genome.fa.s107.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold107
Parameters: 2 7 7 80 10 50 1000
Length:  2327068

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  11  of  15  ( 1755 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1568468--1568953	84	5.8	85	78	4	450	42	12	25	19	1.86
1568423--1568904	168	2.9	167	86	1	687	43	11	25	19	1.85
1568471--1568773	42	7.2	41	66	11	139	42	11	26	18	1.85
1569418--1569590	44	3.9	44	72	10	140	37	13	23	25	1.91
1569398--1569562	88	1.9	88	80	7	192	38	13	23	24	1.91
1569584--1569694	47	2.4	47	84	0	141	37	11	22	27	1.89
1569715--1570312	35	16.6	35	79	5	478	43	10	22	24	1.84
1569998--1570181	41	4.6	41	78	8	166	42	10	21	25	1.84
1572631--1572669	20	2.0	20	85	10	53	12	10	2	74	1.17
1572632--1572687	27	2.2	26	87	6	78	8	10	3	76	1.12
1580927--1581004	36	2.2	36	88	2	113	47	15	12	24	1.80
1584909--1584990	28	2.9	27	80	10	94	28	14	32	24	1.94
1585125--1585200	27	2.8	28	88	6	102	21	21	34	23	1.97
1587664--1587689	13	2.0	13	100	0	52	38	15	15	30	1.88
1587643--1587709	33	2.0	33	88	0	98	43	16	14	25	1.86
1587729--1587796	19	3.9	18	76	23	83	38	14	11	35	1.83
1587751--1587775	13	1.9	13	100	0	50	32	16	16	36	1.90
1587732--1587794	32	2.0	32	96	0	117	36	15	12	34	1.86
1588517--1588559	21	2.0	21	90	0	68	41	16	11	30	1.83
1588925--1589015	32	2.7	32	78	17	96	34	21	15	28	1.94
1591081--1591168	20	4.8	19	76	21	89	29	18	13	38	1.89
1591071--1591150	33	2.4	33	100	0	160	27	17	15	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1591071--1591131	13	5.2	13	77	22	80	27	16	16	39	1.90
1593461--1593694	51	4.6	51	89	1	319	28	25	11	34	1.91
1593626--1593922	79	3.8	78	83	2	362	27	25	14	31	1.95
1593626--1593922	157	1.9	158	84	3	402	27	25	14	31	1.95
1593862--1593981	51	2.4	51	84	2	152	30	28	14	27	1.95
1593910--1594060	79	1.9	79	83	0	194	28	27	14	29	1.95
1593993--1594108	51	2.3	51	89	3	180	28	28	12	30	1.94
1593785--1594138	130	2.7	130	79	9	398	27	27	13	31	1.94
1606447--1606499	1	53.0	1	76	0	52	88	9	1	0	0.58
1606450--1606499	9	5.7	9	83	4	66	88	10	2	0	0.61
1606447--1606499	17	3.3	17	82	17	69	88	9	1	0	0.58
1607593--1608244	55	11.3	55	82	10	709	27	26	20	25	1.99
1607592--1608244	116	5.7	116	81	11	674	27	26	20	25	1.99
1607615--1608244	171	3.6	175	82	9	713	27	26	20	26	1.99
1609156--1609242	20	4.7	20	76	21	91	26	16	14	42	1.87
1609173--1609242	33	2.1	33	97	0	131	27	17	14	41	1.87
1609193--1609223	13	2.4	13	100	0	62	29	16	16	38	1.90
1611571--1611714	51	2.8	51	86	0	189	31	25	9	33	1.88
1611650--1611951	79	3.8	77	83	6	345	28	26	13	30	1.94
1611887--1612005	51	2.3	51	87	5	170	30	29	11	28	1.92
1611989--1612058	28	2.5	28	81	11	90	27	31	17	24	1.97
1611862--1612160	158	1.9	158	81	2	368	29	28	12	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1612048--1612160	51	2.2	51	87	0	163	30	27	11	30	1.92
1611861--1612197	158	2.1	157	79	4	365	28	27	13	31	1.94
1613961--1614001	20	2.0	21	85	4	57	24	24	17	34	1.96
1617643--1617674	15	2.1	15	100	0	64	21	6	37	34	1.79
1617784--1617847	22	3.0	21	71	13	51	71	3	3	21	1.13
1619604--1619667	34	2.0	33	85	14	89	57	12	12	17	1.64
1620162--1620202	21	2.0	21	90	9	66	39	7	7	46	1.60
1620809--1620901	47	2.0	46	97	2	177	30	30	0	39	1.57
1627243--1627268	3	8.7	3	100	0	52	30	34	0	34	1.58
1629057--1629109	19	2.8	19	85	0	79	39	15	15	30	1.87
1630298--1630331	2	17.5	2	93	6	61	50	0	0	50	1.00
1630438--1630486	14	3.4	14	75	10	53	63	0	0	36	0.95
1630437--1630528	30	3.1	30	78	9	91	65	1	1	32	1.07
1630444--1630528	31	2.8	32	80	10	88	64	1	1	32	1.08
