genome.fa.s156.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold156
Parameters: 2 7 7 80 10 50 1000
Length:  2697547

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  5  of  14  ( 1602 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
935111--935144	2	17.0	2	100	0	68	50	0	0	50	1.00
944558--944584	2	13.5	2	100	0	54	48	0	0	51	1.00
951109--951136	14	2.0	14	100	0	56	14	14	14	57	1.66
952805--952881	4	19.5	4	89	2	102	42	0	6	50	1.28
952805--952881	6	13.0	6	87	1	102	42	0	6	50	1.28
956401--956458	2	29.0	2	100	0	116	50	0	0	50	1.00
957609--957633	13	1.9	13	100	0	50	32	0	0	68	0.90
957636--957674	20	2.0	20	84	0	51	41	0	2	56	1.13
957674--957727	19	2.7	19	81	13	56	44	0	0	55	0.99
957687--957727	21	2.0	20	86	13	57	39	0	0	60	0.96
957674--957724	21	2.5	20	79	14	52	45	0	0	54	0.99
959227--959262	3	11.7	3	88	5	54	33	0	0	66	0.92
959225--959261	13	2.9	13	92	4	58	35	0	0	64	0.94
959904--959936	17	2.0	17	88	5	50	33	0	0	66	0.92
959877--959958	38	2.2	36	80	18	89	32	1	1	64	1.09
960173--960218	18	2.6	18	86	13	60	56	0	0	43	0.99
960192--960230	14	2.8	13	84	7	51	51	0	0	48	1.00
960179--960229	18	2.9	18	85	8	61	54	0	0	45	0.99
960360--960401	22	2.0	21	85	4	57	52	0	0	47	1.00
960463--960499	10	3.8	10	82	17	51	51	0	0	48	1.00
960496--960529	16	2.1	16	88	0	50	64	0	0	35	0.94
963447--963488	22	1.9	22	90	9	68	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
963459--963527	36	1.9	36	82	5	86	50	0	0	49	1.00
967540--967569	13	2.2	14	94	5	53	53	0	0	46	1.00
967734--967783	22	2.2	23	82	3	57	50	0	0	50	1.00
968432--968501	36	2.0	35	83	13	90	52	0	0	47	1.00
969029--969068	16	2.5	17	84	12	57	65	0	5	30	1.14
969124--969163	20	2.0	20	85	4	55	42	0	5	52	1.23
969639--969709	34	2.1	33	84	7	90	47	1	0	50	1.09
969629--969726	34	3.1	32	74	17	89	47	1	0	51	1.07
969692--969792	49	2.0	49	80	12	109	49	0	0	50	1.00
969704--969807	49	2.1	52	82	8	126	54	0	0	45	0.99
980214--980246	2	16.5	2	100	0	66	51	0	0	48	1.00
981095--981170	30	2.5	30	93	0	125	53	0	2	43	1.14
981647--981672	2	13.0	2	100	0	52	50	0	0	50	1.00
982637--982666	8	3.9	8	91	8	53	26	0	0	73	0.84
982637--982671	15	2.4	14	95	4	61	28	0	0	71	0.86
983582--983632	20	2.6	19	74	20	50	49	3	0	47	1.20
983918--984057	27	4.8	30	72	18	98	60	0	0	39	0.97
983917--983962	19	2.4	18	86	13	58	65	0	0	34	0.93
983918--984018	10	10.0	10	68	12	55	61	0	0	38	0.96
983949--984031	26	3.3	26	77	15	77	56	0	0	43	0.99
983930--984042	60	1.9	60	83	10	151	58	0	0	41	0.98
984024--984057	15	2.3	15	90	5	52	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
984335--984408	9	8.7	9	75	18	61	35	1	0	63	1.03
984391--984428	19	2.0	19	94	0	67	44	0	0	55	0.99
984339--984439	15	7.2	15	74	21	69	39	0	0	59	1.04
984339--984528	13	13.8	13	72	24	83	39	0	1	58	1.09
984487--984528	11	3.7	11	82	17	59	30	0	0	69	0.89
984352--984508	30	5.4	30	68	17	84	40	0	1	57	1.11
984481--984539	23	2.6	22	79	12	66	33	0	1	64	1.04
986249--986477	108	2.1	108	96	0	422	23	21	22	32	1.98
987506--987530	3	8.3	3	100	0	50	32	0	32	36	1.58
991652--991681	14	2.1	14	93	0	51	43	0	0	56	0.99
991654--991688	18	1.9	18	94	0	61	42	0	0	57	0.99
991662--991748	27	3.1	29	75	14	67	47	3	1	48	1.26
992123--992152	3	10.0	3	100	0	60	66	0	33	0	0.92
994226--994283	26	2.2	27	78	12	66	56	20	8	13	1.63
1010224--1010673	225	2.0	225	98	0	864	36	16	16	31	1.91
