genome.fa.s156.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold156
Parameters: 2 7 7 80 10 50 1000
Length:  2697547

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  1  of  14  ( 1602 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97--135	19	2.0	20	85	5	53	46	38	12	2	1.56
216--14199	7	1892.9	7	73	19	7900	40	41	13	4	1.66
218--298	22	3.6	23	81	10	57	43	39	14	2	1.59
187--12027	29	390.8	30	69	23	1539	40	40	14	4	1.68
521--12035	95	119.6	95	70	21	1555	40	40	14	4	1.67
722--817	22	4.6	20	91	6	95	40	43	14	1	1.52
1489--1513	9	2.8	9	100	0	50	44	36	20	0	1.52
1539--1899	141	2.6	139	78	16	340	40	39	15	4	1.67
5038--5071	17	1.9	18	94	5	61	41	44	14	0	1.45
7340--7364	12	2.1	12	100	0	50	48	36	16	0	1.46
7579--7669	13	6.9	13	73	23	68	39	46	14	0	1.45
12060--12262	32	6.5	32	75	21	120	42	53	0	3	1.21
12054--13872	96	19.3	93	70	19	345	40	50	4	4	1.44
13111--13205	46	2.0	47	86	9	133	46	40	11	2	1.52
14219--14279	7	8.6	7	80	3	68	37	54	0	8	1.31
14280--14309	7	4.3	7	91	0	51	43	16	0	40	1.48
14278--14306	14	2.1	14	100	0	58	41	24	0	34	1.55
14739--14783	22	2.0	23	82	4	56	33	0	0	66	0.92
16191--16241	25	2.1	25	92	3	86	37	9	3	49	1.55
19314--19348	6	5.8	6	93	0	61	34	0	62	2	1.10
25254--25380	14	9.3	12	71	25	69	3	8	9	77	1.09
25271--25380	56	2.1	54	84	8	145	4	8	9	78	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25280--25355	26	2.8	27	77	18	77	2	9	9	78	1.04
25252--25340	42	2.1	41	85	6	117	4	8	8	77	1.11
25323--25366	16	2.9	15	86	6	54	0	9	11	79	0.93
25253--25361	41	2.6	40	83	12	132	3	8	9	78	1.06
26233--26325	30	3.1	30	85	0	123	32	23	13	30	1.94
32546--32579	14	2.4	14	90	0	50	44	41	0	14	1.45
32625--32679	21	2.7	21	83	13	78	36	40	0	23	1.55
32594--32673	14	5.8	13	68	20	56	37	37	0	25	1.56
32899--32944	20	2.2	20	88	3	65	45	39	2	13	1.55
34884--34908	12	2.1	12	100	0	50	28	16	0	56	1.41
42789--42828	2	20.0	2	100	0	80	50	0	0	50	1.00
42962--42991	2	15.5	2	93	6	53	46	0	0	53	1.00
43417--43442	4	6.5	4	100	0	52	0	23	23	53	1.46
43806--43833	4	7.0	4	100	0	56	50	25	0	25	1.50
50043--50228	31	6.0	31	86	5	229	26	16	22	33	1.95
51069--51107	11	3.5	11	96	0	69	71	0	0	28	0.86
51064--51108	11	4.2	11	91	2	65	66	0	0	33	0.92
51158--51203	16	2.9	16	90	0	74	58	0	0	41	0.98
51688--51712	6	4.2	6	100	0	50	36	0	0	64	0.94
51811--51846	18	1.9	19	88	5	56	55	8	0	36	1.30
52433--52488	2	28.0	2	85	0	76	50	3	1	44	1.29
57619--57652	18	1.9	18	94	5	61	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57619--57666	15	2.9	17	85	11	57	29	0	0	70	0.87
57620--57677	18	3.0	19	75	17	57	31	0	0	68	0.89
57715--57771	28	1.9	31	86	10	84	45	8	10	35	1.70
62778--62811	18	1.9	18	94	5	61	29	0	0	70	0.87
62778--62825	15	2.9	17	85	11	57	29	0	0	70	0.87
62779--62836	18	3.0	19	75	17	57	31	0	0	68	0.89
64604--64639	3	12.0	3	100	0	72	66	0	0	33	0.92
70143--70228	40	2.1	43	85	10	117	41	2	3	52	1.31
70952--71000	24	2.0	24	88	7	73	57	2	2	38	1.22
71509--71554	3	15.3	3	95	0	83	30	0	0	69	0.89
72036--72074	11	3.5	11	82	3	51	53	0	0	46	1.00
72074--72112	20	2.0	20	84	0	51	58	0	0	41	0.98
72590--72629	3	13.3	3	100	0	80	35	0	0	65	0.93
73582--73730	34	4.4	33	76	5	129	42	28	6	21	1.78
73582--73735	67	2.3	68	86	1	211	43	28	6	21	1.77
