genome.fa.s9344.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009344.1 Hibiscus syriacus cultivar Beakdansim tig00113124_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4287485

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  7  of  24  ( 2784 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1021891--1021972	41	2.0	41	92	2	139	18	37	29	14	1.90
1024723--1024782	20	3.0	20	90	2	95	20	38	26	15	1.91
1025130--1025199	34	2.1	32	86	5	95	31	15	30	22	1.95
1027107--1027247	39	3.6	39	81	0	174	29	21	28	20	1.98
1027094--1027245	78	1.9	78	91	0	250	28	22	27	21	1.99
1027852--1027893	21	2.0	22	85	4	59	59	16	7	16	1.58
1028507--1028545	11	3.5	11	92	3	60	48	10	2	38	1.51
1031602--1031685	29	2.9	29	96	0	150	44	7	13	35	1.71
1032907--1032940	18	1.9	17	88	5	50	67	2	0	29	1.05
1046857--1046895	16	2.4	16	82	0	51	20	15	38	25	1.92
1047348--1047388	21	1.9	22	90	5	66	9	21	41	26	1.84
1051930--1051970	21	1.9	22	85	5	57	7	21	43	26	1.79
1052610--1052672	22	3.0	20	90	6	74	19	4	23	52	1.65
1052621--1052672	22	2.4	22	100	0	104	23	3	23	50	1.66
1057806--1057894	44	2.0	44	100	0	178	34	22	11	31	1.89
1070478--1070540	30	2.1	30	85	2	83	50	12	9	26	1.71
1070571--1070712	30	4.4	31	72	20	105	59	6	4	28	1.43
1071065--1071131	20	3.3	20	73	8	73	38	28	13	19	1.89
1071065--1071168	40	2.6	40	95	0	181	37	26	15	20	1.92
1071082--1071149	20	3.4	20	74	8	75	39	23	16	20	1.91
1071204--1071249	20	2.3	20	92	0	74	23	13	30	32	1.93
1071162--1071309	77	1.9	77	87	0	215	27	16	22	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1071364--1071555	77	2.5	77	92	0	312	26	13	21	38	1.90
1071462--1071509	20	2.4	21	89	6	73	25	14	25	35	1.94
1071482--1071621	57	2.5	57	90	0	208	25	15	21	37	1.92
1071407--1071834	134	3.2	134	89	0	622	27	14	20	36	1.93
1071319--1071968	211	3.1	211	76	8	674	28	14	20	36	1.92
1071598--1071643	20	2.3	20	92	0	74	26	15	23	34	1.94
1071538--1071700	77	2.1	77	89	2	256	28	15	20	34	1.94
1071616--1071750	57	2.4	57	92	2	218	28	16	20	34	1.94
1071732--1071775	20	2.2	20	95	0	79	34	15	18	31	1.92
1071806--1071854	20	2.5	20	79	0	62	28	16	22	32	1.95
1071885--1071922	20	1.9	20	94	0	67	34	10	18	36	1.85
1071883--1071928	20	2.3	20	80	0	65	28	13	23	34	1.92
1071672--1072007	77	4.3	78	81	4	371	27	14	21	36	1.92
1071978--1072033	21	2.7	21	86	10	71	26	12	26	33	1.92
1072025--1072073	20	2.5	20	89	0	71	22	12	16	48	1.79
1074322--1074356	3	11.7	3	100	0	70	31	0	0	68	0.90
1078119--1078150	16	1.9	17	93	6	57	3	12	0	84	0.74
1080346--1080401	19	2.9	19	97	0	103	32	28	16	23	1.96
1080682--1080719	17	2.2	17	90	0	58	28	34	5	31	1.80
1081367--1081426	24	2.5	24	83	0	84	26	16	18	38	1.92
1081883--1081908	5	5.2	5	100	0	52	23	57	19	0	1.40
1084094--1084128	18	1.9	18	94	0	61	54	22	2	20	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1084299--1084515	20	10.9	20	91	0	335	30	20	20	28	1.97
1084555--1084618	20	3.2	20	84	0	92	14	17	21	46	1.83
1084752--1084788	14	2.6	14	100	0	74	48	21	0	29	1.50
1086181--1086286	42	2.5	42	76	0	104	25	17	34	21	1.96
1086587--1086662	33	2.3	34	83	2	91	47	18	18	15	1.83
1086742--1086810	20	3.5	20	86	7	95	17	18	26	37	1.93
1088703--1088798	21	4.8	21	74	8	92	48	21	16	12	1.79
1088706--1088803	39	2.5	40	91	3	153	45	21	17	15	1.84
1088742--1088814	20	3.7	20	71	10	78	38	23	19	19	1.93
1088819--1088862	19	2.3	19	88	7	63	45	22	18	13	1.84
1088876--1088923	19	2.5	19	100	0	96	10	20	22	45	1.81
1089270--1089327	22	2.6	22	91	0	98	17	18	44	18	1.87
1089487--1089558	20	3.6	20	77	7	83	25	20	25	29	1.99
1090183--1090278	33	2.9	33	81	6	97	12	27	21	38	1.90
