genome.fa.s107.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold107
Parameters: 2 7 7 80 10 50 1000
Length:  2327068

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  7  of  15  ( 1755 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
931448--931894	226	2.0	224	94	0	777	25	25	21	27	1.99
934020--934047	13	2.2	13	100	0	56	39	17	14	28	1.89
934002--934067	33	2.0	33	88	5	98	39	13	16	30	1.87
934099--934161	19	3.6	19	72	24	75	36	19	11	33	1.87
934091--934161	32	2.2	32	97	0	133	36	19	11	32	1.87
934812--934845	17	2.0	17	100	0	68	35	17	17	29	1.93
939889--939980	16	5.8	16	80	1	96	11	13	30	44	1.79
939882--939980	32	3.1	32	82	1	119	12	13	30	44	1.80
939942--940046	52	2.0	53	85	5	142	18	14	30	37	1.90
940769--940840	16	4.5	16	85	3	83	8	15	36	40	1.77
941333--941417	29	2.9	29	76	10	84	43	14	14	28	1.83
941433--941464	15	2.1	15	100	0	64	40	12	18	28	1.87
944569--944627	19	3.1	18	79	18	66	55	0	0	44	0.99
944781--944850	29	2.4	30	78	7	81	57	2	1	38	1.23
945467--945548	31	2.6	31	90	5	130	46	0	1	52	1.08
945472--945548	32	2.5	31	91	6	113	45	0	1	53	1.08
945594--945662	31	2.3	29	82	7	77	43	1	0	55	1.08
949008--949079	27	2.7	27	72	16	71	63	1	0	34	1.03
948979--949070	35	2.5	36	76	11	98	58	2	1	38	1.17
949047--949092	21	2.2	21	88	7	67	67	0	2	30	1.03
949047--949102	23	2.5	23	83	11	64	69	0	1	28	0.98
949680--949751	18	4.1	18	69	20	53	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
949672--949760	33	2.6	34	78	8	101	44	0	0	55	0.99
955187--955217	16	1.9	16	93	0	53	16	12	0	70	1.16
955242--955268	2	13.5	2	100	0	54	48	0	0	51	1.00
956035--956061	2	13.5	2	100	0	54	51	0	48	0	1.00
958487--958521	17	2.1	17	88	0	52	0	17	0	82	0.66
959066--959096	9	3.4	9	95	0	53	12	0	0	87	0.55
960825--960864	9	4.3	9	85	14	55	77	0	22	0	0.77
960825--960860	10	3.6	10	92	7	56	77	0	22	0	0.76
960825--960864	19	2.2	18	90	4	62	77	0	22	0	0.77
960825--960865	10	3.9	11	90	9	52	75	0	24	0	0.80
964389--964448	29	2.1	29	81	6	68	43	6	13	36	1.70
966842--966871	3	10.0	3	100	0	60	33	0	0	66	0.92
969448--969530	34	2.6	31	82	15	107	60	1	0	38	1.05
969596--969653	22	2.6	23	81	10	66	6	27	0	65	1.18
969569--969652	18	4.6	18	73	16	57	5	26	0	67	1.13
970279--970317	8	4.9	8	93	0	60	89	5	5	0	0.58
970359--970458	29	3.7	28	77	12	86	44	3	19	34	1.66
973676--973723	21	2.3	20	86	10	62	37	16	18	27	1.92
985571--985595	13	1.9	13	100	0	50	40	20	16	24	1.91
986905--986961	19	2.9	19	87	10	80	33	15	15	35	1.90
986945--986971	13	2.1	13	100	0	54	40	14	14	29	1.86
986926--986990	32	2.0	33	87	3	96	40	12	15	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
987570--987638	31	2.2	31	94	0	129	28	23	8	39	1.84
989527--989594	27	2.5	27	100	0	136	26	16	17	39	1.90
989672--989718	20	2.3	20	85	7	60	57	17	0	25	1.40
995972--995996	13	1.9	13	100	0	50	36	16	16	32	1.90
995949--996016	33	2.1	33	88	2	102	32	14	17	35	1.91
996048--996100	20	2.6	21	78	3	63	28	15	15	41	1.87
996088--996112	13	1.9	13	100	0	50	36	16	16	32	1.90
998563--998601	13	3.0	13	92	0	69	33	15	20	30	1.94
1003118--1003148	9	3.4	9	95	0	53	25	35	0	38	1.56
1004750--1004774	13	1.9	13	100	0	50	36	16	16	32	1.90
1004727--1004794	33	2.1	33	88	2	102	32	14	17	35	1.91
1005688--1005740	20	2.7	19	88	8	72	37	18	11	32	1.87
1005691--1005740	19	2.6	19	87	9	66	38	20	10	32	1.85
1005768--1005824	19	2.9	18	82	14	69	36	17	12	33	1.87
1013807--1013941	53	2.5	53	97	0	252	35	19	14	31	1.91
1020118--1020156	13	3.0	13	92	0	69	30	20	15	33	1.94
