genome.fa.s107.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold107
Parameters: 2 7 7 80 10 50 1000
Length:  2327068

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  4  of  15  ( 1755 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426559--426733	79	2.2	79	85	0	233	35	13	21	29	1.92
426556--426780	79	2.8	79	76	10	226	34	13	23	28	1.93
426651--426889	130	1.8	130	86	1	345	35	12	23	28	1.91
426763--427064	79	3.8	78	84	2	379	31	13	26	28	1.94
426536--426989	209	2.2	207	79	7	522	33	13	24	28	1.93
429401--429430	13	2.3	13	94	0	51	40	16	16	26	1.90
429996--430096	40	2.4	42	85	8	127	43	9	26	19	1.82
429992--430098	42	2.6	41	80	14	123	42	10	26	21	1.85
430116--430266	41	3.5	43	75	12	130	45	11	25	17	1.82
429986--430215	120	1.9	117	79	7	250	40	13	24	21	1.88
430262--430590	61	5.5	60	79	8	327	30	20	24	24	1.99
430261--430566	121	2.5	121	80	8	370	30	20	24	24	1.98
430449--430743	150	1.9	152	84	4	396	28	20	25	25	1.99
430606--430793	55	3.4	56	85	2	263	25	21	25	28	1.99
430453--430866	205	2.0	207	87	4	593	28	19	26	25	1.99
431869--431909	21	2.0	21	85	0	55	0	9	4	85	0.73
431883--431936	16	3.6	14	80	14	63	1	1	11	85	0.76
431880--431927	19	2.5	19	89	3	69	2	2	10	85	0.77
431880--431932	20	2.6	19	85	8	61	1	1	11	84	0.77
444340--444556	79	2.7	79	81	8	230	34	12	23	29	1.92
444412--444816	130	3.1	128	81	6	426	33	12	25	28	1.92
444623--444735	51	2.2	51	88	3	165	33	7	25	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444674--444895	78	2.8	77	82	8	243	31	13	25	28	1.94
444973--445009	18	2.1	18	100	0	74	18	21	32	27	1.97
447211--447265	20	2.8	20	88	5	76	47	14	10	27	1.78
447919--447945	13	2.1	13	100	0	54	29	14	14	40	1.86
447929--447987	19	3.1	19	87	2	82	37	15	15	32	1.88
447933--447987	20	2.8	19	88	2	74	36	14	16	32	1.89
450908--450962	18	3.0	18	75	12	58	52	1	0	45	1.11
457063--457088	13	2.0	13	100	0	52	38	15	15	30	1.88
457816--458376	277	2.0	277	99	0	1113	32	23	18	24	1.97
458973--459006	12	2.8	12	90	0	50	41	0	35	23	1.55
463538--463562	13	1.9	13	100	0	50	32	20	16	32	1.94
463684--463730	22	2.3	20	82	10	60	31	17	4	46	1.67
465934--465988	20	2.8	19	88	5	74	41	16	12	29	1.85
468159--468199	3	13.7	3	94	0	73	36	0	31	31	1.58
474318--474402	35	2.4	37	82	4	93	27	12	14	45	1.81
479493--479588	38	2.5	38	86	6	115	26	15	19	38	1.92
479519--479620	38	2.7	38	86	3	125	25	17	18	38	1.93
486954--487040	30	2.8	31	81	8	106	29	17	21	31	1.96
487034--487156	38	3.2	38	83	4	160	22	13	20	43	1.87
487180--487220	2	20.5	2	94	0	73	46	0	2	51	1.14
491227--491254	13	2.2	13	100	0	56	39	17	14	28	1.89
500686--500729	21	2.0	21	86	4	61	65	0	2	31	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502587--502612	2	13.0	2	100	0	52	50	0	0	50	1.00
508438--508483	14	3.3	13	82	11	56	65	0	0	34	0.93
508445--508484	14	2.9	14	92	0	62	62	0	0	37	0.95
508459--508528	14	5.0	14	68	6	52	55	0	1	42	1.08
508623--508664	19	2.2	19	100	0	84	52	0	9	38	1.34
509082--509269	97	1.9	96	84	5	245	34	11	21	32	1.89
510598--510656	14	4.2	14	71	16	50	50	1	0	47	1.11
510600--510657	28	2.1	27	84	9	73	50	1	0	48	1.11
511375--511428	10	5.0	10	77	16	54	27	20	3	48	1.66
511368--511424	24	2.4	24	87	0	87	26	19	5	49	1.69
511375--511439	34	1.9	34	93	0	112	26	20	6	47	1.73
511537--511568	15	2.1	15	94	0	55	56	21	12	9	1.64
517308--517350	20	2.1	20	86	4	59	9	30	44	16	1.79
517791--517815	13	1.9	13	100	0	50	32	16	16	36	1.90
