genome.fa.s156.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold156
Parameters: 2 7 7 80 10 50 1000
Length:  2697547

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  7  of  14  ( 1602 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1408578--1408611	3	11.3	3	100	0	68	67	0	0	32	0.91
1409066--1409095	3	10.0	3	100	0	60	33	0	0	66	0.92
1410549--1410584	12	3.0	12	91	0	54	25	2	38	33	1.70
1412465--1412500	2	18.0	2	100	0	72	50	0	0	50	1.00
1414650--1414685	2	18.0	2	100	0	72	50	0	0	50	1.00
1416057--1416089	2	16.5	2	100	0	66	51	0	0	48	1.00
1416274--1416335	31	2.0	31	100	0	124	32	6	12	48	1.67
1418303--1418349	12	3.8	12	85	2	67	55	0	0	44	0.99
1418704--1418751	19	2.6	18	77	9	51	54	0	4	41	1.20
1419189--1419226	20	2.0	20	89	5	60	52	0	0	47	1.00
1419516--1419551	16	2.2	16	90	5	54	44	0	0	55	0.99
1428584--1428662	18	4.6	16	71	21	54	44	1	0	54	1.08
1428584--1428674	32	2.8	33	83	8	98	40	2	0	57	1.11
1429043--1429086	17	2.4	18	82	17	56	34	2	4	59	1.30
1430440--1430480	17	2.3	18	80	16	50	39	0	2	58	1.11
1430992--1431027	3	12.0	3	100	0	72	33	0	33	33	1.58
1432737--1432767	2	16.0	2	93	6	55	51	0	0	48	1.00
1434023--1434054	11	2.9	11	95	0	55	15	18	0	65	1.27
1435945--1436013	24	2.8	23	82	10	84	42	1	0	56	1.08
1438859--1438898	21	1.9	21	84	0	53	62	0	0	37	0.95
1440614--1440654	14	3.1	14	82	10	50	53	0	0	46	1.00
1440907--1440971	22	3.0	22	80	8	71	41	4	0	53	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1441616--1441657	21	2.0	20	86	4	57	54	0	0	45	0.99
1441742--1441796	22	2.5	23	77	11	62	41	3	1	52	1.29
1446812--1446863	26	2.1	26	82	10	65	61	5	1	30	1.30
1449484--1449530	22	2.0	22	84	12	58	36	6	2	55	1.37
1450078--1450102	13	1.9	13	100	0	50	84	0	16	0	0.63
1450191--1450230	3	13.3	3	100	0	80	67	0	0	32	0.91
1450479--1450511	2	16.5	2	100	0	66	51	0	0	48	1.00
1455167--1455215	24	2.0	24	100	0	98	38	16	20	24	1.92
1455755--1455799	23	2.0	23	82	8	56	51	0	2	46	1.13
1456830--1456882	15	3.4	15	75	10	61	41	11	1	45	1.51
1456977--1457088	38	3.0	37	78	3	134	37	16	16	30	1.90
1457931--1457965	15	2.3	15	85	14	54	51	0	0	48	1.00
1459660--1459695	13	2.8	13	91	8	56	47	0	5	47	1.25
1465582--1465890	50	6.2	50	92	0	494	29	18	21	30	1.97
1472368--1472424	20	2.7	22	71	17	59	38	0	0	61	0.96
1472368--1472426	22	2.8	23	73	17	65	38	0	0	61	0.96
1472429--1472496	30	2.4	29	79	15	79	41	0	2	55	1.15
1472462--1472503	19	2.2	19	83	8	50	33	0	0	66	0.92
1472499--1472553	18	2.9	19	81	13	60	43	0	1	54	1.10
1472528--1472567	18	2.2	18	90	0	62	50	0	2	47	1.14
1473227--1473260	16	2.1	17	88	5	52	26	17	0	55	1.42
1473744--1473801	16	3.6	16	72	9	55	15	18	22	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1473734--1473802	32	2.2	32	81	5	77	15	18	23	42	1.89
1474321--1474406	41	2.1	42	82	10	106	39	0	3	56	1.16
1474981--1475049	15	4.8	15	75	19	67	31	0	2	65	1.08
1474981--1475042	28	2.2	29	91	2	99	32	0	3	64	1.09
1475818--1475874	27	2.0	29	90	6	91	66	0	0	33	0.92
1477751--1477829	27	2.9	27	70	20	67	62	0	0	37	0.96
1477749--1477814	33	1.9	35	87	6	100	62	0	0	37	0.96
1477749--1477813	17	4.1	17	71	15	50	61	0	0	38	0.96
1477748--1477877	56	2.4	54	78	8	129	53	0	0	46	1.05
1479670--1479725	28	2.1	26	78	12	67	32	7	32	28	1.84
1480033--1480267	50	4.7	50	91	0	353	31	17	20	29	1.96
1484648--1484881	50	4.7	50	93	1	398	29	17	23	29	1.97
1484648--1484881	99	2.3	100	94	1	407	29	17	23	29	1.97
1487824--1487854	2	15.5	2	100	0	62	51	0	0	48	1.00
