genome.fa.s107.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold107
Parameters: 2 7 7 80 10 50 1000
Length:  2327068

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  12  of  15  ( 1755 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1738469--1738493	13	1.9	13	100	0	50	32	16	16	36	1.90
1738449--1738516	33	2.1	33	88	2	102	35	17	14	32	1.91
1739712--1739910	99	2.0	99	85	3	267	30	19	9	40	1.83
1739747--1739951	99	2.1	99	83	3	252	31	20	8	40	1.83
1739980--1740045	2	33.0	2	100	0	132	0	50	0	50	1.00
1743117--1743175	15	4.0	15	75	2	57	38	6	0	54	1.27
1743510--1743557	21	2.3	21	89	7	71	62	0	0	37	0.95
1744334--1744438	17	6.2	16	66	21	54	47	0	0	52	1.00
1744346--1744436	20	4.1	21	70	24	62	48	0	0	51	1.00
1744334--1744409	30	2.5	30	76	18	77	46	0	0	53	1.00
1744387--1744434	25	2.0	24	84	12	62	52	0	0	47	1.00
1744709--1744769	15	3.7	17	76	22	67	60	0	1	37	1.07
1744698--1744766	32	2.2	32	82	15	81	60	0	4	34	1.16
1746774--1746898	43	2.9	42	84	4	169	36	13	13	36	1.84
1746774--1746939	43	3.9	44	82	7	164	36	12	11	39	1.80
1746874--1746953	42	1.9	42	82	5	99	40	11	6	42	1.66
1746874--1746965	42	2.2	41	80	3	94	40	11	8	39	1.73
1747519--1747580	30	2.0	32	87	12	94	6	19	3	70	1.22
1756812--1756862	22	2.3	22	86	6	68	66	0	0	33	0.92
1756799--1756903	28	3.7	28	78	17	103	60	0	0	39	1.04
1756851--1756975	47	2.7	43	76	19	103	56	0	0	43	1.05
1756923--1756962	20	2.0	20	85	9	55	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1757115--1757163	25	1.9	25	91	4	80	38	0	0	61	0.96
1757358--1757411	12	4.7	12	69	17	51	37	1	0	61	1.07
1757374--1757442	31	2.4	28	85	11	86	37	1	0	60	1.06
1757358--1757426	18	3.9	18	76	16	65	37	1	0	60	1.06
1757398--1757442	13	3.1	15	78	15	58	40	0	0	60	0.97
1758314--1758365	18	3.3	15	75	19	52	34	0	0	65	0.93
1758322--1758361	18	2.2	19	90	4	64	35	0	0	65	0.93
1759241--1759271	5	6.2	5	92	0	53	35	0	0	64	0.94
1765195--1765256	19	3.2	19	69	13	54	43	14	14	27	1.84
1765244--1765268	13	1.9	13	100	0	50	36	16	16	32	1.90
1765223--1765295	32	2.3	32	92	0	119	36	12	15	35	1.84
1765225--1765287	19	3.7	18	74	24	64	34	12	15	36	1.86
1765312--1765353	21	2.0	21	95	0	75	40	9	21	28	1.84
1765340--1765365	13	2.0	13	100	0	52	30	15	15	38	1.88
1767206--1767262	13	3.9	13	72	24	51	35	12	17	35	1.87
1767219--1767281	19	3.7	18	76	24	73	33	11	17	38	1.85
1767205--1767289	32	2.7	32	94	0	152	32	11	17	37	1.86
1767334--1767358	13	1.9	13	100	0	50	32	16	16	36	1.90
1768226--1768278	21	2.5	21	78	6	63	24	22	16	35	1.95
1769158--1769209	21	2.5	21	87	0	68	26	15	17	40	1.89
1771258--1771512	79	3.2	79	88	0	348	27	28	15	28	1.96
1771304--1771541	79	3.0	77	87	5	323	26	28	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1772638--1772668	2	16.0	2	93	6	55	51	0	0	48	1.00
1773915--1773959	2	22.5	2	100	0	90	51	0	0	48	1.00
1775051--1775101	20	2.5	21	81	12	61	52	0	11	35	1.38
1775053--1775091	19	2.0	20	90	5	62	48	0	12	38	1.42
1775381--1775426	21	2.1	22	92	4	76	58	0	0	41	0.98
1775578--1775619	21	2.0	21	86	9	59	52	0	0	47	1.00
1775750--1775781	17	1.9	17	93	6	57	37	0	0	62	0.95
1776043--1776078	15	2.3	17	81	18	51	30	0	2	66	1.06
1776580--1776616	20	1.9	19	89	10	58	54	0	0	45	1.00
1776800--1776842	22	2.0	22	86	9	61	37	2	0	60	1.10
1776952--1777103	35	4.1	35	68	23	98	34	8	7	48	1.63
1776925--1777091	82	2.0	82	100	0	334	33	9	8	48	1.66
1777011--1777103	35	2.8	33	81	15	104	35	8	8	47	1.65
1778001--1778038	19	2.0	19	85	10	51	63	2	7	26	1.35
1778945--1779190	122	2.0	122	99	0	483	29	15	15	40	1.87