73706--73752	22	2.1	22	92	0	76	48	27	8	14	1.73
77752--77802	19	2.7	19	87	3	59	33	19	19	27	1.96
77768--77820	19	2.8	19	91	0	79	35	13	18	32	1.90
78125--78337	34	6.3	34	77	0	192	43	21	5	29	1.75
78128--78337	68	3.1	68	83	0	258	43	20	5	30	1.75
78584--78624	6	6.8	6	94	0	73	31	17	34	17	1.93
78642--78669	6	4.7	6	100	0	56	17	46	0	35	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90190--90267	34	2.3	34	81	0	93	28	3	23	44	1.70
94484--94601	34	3.5	34	86	0	173	23	6	27	42	1.79
95465--95500	7	5.1	7	96	0	63	47	11	0	41	1.39
95469--95517	14	3.6	14	86	5	55	46	6	0	46	1.27
95587--95642	24	2.3	24	76	11	62	44	0	0	55	0.99
96100--96309	115	1.8	115	84	4	291	50	6	12	30	1.66
100121--100161	22	2.0	20	85	9	55	21	0	2	75	0.92
100375--100410	15	2.4	15	85	0	54	33	0	0	66	0.92
101596--101640	2	22.5	2	100	0	90	51	0	0	48	1.00
102411--102444	14	2.5	14	90	4	52	23	0	20	55	1.43
106603--106648	2	22.5	2	86	4	65	43	0	6	50	1.28
107635--107661	12	2.2	12	100	0	54	18	25	33	22	1.97
110040--110079	12	3.1	13	85	10	55	55	0	0	45	0.99
110075--110133	25	2.5	24	77	5	75	35	5	16	42	1.71
111271--111344	32	2.3	31	78	17	80	35	2	9	52	1.48
111264--111344	15	5.2	16	66	10	51	35	2	8	53	1.45
111331--111367	16	2.3	16	90	0	56	27	10	16	45	1.80
111338--111376	16	2.4	16	95	0	69	23	10	17	48	1.78
111338--111389	16	3.2	16	86	0	50	28	9	15	46	1.77
115050--115078	2	14.5	2	100	0	58	48	51	0	0	1.00
119084--119609	260	2.0	260	100	0	1052	36	17	14	30	1.90
122059--122083	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122213--122237	2	12.5	2	100	0	50	52	0	48	0	1.00
123728--123757	15	1.9	16	93	6	53	80	13	0	6	0.91
129047--129092	21	2.1	22	84	11	60	52	0	4	43	1.21
129104--129142	13	3.0	13	82	10	53	43	0	2	53	1.14
129154--129216	33	1.9	33	83	0	81	50	4	0	44	1.23
130396--130443	22	2.2	22	92	0	78	33	2	8	56	1.41
133073--133317	103	2.3	105	80	8	250	44	3	6	45	1.46
133967--134007	16	2.6	16	85	14	66	0	14	0	85	0.60
135905--135937	5	6.8	5	86	6	50	39	21	0	39	1.53
136573--136601	2	14.5	2	100	0	58	48	0	0	51	1.00
137590--137625	2	18.5	2	94	5	65	47	0	0	52	1.00
142402--142434	2	16.5	2	100	0	66	48	0	0	51	1.00
147280--147305	2	13.0	2	100	0	52	50	0	0	50	1.00
157806--157839	2	17.0	2	93	0	59	2	0	47	50	1.16
158540--158569	2	15.0	2	100	0	60	50	0	0	50	1.00
160348--160373	2	13.0	2	100	0	52	50	0	0	50	1.00
160569--160595	4	6.8	4	100	0	54	25	0	22	51	1.48
161254--161285	6	5.3	6	96	0	55	0	56	31	12	1.37
166070--166099	7	4.3	7	91	0	51	43	3	13	40	1.60
169827--169853	4	6.8	4	100	0	54	0	25	25	48	1.52
170084--170114	12	2.6	12	100	0	62	77	0	22	0	0.77
170078--170112	18	1.9	18	88	0	52	80	0	20	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177979--178012	2	17.0	2	100	0	68	50	0	0	50	1.00
178667--178701	2	17.5	2	100	0	70	48	0	0	51	1.00
182894--182936	2	21.5	2	85	0	59	44	4	51	0	1.22
183288--183321	2	17.0	2	100	0	68	50	0	0	50	1.00
187392--187422	2	15.5	2	100	0	62	48	0	0	51	1.00
188235--188266	2	16.0	2	100	0	64	50	0	0	50	1.00
191375--191411	12	3.1	12	92	0	56	43	2	35	18	1.65
206933--206964	2	16.0	2	100	0	64	50	0	50	0	1.00
208071--208097	2	13.5	2	100	0	54	48	0	0	51	1.00
208471--208505	19	1.9	17	88	11	52	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14