1488517--1488546	15	1.9	16	93	6	53	56	13	0	30	1.37
1489341--1489397	14	3.9	15	75	15	57	68	0	0	31	0.90
1489336--1489382	19	2.6	18	75	18	53	70	0	0	29	0.88
1490730--1490766	2	18.5	2	94	0	65	45	0	2	51	1.15
1492020--1492061	20	2.0	22	86	9	61	42	0	0	57	0.99
1492043--1492097	21	2.8	20	79	17	62	54	0	0	45	0.99
1492048--1492095	6	8.5	6	77	13	57	60	0	0	39	0.97
1492066--1492105	12	3.3	12	85	0	53	55	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1492179--1492238	21	2.8	21	77	22	63	43	1	0	55	1.10
1492194--1492231	10	3.4	11	85	14	51	44	2	0	52	1.14
1493287--1493384	37	2.6	36	82	3	115	31	29	18	20	1.96
1498683--1498785	42	2.4	42	84	10	122	39	0	1	57	1.16
1499461--1499521	31	2.0	31	83	0	77	31	0	8	60	1.26
1500718--1500816	51	1.9	51	89	0	153	44	22	17	16	1.86
1501336--1501377	20	2.1	20	90	0	66	50	7	2	40	1.43
1504639--1504688	25	2.0	24	82	17	59	70	4	2	24	1.15
1504673--1504775	49	2.1	49	85	8	140	55	3	4	35	1.40
1504699--1504754	10	5.5	10	76	16	53	57	1	1	39	1.20
1505523--1505563	2	20.5	2	100	0	82	48	0	0	51	1.00
1506404--1506451	17	2.7	18	83	9	62	60	0	2	37	1.09
1506507--1506562	26	2.2	24	81	12	60	44	3	0	51	1.18
1507278--1507302	13	1.9	13	100	0	50	44	8	0	48	1.32
1508490--1508528	13	2.9	13	84	3	51	61	0	0	38	0.96
1509125--1509149	7	3.6	7	100	0	50	28	12	0	60	1.32
1509320--1509402	38	2.2	39	91	4	134	37	15	2	44	1.60
1510431--1510482	17	2.9	18	75	16	54	61	0	1	36	1.07
1510417--1510482	17	3.9	15	75	23	51	66	0	1	31	1.01
1511748--1511908	86	1.9	86	94	0	286	30	15	22	31	1.95
1514939--1514993	15	3.7	15	78	9	58	47	1	1	49	1.23
1517240--1517313	26	2.7	27	78	17	82	36	0	1	62	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1517266--1517305	17	2.3	18	86	4	55	32	0	0	67	0.91
1518175--1518210	2	18.0	2	100	0	72	50	0	0	50	1.00
1519223--1519255	2	16.5	2	93	0	57	54	0	0	45	0.99
1519390--1519423	2	17.5	2	93	6	61	50	0	0	50	1.00
1522464--1522529	11	6.5	11	72	18	63	39	0	0	60	0.97
1522464--1522520	29	1.9	30	92	3	98	40	0	0	59	0.97
1522495--1522539	21	2.3	20	81	11	58	42	0	0	57	0.98
1523064--1523096	7	4.9	7	92	7	59	57	0	0	42	0.98
1523719--1523765	24	2.0	23	83	4	58	48	4	0	46	1.21
1524044--1524089	22	2.1	22	88	8	67	63	0	0	36	0.95
1524274--1524308	16	2.2	16	89	0	52	51	0	0	48	1.00
1530717--1530772	29	2.0	29	89	3	87	33	1	1	62	1.16
1530800--1530893	30	3.1	30	80	10	86	37	0	18	44	1.50
1531473--1531498	6	4.3	6	100	0	52	84	0	0	15	0.62
1531542--1531607	33	2.0	33	82	11	82	45	0	0	54	0.99
1532902--1532926	2	12.5	2	100	0	50	52	0	0	48	1.00
1533584--1533618	2	17.5	2	87	0	52	48	5	45	0	1.26
1533580--1533618	8	5.0	8	93	3	53	48	7	43	0	1.31
1533998--1534051	24	2.2	24	80	3	63	62	5	0	31	1.18
1535494--1535557	17	3.9	16	74	13	58	48	1	1	48	1.20
1535516--1535559	17	2.6	18	85	7	65	45	0	2	52	1.13
1535654--1535678	13	1.9	13	100	0	50	40	4	0	56	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1536280--1536305	2	13.0	2	100	0	52	50	0	0	50	1.00
1546335--1546360	2	13.0	2	100	0	52	50	0	0	50	1.00
1547647--1547702	16	3.6	16	85	4	71	35	1	1	60	1.17
1548645--1548669	2	12.5	2	100	0	50	48	0	0	52	1.00
1550230--1550290	28	2.3	26	80	8	68	42	4	1	50	1.33
1552302--1552373	3	24.0	3	94	0	117	68	0	1	30	0.99
1552569--1552602	5	6.8	5	93	0	59	85	0	14	0	0.60
1552953--1553001	23	2.1	23	84	0	62	48	4	2	44	1.33
1553103--1553139	2	18.5	2	88	0	56	43	2	2	51	1.30
1553280--1553322	22	2.0	23	81	9	54	55	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14