1784289--1784359	29	2.4	30	92	2	117	26	18	16	38	1.92
1786678--1786849	79	2.2	80	82	8	201	29	26	12	31	1.93
1786866--1786975	51	2.2	51	84	0	139	29	21	13	35	1.92
1786916--1787530	79	7.8	79	73	11	375	28	25	13	32	1.94
1787073--1787191	51	2.3	52	91	4	206	29	26	11	32	1.92
1787175--1787248	28	2.6	29	81	10	91	25	31	18	24	1.98
1800936--1801066	55	2.4	54	86	6	158	28	29	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1800935--1801411	123	4.0	123	82	7	542	26	27	18	27	1.98
1800932--1801431	61	8.4	61	84	3	535	26	28	18	26	1.98
1808183--1808227	22	2.1	21	84	8	56	22	15	6	55	1.63
1808172--1808227	21	2.7	21	75	13	62	23	14	7	55	1.63
1810438--1810463	13	2.0	13	100	0	52	30	15	15	38	1.88
1810418--1810481	32	2.0	33	90	3	103	28	14	18	39	1.90
1810418--1810488	19	4.0	18	72	25	62	26	12	21	39	1.89
1816479--1816957	28	17.4	27	79	7	446	22	27	15	33	1.95
1816498--1816948	55	8.2	55	80	4	446	23	28	15	32	1.95
1816492--1816957	194	2.4	192	82	2	547	22	28	15	33	1.95
1816993--1817647	32	21.9	32	81	7	367	30	29	17	22	1.97
1816971--1817652	28	23.0	28	79	8	488	30	29	17	22	1.97
1816967--1817649	58	11.5	59	81	8	617	30	29	17	22	1.97
1817758--1817937	48	3.8	48	87	0	261	21	27	16	34	1.95
1818612--1818686	20	3.8	20	87	0	114	33	14	12	40	1.83
1822697--1822793	32	2.8	33	80	14	117	52	0	1	46	1.07
1822697--1822779	33	2.5	32	84	11	105	53	0	1	45	1.08
1822722--1822776	17	3.4	17	75	25	64	56	0	0	43	0.99
1823110--1823152	20	2.2	20	87	4	61	39	0	4	55	1.20
1823173--1823227	17	3.2	18	75	21	55	61	1	0	36	1.06
1823175--1823226	15	3.1	17	81	13	54	61	1	0	36	1.07
1826978--1827011	17	2.0	16	88	11	50	76	0	0	23	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1830499--1830529	15	2.1	15	100	0	62	48	6	6	38	1.55
1832289--1832349	17	3.6	16	75	20	54	67	0	0	32	0.91
1832365--1832426	12	5.5	12	74	18	53	50	0	0	50	1.00
1832510--1832554	15	2.9	17	78	18	53	62	0	0	37	0.96
1833395--1833449	11	5.1	11	80	10	69	47	1	1	49	1.23
1833864--1833916	22	2.3	23	80	6	63	47	0	3	49	1.19
1836497--1836577	4	20.8	4	73	22	57	76	0	19	3	0.93
1836498--1836566	20	3.7	19	76	20	83	73	0	21	4	1.00
1836494--1836586	35	2.7	35	94	0	159	76	0	18	5	0.97
1836515--1836580	11	5.8	11	78	7	69	80	0	16	3	0.84
1842484--1842563	36	2.3	35	81	12	85	72	10	12	5	1.26
1843892--1845310	27	52.0	27	92	1	2343	22	34	14	28	1.93
1843892--1845310	82	17.3	81	93	1	2343	22	34	14	28	1.93
1845293--1845670	32	11.8	32	92	0	596	31	32	18	17	1.94
1846914--1846992	4	20.8	4	75	23	57	75	0	20	3	0.95
1846915--1846982	20	3.7	19	72	23	74	73	0	22	4	1.01
1846911--1847001	34	2.6	34	94	1	155	75	0	18	5	0.98
1846932--1846995	10	5.9	10	79	15	65	79	0	17	3	0.85
1854800--1854846	21	2.3	20	82	13	60	44	17	14	23	1.85
1854148--1855089	467	2.0	467	97	0	1767	40	16	17	25	1.90
1860554--1860596	21	2.0	21	86	4	59	48	27	20	2	1.62
1860644--1860699	28	2.0	28	86	6	78	64	10	23	1	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1860647--1860698	22	2.3	21	80	9	59	65	11	21	1	1.34
1861929--1863312	156	8.9	156	80	4	1273	24	16	20	38	1.92
1861966--1863312	461	2.9	461	80	5	1385	24	16	20	38	1.92
1864613--1864663	13	4.0	13	84	5	77	37	15	13	33	1.87
1864616--1864664	25	1.9	26	95	4	91	36	16	12	34	1.86
1869141--1869372	51	4.6	51	81	6	274	30	25	11	32	1.91
1869140--1869372	101	2.3	101	87	0	349	30	25	11	32	1.91
1869360--1869432	29	2.6	29	86	2	94	20	32	19	27	1.97
1870346--1870370	13	1.9	13	100	0	50	36	16	16	32	1.90
1870433--1870557	52	2.4	52	94	0	214	36	18	17	27	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15