genome.fa.s156.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold156
Parameters: 2 7 7 80 10 50 1000
Length:  2697547

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  3  of  14  ( 1602 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475426--475504	17	4.4	17	69	17	52	56	0	0	43	0.99
475421--475518	15	6.1	18	70	21	67	57	0	0	42	0.99
476212--476273	27	2.3	27	78	10	65	58	0	0	41	0.98
477346--477384	5	8.0	5	82	5	53	41	0	0	58	0.98
477349--477390	20	2.1	20	86	0	57	50	0	0	50	1.00
477351--477421	15	4.6	16	82	6	60	40	0	0	59	0.98
477673--477699	3	9.0	3	100	0	54	66	0	0	33	0.92
483960--483988	2	14.5	2	100	0	58	51	0	0	48	1.00
488414--488442	2	15.0	2	92	7	51	48	0	0	51	1.00
492310--492343	14	2.5	14	90	4	52	35	0	0	64	0.94
496270--496323	20	2.7	20	75	11	56	20	1	12	64	1.36
508434--508746	163	1.9	163	96	0	572	34	7	17	39	1.79
508709--508777	26	2.6	27	86	4	95	28	5	18	46	1.72
508735--508800	24	2.6	25	85	4	80	27	7	19	45	1.77
513149--513229	26	3.0	27	85	7	94	25	7	18	48	1.74
513156--513251	26	3.7	26	81	4	88	26	5	21	46	1.72
528986--529018	2	16.5	2	100	0	66	48	0	0	51	1.00
529605--529767	79	2.1	79	92	0	272	41	14	17	26	1.88
534617--534670	24	2.2	25	78	21	62	61	0	0	38	0.96
534626--534671	21	2.0	24	88	12	71	60	0	0	39	0.97
534614--534698	18	4.6	18	73	12	66	57	2	0	40	1.11
534843--534869	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537550--537593	23	1.9	23	90	0	70	54	0	0	45	0.99
538472--538507	3	12.0	3	100	0	72	33	0	0	66	0.92
539268--539322	17	3.1	17	75	10	56	52	0	0	47	1.00
540127--540182	26	2.0	28	83	10	71	46	0	0	53	1.00
555565--555598	3	11.3	3	100	0	68	67	0	0	32	0.91
563573--563618	2	23.0	2	100	0	92	50	0	0	50	1.00
567978--568004	13	2.1	13	100	0	54	25	0	14	59	1.36
568566--568626	30	2.1	29	96	3	113	45	13	24	16	1.83
570634--570748	54	2.1	54	85	6	153	13	20	38	26	1.91
570643--570764	54	2.3	54	83	8	142	12	24	34	28	1.92
575980--576018	3	13.0	3	100	0	78	66	0	0	33	0.92
576980--577025	3	15.3	3	100	0	92	67	0	0	32	0.91
577394--577429	2	18.0	2	100	0	72	50	0	0	50	1.00
577482--577527	20	2.3	20	92	3	76	60	0	0	39	0.97
577483--577562	20	4.4	19	73	20	73	55	0	0	45	0.99
577804--577832	3	9.7	3	100	0	58	0	34	0	65	0.93
580644--580676	2	16.5	2	100	0	66	48	0	0	51	1.00
585962--586003	10	4.1	10	85	11	50	73	0	0	26	0.83
600453--600485	2	16.5	2	100	0	66	48	0	51	0	1.00
601415--601446	16	2.0	16	93	0	55	12	40	0	46	1.42
607238--607272	18	2.0	17	88	5	52	62	5	5	25	1.40
614683--614750	4	16.8	4	76	19	61	77	1	20	0	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
614683--614751	24	2.8	25	84	10	88	78	1	20	0	0.83
614683--614754	17	4.2	17	73	19	69	79	1	19	0	0.81
614683--614754	20	3.5	20	76	16	76	79	1	19	0	0.81
614755--614812	24	2.4	23	85	8	71	36	0	0	63	0.94
614760--614857	37	2.8	33	82	13	110	36	2	0	61	1.08
615168--615224	18	3.2	18	79	16	66	77	0	21	1	0.86
615178--615226	20	2.4	19	83	16	62	79	0	18	2	0.83
614703--615597	478	1.9	465	81	6	1070	38	5	8	47	1.57
615647--615679	16	2.1	16	94	0	57	84	0	15	0	0.61
615646--615698	21	2.5	22	78	6	63	77	0	20	1	0.87
614703--615780	478	2.2	476	79	8	1059	39	5	9	45	1.59
615812--615859	12	3.9	12	78	13	53	25	2	2	70	1.09
616069--616101	16	2.0	17	94	5	59	72	0	0	27	0.85
616239--616275	15	2.4	16	90	4	58	83	0	13	2	0.74
616782--616822	17	2.5	17	84	7	59	43	0	0	56	0.99
