genome.fa.s107.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold107
Parameters: 2 7 7 80 10 50 1000
Length:  2327068

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  15  of  15  ( 1755 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2238966--2239454	157	3.1	158	80	7	542	40	12	10	35	1.78
2241162--2241218	20	2.8	20	83	0	69	38	14	15	31	1.87
2241204--2241232	13	2.2	13	100	0	58	31	17	13	37	1.89
2241220--2241272	20	2.6	20	81	3	61	37	15	18	28	1.91
2241324--2241349	13	2.0	13	100	0	52	30	15	15	38	1.88
2241304--2241371	33	2.1	32	88	2	100	35	16	14	33	1.89
2242958--2242989	9	3.6	9	95	0	55	40	3	34	21	1.69
2247972--2248010	20	1.9	20	89	5	60	20	48	25	5	1.70
2248034--2248429	164	2.5	159	81	9	459	53	8	10	28	1.63
2249897--2250342	84	5.3	83	74	2	399	35	13	31	19	1.91
2249897--2250344	167	2.7	167	80	1	522	35	13	31	19	1.91
2249809--2250117	41	7.4	42	68	6	146	36	13	31	18	1.90
2249639--2250347	167	4.2	167	76	7	521	35	13	30	20	1.92
2251585--2251749	55	3.1	54	86	6	219	12	18	14	55	1.69
2251585--2251749	51	3.1	52	86	5	215	12	18	14	55	1.69
2254321--2254547	97	2.3	96	85	7	296	31	12	26	29	1.93
2261072--2261105	18	1.9	17	88	5	50	52	0	29	17	1.45
2261082--2261269	61	3.1	60	79	9	211	40	11	22	25	1.88
2262219--2262267	24	2.0	24	100	0	98	36	16	0	46	1.47
2262478--2262502	13	1.9	13	100	0	50	32	16	16	36	1.90
2262567--2262676	52	2.1	53	84	1	150	36	15	17	30	1.91
2263066--2263132	35	1.9	34	90	3	107	34	10	23	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2264213--2264266	3	18.0	3	84	7	74	35	0	31	33	1.58
2267282--2267325	22	2.0	22	90	0	70	38	2	9	50	1.47
2268069--2268133	33	2.0	32	85	8	87	30	13	15	40	1.86
2268100--2268156	20	3.0	20	76	7	64	31	14	19	35	1.91
2269835--2269869	18	1.9	18	94	0	61	40	0	28	31	1.57
2271724--2271788	33	1.9	34	90	3	105	32	10	23	33	1.89
2286224--2286270	22	2.3	22	85	10	64	61	4	4	29	1.34
2286971--2287011	21	1.9	22	90	5	66	39	0	0	60	0.96
2287026--2287098	22	3.3	22	72	9	69	49	0	0	50	1.00
2287153--2287205	16	3.3	17	82	10	67	52	0	0	47	1.00
2287584--2287618	13	2.6	14	90	4	54	65	0	0	34	0.93
2287596--2287688	32	2.9	32	75	13	100	60	0	0	39	0.97
2287754--2287897	15	9.4	15	67	19	57	51	0	1	46	1.14
2287787--2287840	16	3.4	16	72	10	56	51	0	0	48	1.00
2287726--2287829	45	2.2	45	80	11	111	53	0	0	46	1.00
2287773--2287855	32	2.7	32	85	9	102	51	0	0	48	1.00
2287711--2287883	87	1.9	92	82	14	220	54	0	0	44	1.08
2287754--2287882	56	2.4	53	79	18	133	52	0	0	46	1.05
2288430--2288461	16	2.0	16	93	0	55	40	0	9	50	1.35
2290463--2290512	21	2.3	22	75	3	57	42	2	2	54	1.23
2291468--2291509	18	2.3	19	80	19	54	57	0	0	42	0.99
2291965--2292008	8	5.8	8	82	17	58	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2291966--2292008	14	2.9	15	80	20	54	48	0	0	51	1.00
2292421--2292448	3	9.3	3	100	0	56	32	0	32	35	1.58
2295171--2295226	24	2.4	25	88	8	82	48	0	5	46	1.25
2295176--2295228	25	2.2	25	86	3	81	43	0	5	50	1.25
2296431--2296501	27	2.6	27	84	6	81	47	23	4	23	1.69
2300996--2301066	27	2.6	28	86	2	90	49	21	4	25	1.67
2301283--2301339	14	4.2	14	70	17	57	64	0	0	35	0.93
2301299--2301362	20	3.1	22	67	17	64	60	0	1	37	1.06
2301278--2301362	40	2.2	40	93	2	145	60	0	1	38	1.05
2304099--2304147	3	16.3	3	100	0	98	32	0	0	67	0.91
2307495--2307531	16	2.4	16	83	16	51	56	5	0	37	1.22
2307495--2307547	27	2.0	28	82	14	67	54	3	0	41	1.18
2308389--2308431	2	21.5	2	82	0	50	46	2	4	46	1.36
2314268--2314345	39	2.0	39	100	0	156	53	5	7	33	1.51
2316041--2316084	15	2.8	16	82	10	54	36	0	0	63	0.95
2316275--2316299	9	2.8	9	100	0	50	60	0	0	40	0.97
2316275--2316320	11	4.6	10	84	10	51	63	0	0	36	0.95
2316339--2316372	2	17.0	2	100	0	68	50	0	0	50	1.00
2316893--2316941	18	2.8	18	74	17	50	34	0	0	65	0.93
2316831--2316918	32	2.8	30	74	17	90	44	0	1	54	1.07
2316861--2316930	23	3.0	23	76	19	65	42	0	0	57	0.99
2317564--2317596	12	2.8	12	90	4	50	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2318923--2318992	27	2.6	27	80	10	74	57	0	0	42	0.99
2318923--2318992	26	2.6	27	78	10	74	57	0	0	42	0.99
2319360--2319393	15	2.3	15	94	0	59	0	58	2	38	1.13
2320324--2320417	39	2.4	36	77	17	91	54	0	2	43	1.12
2323719--2323750	16	2.0	17	88	11	50	43	18	25	12	1.85
2325094--2325131	20	1.9	20	89	10	60	36	5	0	57	1.21
2325973--2326077	45	2.3	47	83	4	135	47	8	15	28	1.74
2326067--2326117	20	2.5	21	96	3	95	31	19	13	35	1.91
2326942--2326975	17	1.9	18	88	5	52	67	5	0	26	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15

The End!