1091499--1091531	17	1.9	17	93	0	57	36	12	9	42	1.74
1098052--1098167	57	2.0	57	100	0	232	40	20	23	15	1.91
1103547--1103643	23	4.2	23	89	1	140	34	26	23	15	1.95
1103547--1103672	46	2.7	46	82	1	153	32	26	23	17	1.97
1104373--1104420	21	2.5	19	83	10	53	29	12	10	47	1.74
1108136--1108182	19	2.5	19	89	0	67	42	25	21	10	1.85
1112499--1112901	200	2.0	203	98	1	776	26	11	21	40	1.86
1116211--1116319	31	3.5	31	96	0	191	41	21	18	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1120381--1120419	20	1.9	21	94	5	71	41	15	0	43	1.46
1120682--1120805	31	4.0	31	93	2	205	39	22	18	19	1.92
1121513--1121560	19	2.5	19	89	0	69	22	25	16	35	1.95
1127888--1127957	35	2.0	35	100	0	140	37	14	11	37	1.82
1133606--1133653	20	2.4	20	96	0	87	22	25	16	35	1.95
1139662--1139688	2	13.5	2	100	0	54	51	0	0	48	1.00
1148353--1148417	29	2.2	29	94	2	112	44	23	9	23	1.81
1149610--1149665	27	1.9	28	86	13	78	39	3	1	55	1.28
1149608--1149672	30	2.3	27	78	10	76	41	6	1	50	1.36
1149669--1149713	17	2.6	17	82	6	56	40	0	4	55	1.20
1149830--1149894	21	3.2	21	71	28	68	47	0	0	52	1.00
1149837--1149975	40	3.5	38	80	13	131	46	1	1	51	1.19
1149837--1149944	21	5.2	20	71	20	73	48	0	0	50	1.13
1149864--1149913	25	2.0	25	84	0	64	46	0	2	52	1.12
1149890--1149956	21	3.2	20	70	16	55	47	1	2	47	1.26
1149948--1150019	32	2.1	34	78	19	80	44	2	4	48	1.36
1151043--1151119	41	1.9	39	86	5	109	50	2	0	46	1.15
1152445--1152493	20	2.5	20	93	0	80	32	34	10	22	1.88
1152502--1152582	20	4.0	20	71	9	65	35	20	16	27	1.94
1152567--1152662	40	2.4	40	83	10	108	28	19	14	37	1.91
1152605--1152653	20	2.4	21	76	10	57	30	22	14	32	1.93
1152566--1152733	60	2.8	60	78	0	174	29	18	13	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1152686--1152723	20	1.9	20	88	0	58	26	21	13	39	1.89
1153245--1153340	20	5.1	20	69	19	80	20	13	21	43	1.86
1154714--1154921	42	5.0	42	92	1	296	25	37	13	23	1.91
1155035--1155211	21	8.4	21	74	7	135	19	10	33	37	1.85
1155035--1155211	63	2.8	63	83	1	221	19	10	33	37	1.85
1155534--1155645	21	5.3	21	72	12	68	21	34	13	30	1.92
1157586--1157689	20	5.2	20	76	0	109	45	20	12	22	1.84
1157586--1157682	40	2.4	40	82	3	124	45	20	12	21	1.84
1157692--1157841	20	7.7	20	74	6	137	25	10	22	42	1.85
1157726--1157801	36	2.1	35	87	2	107	25	10	23	40	1.86
1157706--1157820	56	2.1	56	86	3	162	26	9	21	42	1.83
1158374--1158408	18	1.9	18	94	0	61	17	2	25	54	1.57
1160513--1160565	24	2.2	24	86	0	70	35	13	18	32	1.90
1161480--1161517	20	1.9	20	88	0	58	42	2	21	34	1.67
1161503--1161672	20	8.4	20	70	8	76	37	12	21	28	1.89
1161503--1161672	40	4.2	40	73	7	128	37	12	21	28	1.89
1161665--1161758	20	4.7	19	73	8	80	24	13	23	38	1.91
1165312--1165363	15	3.5	14	72	12	50	61	3	0	34	1.14
1165313--1165371	30	2.0	30	93	0	100	59	3	0	37	1.14
1165322--1165375	15	3.5	15	74	2	54	59	3	0	37	1.15
1166518--1166588	28	2.6	27	82	6	81	53	15	2	28	1.56
1169411--1169469	26	2.3	26	80	8	68	61	1	1	35	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1170830--1170901	23	3.1	23	82	4	92	36	26	18	19	1.94
1170832--1170930	46	2.2	46	83	7	121	35	24	20	20	1.96
1170830--1170914	23	3.7	23	80	3	91	34	25	17	22	1.96
1171099--1171207	14	7.4	14	69	17	60	35	19	6	38	1.77
1171057--1171250	45	4.3	45	80	3	203	34	20	6	38	1.79
1171066--1171233	89	1.9	90	86	1	239	34	19	5	40	1.75
1173016--1173065	23	2.2	23	96	0	91	54	4	10	32	1.52
1175320--1175428	35	3.2	34	81	12	100	33	0	3	62	1.13
1175320--1175399	33	2.5	32	84	10	92	31	0	5	63	1.15
1175568--1175621	17	3.2	17	72	0	54	31	0	3	64	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24