genome.fa.s156.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold156
Parameters: 2 7 7 80 10 50 1000
Length:  2697547

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  10  of  14  ( 1602 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1914996--1915030	17	1.9	19	88	11	56	31	0	0	68	0.90
1925968--1926000	12	2.6	13	85	9	50	51	0	0	48	1.00
1926100--1926157	17	3.4	16	80	15	62	37	0	0	62	0.96
1926093--1926147	27	2.1	26	86	10	76	34	0	0	65	0.93
1926403--1926446	23	2.0	21	82	8	52	47	0	0	52	1.00
1926883--1926919	2	19.5	2	89	10	60	51	0	0	48	1.00
1927098--1927170	28	2.6	27	77	14	76	61	6	5	26	1.43
1927145--1927274	32	4.5	27	70	19	75	53	5	2	38	1.36
1931812--1931940	52	2.5	52	93	0	231	34	18	17	28	1.94
1936032--1936068	19	2.0	18	89	5	56	45	0	0	54	1.00
1936037--1936077	19	2.2	19	86	0	55	51	0	0	48	1.00
1936071--1936144	21	3.7	21	71	21	70	66	0	0	33	0.92
1936063--1936145	37	2.3	36	80	11	100	66	0	0	33	0.92
1936071--1936139	5	13.2	5	71	14	50	65	0	0	34	0.93
1936071--1936146	31	2.7	26	77	20	73	64	0	0	35	0.94
1936062--1936141	40	2.1	38	79	11	92	67	0	0	32	0.91
1936195--1936274	29	2.7	31	79	16	89	58	0	0	41	0.98
1936199--1936274	26	2.6	28	82	16	84	59	0	0	40	0.98
1936899--1937011	42	2.7	42	75	15	110	41	0	1	56	1.09
1939570--1939598	2	14.5	2	100	0	58	0	0	48	51	1.00
1940348--1940378	2	15.5	2	100	0	62	0	0	51	48	1.00
1946943--1947004	25	2.5	25	73	19	58	45	3	0	51	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1949953--1949993	3	13.7	3	100	0	82	0	31	0	68	0.90
1952261--1952300	21	2.0	21	90	5	64	20	27	27	25	1.99
1957615--1957651	2	18.5	2	100	0	74	0	48	0	51	1.00
1960141--1960174	2	17.0	2	100	0	68	50	0	0	50	1.00
1965088--1965129	5	8.0	5	84	10	57	61	0	0	38	0.96
1965090--1965137	11	4.5	11	85	12	64	60	0	0	39	0.97
1965131--1965168	16	2.3	17	82	17	53	52	0	2	44	1.14
1966265--1966306	15	2.8	15	82	7	50	54	0	0	45	0.99
1966842--1966891	26	1.9	26	91	0	82	60	0	0	40	0.97
1966853--1966905	23	2.3	23	83	6	63	56	1	1	39	1.21
1968541--1968570	15	1.9	16	93	6	53	23	0	0	76	0.78
1968630--1968671	13	3.3	14	84	15	56	66	0	0	33	0.92
1968633--1968745	39	2.7	42	77	10	108	61	1	1	35	1.17
1968633--1968811	19	8.7	20	68	21	77	59	1	3	36	1.21
1971187--1971215	2	14.5	2	100	0	58	48	51	0	0	1.00
1980501--1980529	12	2.4	12	100	0	58	44	13	17	24	1.85
1985499--1985540	19	2.4	19	84	11	54	33	0	0	66	0.92
1989220--1989248	2	14.5	2	100	0	58	48	0	0	51	1.00
1990229--1990264	18	2.1	16	90	10	54	38	0	0	61	0.96
1990731--1990771	21	2.0	21	90	9	66	56	2	2	39	1.26
1994641--1994761	57	2.1	57	98	0	233	17	28	13	41	1.87
1996905--1996937	2	16.5	2	100	0	66	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1997288--1997321	11	3.1	11	86	0	50	17	0	2	79	0.86
1997334--1997389	28	2.0	28	86	6	78	41	0	0	58	0.98
1997311--1997382	20	3.5	21	73	16	62	41	0	1	56	1.07
2001834--2001885	26	2.0	26	92	3	86	44	0	0	55	0.99
2010028--2010057	2	15.0	2	100	0	60	50	0	0	50	1.00
2018626--2018653	13	2.2	13	100	0	56	25	53	7	14	1.66
2028757--2028863	40	2.7	40	95	0	196	42	3	16	37	1.67
2030978--2031024	18	2.6	18	86	6	60	51	0	0	48	1.00
2030994--2031034	18	2.2	19	91	4	66	48	2	0	48	1.14
2032169--2032203	2	18.0	2	88	5	54	48	0	0	51	1.00
2034626--2034675	21	2.4	21	80	9	59	64	4	0	32	1.12
2035198--2035242	24	1.9	23	90	4	72	46	0	0	53	1.00
2037757--2037823	28	2.5	26	73	17	66	47	0	1	50	1.10
2037766--2037820	28	1.9	29	89	10	87	47	0	1	50	1.11