1012606--1012640	18	1.9	18	88	11	54	31	2	0	65	1.07
1013062--1013130	36	1.9	35	85	8	95	50	0	0	49	1.00
1015037--1015065	2	14.5	2	100	0	58	48	0	0	51	1.00
1016115--1016225	21	5.2	21	72	15	84	35	0	0	63	1.00
1016123--1016207	18	4.6	18	72	20	61	31	0	1	67	0.99
1016161--1016207	20	2.3	20	86	10	69	27	0	2	70	0.99
1016125--1016210	11	8.1	11	67	15	56	31	0	1	67	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1017098--1017136	9	4.4	9	96	3	71	58	0	0	41	0.98
1017186--1017227	15	2.6	16	92	7	68	54	2	7	35	1.41
1017186--1017238	15	3.5	15	87	7	54	56	1	5	35	1.34
1027377--1027407	15	2.1	15	100	0	62	25	12	12	48	1.77
1029856--1029937	32	2.5	32	84	7	103	57	14	2	25	1.50
1029884--1029952	33	2.1	33	86	10	97	57	17	4	20	1.56
1031924--1031953	2	15.0	2	92	0	51	53	0	46	0	1.00
1036248--1036281	14	2.4	14	95	0	59	0	67	0	32	0.91
1038002--1038063	20	3.2	21	77	22	57	64	0	0	35	0.94
1038001--1038064	9	7.1	9	71	11	51	62	0	0	37	0.95
1038092--1038157	17	4.0	17	67	20	50	54	0	0	45	0.99
1038004--1038181	93	1.9	93	80	10	207	53	0	0	45	1.08
1038883--1038935	22	2.5	22	84	9	65	41	0	0	58	0.98
1039876--1039933	28	2.1	27	87	9	82	48	0	0	51	1.00
1043000--1043030	2	15.5	2	100	0	62	51	0	0	48	1.00
1043309--1043333	2	12.5	2	100	0	50	48	0	0	52	1.00
1043333--1043357	2	12.5	2	100	0	50	0	0	48	52	1.00
1043725--1043771	24	1.9	24	87	12	69	53	8	4	34	1.51
1044663--1044693	2	15.5	2	100	0	62	48	0	0	51	1.00
1044883--1044907	13	1.9	13	100	0	50	52	0	0	48	1.00
1045913--1045945	2	17.0	2	87	6	50	48	3	0	48	1.17
1049373--1049400	4	7.0	4	100	0	56	75	0	0	25	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1049739--1049778	20	2.0	21	90	5	64	40	2	5	52	1.37
1056697--1056724	12	2.3	12	100	0	56	0	14	17	67	1.22
1060617--1060704	13	5.9	16	68	18	57	47	2	1	48	1.21
1060941--1060973	14	2.3	15	94	5	59	36	0	0	63	0.95
1077070--1077095	13	2.0	13	100	0	52	38	15	15	30	1.88
1083203--1083251	14	3.4	14	77	5	53	34	2	0	63	1.06
1094087--1094137	24	2.1	25	82	10	61	43	0	5	50	1.26
1094492--1094535	5	8.4	5	90	5	61	38	0	0	61	0.96
1095041--1095110	29	2.5	30	73	19	69	51	4	2	41	1.36
1104902--1104930	2	14.5	2	100	0	58	48	0	0	51	1.00
1105700--1105761	29	2.0	32	81	9	76	51	0	1	46	1.10
1118200--1118236	19	1.9	19	94	0	65	40	0	2	56	1.13
1121181--1121215	2	18.0	2	94	5	63	48	0	0	51	1.00
1121392--1121418	5	5.4	5	100	0	54	40	0	0	59	0.98
1122674--1122718	24	1.9	23	86	4	63	40	0	6	53	1.27
1122681--1122718	11	3.2	12	81	11	51	42	0	7	50	1.31
1123428--1123486	29	2.0	30	83	3	75	69	1	0	28	0.98
1123477--1123514	13	3.1	12	82	17	51	57	0	0	42	0.98
1123501--1123546	19	2.3	21	75	14	53	63	0	2	34	1.07
1123825--1123887	31	2.0	31	93	0	108	42	19	15	22	1.88
1124288--1124336	17	3.0	17	79	5	57	53	0	0	46	1.00
1124265--1124316	21	2.4	21	87	9	70	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1124265--1124322	22	2.7	22	80	17	68	46	0	0	53	1.00
1125906--1125965	22	2.7	23	76	5	61	35	0	13	51	1.41
1128612--1128707	46	2.1	46	100	0	192	51	8	8	32	1.62
1129885--1129949	20	3.7	18	71	15	55	61	3	0	35	1.12
1130739--1130807	22	3.0	22	79	14	68	17	5	13	63	1.47
1132195--1132233	17	2.3	17	81	0	51	43	0	0	56	0.99
1132344--1132401	20	2.8	21	78	5	64	58	0	0	41	0.98
1132696--1132724	6	4.8	6	100	0	58	17	65	17	0	1.27
1134425--1134470	16	3.0	15	87	9	58	63	0	0	36	0.95
1137795--1137824	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14