	20	71	4	84	38	25	17	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409953--410181	20	11.4	20	79	5	212	37	25	17	19	1.93
410850--410896	24	2.0	24	87	8	69	25	14	21	38	1.92
411071--411095	12	2.1	12	100	0	50	72	0	28	0	0.86
413394--413632	72	3.4	71	81	12	296	46	17	22	13	1.83
413380--413650	53	5.1	53	90	7	412	46	17	22	13	1.83
413361--413655	72	4.2	70	78	14	277	45	18	22	13	1.85
413627--413742	53	2.2	52	86	3	160	18	23	18	38	1.93
413646--413763	53	2.2	53	96	3	220	13	24	17	44	1.85
413665--413763	20	5.4	19	83	14	136	14	23	17	45	1.84
413870--413906	14	2.6	14	91	0	65	45	21	0	32	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24