617132--617181	26	1.9	26	84	8	66	52	0	0	48	1.00
620780--620806	2	13.5	2	100	0	54	51	0	0	48	1.00
631627--631674	21	2.2	22	85	10	64	54	0	0	45	0.99
637689--637736	16	2.9	17	84	6	64	2	8	4	85	0.80
637694--637734	21	2.0	21	85	9	57	2	7	2	87	0.70
638038--638102	30	2.2	29	81	8	78	53	0	1	44	1.09
639072--639096	2	12.5	2	100	0	50	52	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641298--641326	1	29.0	1	100	0	58	0	0	100	0	0.00
649398--649445	17	2.9	17	84	9	64	62	0	0	37	0.95
649404--649502	40	2.5	41	83	9	125	57	0	0	42	0.98
649426--649511	27	3.1	27	76	15	70	54	0	0	45	0.99
649426--649511	14	6.2	14	73	15	72	54	0	0	45	0.99
650525--650628	45	2.3	47	81	6	133	47	1	0	50	1.12
650642--650744	36	2.9	34	77	19	104	48	0	0	49	1.14
650969--651012	23	2.0	22	82	13	54	50	2	0	47	1.13
650994--651024	13	2.4	13	94	0	53	54	0	0	45	0.99
650949--651014	28	2.4	26	73	14	60	53	1	0	45	1.09
651229--651274	17	2.6	18	82	6	58	39	0	13	47	1.42
652738--652773	19	1.9	18	88	5	54	30	0	8	61	1.26
654190--654248	25	2.5	24	78	15	68	42	0	0	57	0.98
654297--654330	17	2.0	17	88	11	52	55	0	0	44	0.99
655808--655898	28	3.1	28	63	14	67	32	12	10	43	1.77
655808--655925	59	2.0	59	98	0	227	30	11	12	44	1.78
655826--655917	31	3.1	31	63	15	84	31	13	13	42	1.82
656729--656778	25	2.0	25	100	0	100	36	24	12	28	1.91
658717--658761	20	2.2	20	84	4	54	48	11	22	17	1.78
659519--659545	13	2.1	13	100	0	54	40	22	14	22	1.90
659815--659844	14	2.2	14	94	5	53	23	0	0	76	0.78
661127--661166	2	20.5	2	85	14	57	52	0	2	45	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
672719--672758	18	2.3	18	86	4	55	20	15	12	52	1.74
672889--673036	80	1.9	80	88	0	224	29	12	22	34	1.92
674776--674800	2	12.5	2	100	0	50	0	52	0	48	1.00
674800--674831	2	16.0	2	100	0	64	50	50	0	0	1.00
683542--683579	17	2.2	17	86	13	51	47	5	0	47	1.24
683870--683978	20	5.4	21	66	22	72	63	0	0	35	1.01
683870--683903	11	3.2	11	83	8	52	70	0	0	29	0.87
683886--684010	17	7.6	17	72	17	77	58	0	0	40	1.04
683870--683978	10	10.8	10	67	26	61	63	0	0	35	1.01
685994--686025	9	3.6	9	100	0	64	43	0	0	56	0.99
688620--688653	12	2.9	12	91	4	52	82	5	0	11	0.83
692051--692091	2	20.5	2	94	0	73	0	46	0	53	1.00
698536--698622	21	4.0	22	73	19	60	51	0	4	43	1.22
698599--698641	12	3.4	12	75	12	50	62	0	2	34	1.08
703859--703901	21	2.0	21	100	0	86	13	13	27	44	1.83
704330--704405	38	2.0	37	84	2	98	28	13	21	36	1.91
708066--708136	26	2.8	26	86	2	99	36	15	25	22	1.93
708675--708710	6	6.0	6	87	12	56	36	13	0	50	1.43
711951--711981	16	1.9	16	93	0	53	41	0	0	58	0.98
712825--712914	9	9.0	9	77	17	81	54	2	0	43	1.12
712825--712914	19	5.0	19	73	21	86	54	2	0	43	1.12
712792--712912	32	3.9	31	79	16	119	54	1	0	42	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712861--712903	21	2.0	23	90	9	72	58	0	0	41	0.98
713812--713850	2	19.5	2	89	0	60	43	2	2	51	1.29
719757--719801	2	22.5	2	100	0	90	51	0	0	48	1.00
719805--719832	2	14.0	2	100	0	56	50	0	50	0	1.00
722496--722532	12	3.0	12	92	4	56	43	0	0	56	0.99
723660--723688	3	9.7	3	100	0	58	31	0	0	68	0.89
728009--728041	2	16.5	2	100	0	66	51	0	0	48	1.00
730860--730905	2	23.0	2	100	0	92	50	0	0	50	1.00
731027--731062	2	18.0	2	100	0	72	50	0	0	50	1.00
731556--731616	26	2.4	26	80	2	70	32	22	8	36	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14