519900--519930	15	2.1	15	93	0	53	12	22	16	48	1.80
522934--522959	13	2.0	13	100	0	52	38	15	15	30	1.88
522916--522979	32	2.0	33	87	3	94	40	17	14	28	1.88
523249--523291	22	1.9	22	81	13	52	18	16	9	55	1.67
525170--525214	21	2.1	21	84	8	56	53	4	20	22	1.63
527021--527051	15	2.1	15	93	0	53	48	16	22	12	1.80
529120--529158	13	3.0	13	96	0	69	30	17	15	35	1.91
531680--531731	19	2.7	20	84	6	70	40	17	13	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
533987--534012	13	2.0	13	100	0	52	30	15	15	38	1.88
537575--537613	20	2.0	20	90	5	62	48	20	0	30	1.50
537807--537860	28	2.0	27	82	13	67	18	5	3	72	1.20
538676--538823	76	1.9	75	80	8	165	36	12	21	29	1.91
546236--546309	20	3.8	19	87	5	85	32	10	16	40	1.83
546255--546310	20	2.8	20	91	2	87	35	10	16	37	1.83
548827--548856	13	2.3	13	94	0	51	36	10	16	36	1.82
548805--548873	33	2.1	32	84	10	86	37	17	13	31	1.88
548902--548974	20	3.8	20	90	3	105	36	17	13	31	1.89
548942--548993	19	2.7	19	90	3	77	44	13	15	26	1.84
551910--551934	13	1.9	13	100	0	50	36	16	16	32	1.90
551890--551953	32	2.0	33	96	3	121	34	12	18	34	1.89
551889--551972	19	4.7	19	80	18	108	33	11	17	36	1.87
551994--552018	13	1.9	13	100	0	50	32	16	16	36	1.90
552027--552155	52	2.5	52	96	0	240	33	17	20	28	1.95
553052--553120	32	2.1	33	91	2	113	34	10	17	37	1.83
553158--553182	13	1.9	13	100	0	50	32	16	16	36	1.90
558942--559189	98	2.5	97	79	2	255	36	13	23	26	1.92
559111--559280	88	1.9	89	84	3	227	35	12	24	28	1.91
561606--561724	51	2.3	52	89	1	177	42	13	15	29	1.85
569070--569111	21	2.0	21	100	0	84	42	9	4	42	1.58
581641--581687	19	2.5	18	86	6	58	82	2	12	2	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581794--585221	886	3.9	885	92	2	5521	33	16	17	32	1.93
585215--585260	20	2.4	19	85	3	56	43	10	15	30	1.81
586340--586383	20	2.2	20	87	0	61	20	9	4	65	1.38
586380--586508	68	1.9	68	88	0	195	23	20	10	45	1.81
586553--586817	115	2.3	115	86	4	349	25	9	20	45	1.80
586564--586818	57	4.4	58	80	7	254	24	9	20	45	1.81
586616--586700	29	3.0	29	67	14	68	25	11	16	45	1.81
589140--589643	253	2.0	253	100	0	1008	35	19	16	28	1.94
592037--592090	26	2.1	26	89	6	83	29	0	0	70	0.88
601986--602082	50	1.9	50	91	4	158	45	11	16	26	1.81
602713--602748	16	2.2	16	95	0	63	13	8	11	66	1.44
602992--603033	21	1.9	23	90	9	70	38	0	28	33	1.58
603628--603690	33	1.9	32	87	9	92	30	14	12	42	1.82
603740--603809	33	2.1	33	81	5	79	31	12	20	35	1.90
605427--605451	2	12.5	2	100	0	50	52	0	0	48	1.00
606455--606488	17	2.0	17	94	0	59	2	20	0	76	0.92
610443--610485	3	14.3	3	100	0	86	67	0	0	32	0.91
612886--612961	37	2.0	40	84	7	104	51	1	3	43	1.28
612862--612992	32	3.8	35	74	18	123	54	0	3	41	1.21
614963--615001	20	1.9	21	89	5	62	17	15	23	43	1.87
618503--618651	52	2.9	51	87	4	217	30	16	18	34	1.93
618640--618664	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618727--618751	13	1.9	13	100	0	50	32	16	16	36	1.90
618709--618771	33	1.9	33	86	0	90	41	15	11	31	1.83
619566--619850	55	5.7	52	80	9	199	32	16	24	26	1.96
619677--619861	48	4.0	44	79	11	210	29	16	25	27	1.97
619619--619850	92	2.4	93	84	8	288	32	16	24	26	1.96
619619--619857	97	2.5	94	84	8	295	32	16	24	26	1.96
619878--620001	28	4.3	28	81	7	126	17	15	29	37	1.91
620042--620274	29	8.0	29	78	6	220	26	17	27	29	1.97
620078--620248	30	6.0	27	79	8	144	23	17	28	29	1.97
620087--620251	88	1.9	87	89	3	260	25	15	28	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15