1022700--1022725	13	2.0	13	100	0	52	30	15	15	38	1.88
1022680--1022747	33	2.1	32	91	2	109	36	13	16	33	1.87
1023816--1023855	20	2.0	20	90	0	62	35	17	7	40	1.78
1023944--1023970	13	2.1	13	100	0	54	40	14	14	29	1.86
1023925--1024007	18	4.8	17	78	21	84	39	16	16	26	1.90
1023956--1024007	18	2.7	20	88	11	90	42	15	15	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1025486--1025992	141	3.6	139	82	5	590	43	10	8	36	1.71
1026811--1026837	2	13.5	2	100	0	54	48	0	0	51	1.00
1026846--1026886	20	2.0	21	85	9	57	39	21	4	34	1.75
1027106--1027148	20	2.1	21	82	4	52	11	11	0	76	1.02
1027322--1027359	16	2.4	16	86	4	51	60	0	7	31	1.25
1031122--1031188	33	2.0	33	88	0	98	34	11	13	40	1.81
1031142--1031166	13	1.9	13	100	0	50	36	16	16	32	1.90
1031232--1031256	13	1.9	13	100	0	50	32	16	16	36	1.90
1031265--1031385	52	2.3	52	97	0	224	34	18	18	28	1.94
1038630--1038674	23	1.9	24	81	4	56	42	15	2	40	1.59
1038438--1039726	165	7.8	164	82	6	1475	30	9	9	50	1.67
1038477--1039726	497	2.5	492	85	5	1664	30	10	9	49	1.67
1040061--1040109	11	4.7	10	79	16	55	79	0	20	0	0.73
1040060--1040100	13	3.5	13	75	25	54	80	0	19	0	0.71
1040057--1040110	22	2.5	20	83	13	72	81	0	18	0	0.69
1040959--1041377	153	2.8	150	86	4	583	40	9	9	40	1.70
1042863--1043673	73	11.1	73	73	6	489	31	28	12	27	1.92
1042863--1043649	144	5.4	145	76	7	616	31	28	11	27	1.92
1042863--1043338	213	2.2	215	81	4	530	32	30	11	25	1.92
1049346--1049370	13	1.9	13	100	0	50	32	16	16	36	1.90
1049421--1049475	19	2.8	19	86	2	65	36	10	16	36	1.84
1049460--1049486	13	2.1	13	100	0	54	40	14	14	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1052828--1052902	20	3.8	20	78	0	87	34	13	12	40	1.81
1052828--1052905	40	2.0	39	87	2	111	34	12	12	39	1.82
1053817--1053870	22	2.5	22	96	3	101	18	11	9	61	1.55
1060009--1060055	21	2.2	21	85	11	60	76	8	8	6	1.15
1061333--1062571	27	45.0	27	89	3	1796	23	34	14	27	1.93
1061333--1062571	55	22.5	54	88	3	1796	23	34	14	27	1.93
1061333--1062568	82	15.0	81	90	3	1808	23	34	14	27	1.93
1062554--1063167	32	19.2	32	93	1	1009	30	32	18	17	1.95
1063743--1063817	20	3.8	20	78	0	87	34	13	12	40	1.81
1063743--1063820	40	2.0	39	87	2	111	34	12	12	39	1.82
1064733--1064786	22	2.5	22	96	3	101	18	11	9	61	1.55
1072572--1072649	26	3.0	26	100	0	156	34	15	19	30	1.93
1072643--1072707	33	2.0	33	84	6	87	32	20	13	33	1.91
1072757--1072809	19	2.7	21	88	8	76	41	16	15	26	1.88
1078897--1079180	29	9.7	29	78	7	220	25	28	14	32	1.94
1078906--1079181	87	3.1	87	82	6	292	25	29	13	31	1.94
1079000--1079204	29	7.0	29	78	3	90	27	30	12	29	1.93
1079184--1079702	64	8.1	65	73	9	239	31	30	17	21	1.96
1079184--1079710	33	16.5	33	74	9	359	31	30	17	21	1.96
1079134--1079710	31	18.2	31	73	10	332	30	29	17	22	1.96
1079199--1079724	95	5.5	95	75	8	322	30	30	17	21	1.96
1079282--1079710	191	2.3	190	76	7	460	30	30	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1079780--1080081	52	5.8	51	75	3	201	24	23	15	36	1.94
1083595--1084144	158	3.5	158	85	3	698	29	22	10	37	1.88
1083595--1084160	79	7.2	78	79	11	523	29	22	11	36	1.89
1090340--1090401	32	1.9	32	83	0	79	25	24	12	37	1.91
1090439--1091564	62	18.3	62	83	3	1171	25	22	18	33	1.97
1091681--1091803	44	2.8	43	85	2	167	21	24	13	41	1.88
1092598--1092654	20	2.8	20	84	10	71	28	15	10	45	1.79
1095011--1095357	79	4.4	79	76	8	307	31	20	10	37	1.87
1095183--1095240	28	2.0	30	86	10	84	24	25	12	37	1.90
1095071--1095357	79	3.6	79	79	9	309	31	19	10	39	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15