1638319--1638363	17	2.8	16	84	15	65	75	0	2	22	0.91
1639408--1639460	20	2.7	21	80	11	67	32	13	18	35	1.90
1639501--1639552	20	2.5	21	81	9	63	26	17	17	38	1.92
1642072--1642111	20	2.0	21	95	5	73	35	15	15	35	1.88
1646871--1646945	20	3.8	20	78	7	89	40	13	13	33	1.83
1646868--1646945	40	2.0	39	87	2	111	39	14	12	33	1.84
1647535--1648461	28	32.6	28	81	8	989	22	18	31	27	1.97
1649677--1649725	13	3.9	12	78	7	53	2	4	14	79	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1662965--1663040	40	1.9	39	83	2	98	38	13	14	34	1.85
1665424--1665487	30	2.1	30	100	0	128	32	17	15	34	1.91
1666161--1666191	12	2.6	12	94	0	53	25	38	0	35	1.56
1667614--1667639	13	2.0	13	100	0	52	30	15	15	38	1.88
1667594--1667657	33	2.0	32	87	9	94	28	14	20	37	1.91
1667739--1667763	13	1.9	13	100	0	50	36	16	16	32	1.90
1669570--1669649	38	2.1	37	88	2	115	26	11	12	50	1.74
1669583--1669659	38	2.0	38	84	0	100	29	10	11	48	1.73
1669821--1669938	57	2.1	57	81	9	134	30	5	17	46	1.70
1669846--1669957	57	2.0	57	81	13	133	33	3	13	49	1.59
1673745--1673798	20	2.6	21	76	2	56	42	12	12	31	1.81
1673856--1673910	20	2.7	21	82	5	76	38	14	5	41	1.69
1677913--1678026	50	2.3	50	93	0	192	30	17	8	42	1.80
1682611--1682663	19	2.8	19	82	0	70	37	15	16	30	1.90
1683841--1683877	2	18.5	2	100	0	74	51	0	0	48	1.00
1683988--1684036	14	3.4	14	75	10	53	63	0	0	36	0.95
1683987--1684078	30	3.1	30	78	9	91	65	1	1	32	1.07
1683994--1684078	31	2.8	32	80	10	88	64	1	1	32	1.08
1691461--1691494	10	3.4	10	88	11	52	8	5	2	82	0.93
1691454--1691492	17	2.3	17	86	0	51	10	5	2	82	0.93
1691891--1691942	6	8.2	6	78	16	52	76	0	1	21	0.87
1692976--1693020	19	2.4	19	81	3	56	13	17	0	68	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1693746--1693825	38	2.1	37	88	2	115	26	11	12	50	1.74
1693759--1693835	38	2.0	38	84	0	100	29	10	11	48	1.73
1693983--1694125	58	2.5	59	80	8	168	31	6	14	46	1.71
1697922--1697997	20	3.8	20	75	3	62	40	14	10	34	1.80
1698035--1698086	20	2.5	20	81	3	59	38	15	3	42	1.65
1702128--1702208	20	3.5	20	69	28	63	28	17	9	44	1.80
1702095--1702208	50	2.3	50	93	0	201	28	17	9	43	1.81
1705493--1705563	30	2.3	30	78	7	72	53	8	8	29	1.60
1706677--1706921	79	3.1	79	81	3	298	33	13	25	27	1.94
1706802--1707049	130	1.9	130	85	4	340	36	14	21	27	1.93
1706881--1706989	51	2.1	51	84	3	139	35	15	20	28	1.93
1706955--1707223	79	3.4	79	83	6	341	32	15	25	26	1.95
1707159--1707279	51	2.4	51	84	2	154	30	12	27	29	1.93
1706687--1707272	285	2.0	285	85	2	791	32	14	25	26	1.94
1707189--1707327	51	2.7	51	82	2	163	33	10	26	30	1.89
1709649--1709718	33	2.1	33	94	0	122	40	15	17	27	1.90
1709629--1709735	20	5.7	20	75	18	88	41	14	15	28	1.87
1709668--1709698	13	2.4	13	94	0	53	35	19	16	29	1.93
1709774--1709799	13	2.0	13	100	0	52	38	15	15	30	1.88
1714461--1714554	48	1.9	49	82	6	120	42	15	13	27	1.85
1715688--1715735	21	2.2	21	81	7	51	41	4	6	47	1.48
1718251--1718544	154	1.9	154	85	1	392	30	8	8	51	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1721052--1721107	19	3.2	19	71	23	68	37	10	17	33	1.85
1721377--1722070	166	4.2	164	81	7	735	32	11	13	42	1.79
1722187--1722932	155	4.8	155	80	6	710	27	13	18	41	1.88
1722187--1722951	154	4.9	155	81	5	780	27	13	18	40	1.88
1722153--1722931	309	2.5	308	81	4	829	27	13	18	41	1.88
1723911--1723962	20	2.5	21	84	3	61	40	13	11	34	1.81
1727332--1727450	52	2.3	53	77	13	124	29	13	11	45	1.79
1729735--1729762	10	2.8	10	100	0	56	32	21	28	17	1.96
1735889--1735927	13	3.0	13	92	0	60	30	15	15	38	1.88
1736363--1736414	20	2.4	21	84	9	61	25	50	21	3	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15