2047029--2047068	11	3.5	11	83	6	53	70	0	0	30	0.88
2047031--2047072	12	3.6	12	81	15	52	71	0	0	28	0.86
2049725--2049766	22	2.0	22	86	13	61	30	0	0	69	0.89
2050367--2050396	15	1.9	16	93	6	53	73	0	16	10	1.09
2051503--2051555	26	2.1	24	82	6	61	43	1	1	52	1.23
2051578--2051616	17	2.3	17	86	8	53	53	2	0	43	1.14
2053702--2053776	24	3.3	23	80	12	84	56	0	0	44	0.99
2053774--2053817	19	2.5	18	85	10	56	36	0	4	59	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2054245--2054355	54	2.1	54	100	0	222	36	14	17	32	1.90
2054943--2054986	20	2.3	20	84	7	56	34	0	2	63	1.07
2056147--2056185	16	2.4	16	91	0	60	51	12	0	35	1.40
2056365--2056395	16	2.0	16	93	6	55	41	0	0	58	0.98
2057331--2057364	15	2.2	16	89	5	52	32	0	5	61	1.20
2057525--2057573	18	2.7	18	82	14	64	24	4	0	71	1.03
2057941--2057989	21	2.3	22	79	10	57	40	0	0	59	0.98
2057964--2058011	13	3.6	13	80	8	53	41	0	2	56	1.11
2058176--2058222	19	2.5	19	100	0	94	55	0	0	44	0.99
2058162--2058221	19	2.7	24	73	26	76	56	0	0	43	0.99
2058590--2058650	13	4.8	12	75	15	52	50	1	1	45	1.21
2059069--2059121	20	2.7	20	71	11	54	54	1	0	43	1.11
2064654--2064769	58	2.0	59	91	3	189	29	7	21	41	1.81
2065289--2065337	2	26.0	2	84	12	68	53	2	0	44	1.12
2065435--2065477	23	2.0	21	86	9	59	13	9	4	72	1.26
2066136--2066178	20	2.2	20	83	8	52	13	9	2	74	1.16
2068521--2068580	24	2.6	22	78	19	61	41	0	3	55	1.16
2069059--2069118	27	2.2	27	82	5	68	53	1	1	43	1.20
2069498--2069535	20	1.9	20	89	10	60	57	0	0	42	0.98
2070426--2070490	20	3.4	19	81	8	69	47	0	0	52	1.00
2070593--2070649	30	1.9	30	89	7	89	64	0	5	29	1.15
2070756--2070850	32	3.0	32	76	14	90	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2073401--2073485	14	5.2	16	72	20	52	41	0	1	57	1.06
2073419--2073517	20	5.3	20	69	26	58	43	0	0	56	0.99
2073416--2073574	18	8.6	18	67	15	58	40	1	0	58	1.06
2073429--2073498	27	2.5	27	83	4	77	41	0	0	58	0.98
2073429--2073517	47	1.9	43	84	13	115	43	0	0	56	0.99
2073428--2073547	32	3.7	32	77	12	102	44	1	0	54	1.10
2073468--2073547	32	2.4	32	85	4	106	45	2	0	52	1.14
2074441--2074481	2	20.5	2	100	0	82	51	0	0	48	1.00
2074628--2074677	20	2.5	20	83	3	55	60	2	4	34	1.27
2074640--2074677	20	1.9	20	88	0	58	57	2	2	36	1.26
2074788--2074818	2	15.5	2	93	0	53	51	0	0	48	1.00
2075983--2076043	31	2.0	31	96	0	113	22	13	4	59	1.53
2076103--2076142	20	2.0	20	85	9	55	27	5	0	67	1.11
2087939--2088014	27	2.8	27	83	0	98	51	21	5	22	1.67
2091085--2091130	24	1.9	24	86	0	65	41	28	6	23	1.79
2091125--2091188	28	2.3	28	89	5	94	53	18	7	20	1.69
2091135--2091189	28	2.0	28	96	0	101	49	20	10	20	1.78
2095639--2095684	24	1.9	24	86	0	65	41	28	6	23	1.79
2095679--2095742	28	2.3	28	86	5	85	53	17	7	21	1.69
2097466--2097502	15	2.6	14	87	8	56	64	0	0	35	0.94
2097808--2097856	19	2.5	20	80	12	57	46	0	0	53	1.00
2097819--2097859	15	2.5	17	81	18	52	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2098024--2098082	19	3.2	20	74	11	54	64	3	3	28	1.26
2098075--2098113	21	1.9	20	85	15	53	69	2	0	28	1.02
2098295--2098370	14	5.2	14	67	9	53	50	3	1	44	1.29
2098791--2098957	56	3.0	55	91	1	262	34	2	5	56	1.37
2098868--2098904	19	2.0	19	89	5	58	27	2	0	70	1.01
2099234--2099285	15	3.1	17	78	13	63	55	0	0	44	0.99
2099753--2099778	5	5.2	5	100	0	52	19	0	0	80	0.71
2100070--2100094	13	1.9	13	100	0	50	24	4	0	72	1.02
2101452--2101517	32	2.0	33	88	2	98	54	1	0	43	1.09
2109054--2109096	10	4.1	10	78	21	52	55	2	0	41	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14