genome.fa.s156.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold156
Parameters: 2 7 7 80 10 50 1000
Length:  2697547

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1602 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208656--208708	27	1.9	27	84	3	70	56	1	0	41	1.10
209293--209324	3	10.7	3	100	0	64	31	0	0	68	0.90
209791--209815	4	6.2	4	100	0	50	24	0	0	76	0.80
221135--221173	2	19.5	2	100	0	78	48	0	0	51	1.00
222423--222476	6	8.8	6	85	4	54	61	7	31	0	1.24
222419--222476	12	4.8	12	80	4	62	58	8	32	0	1.28
223001--223032	2	16.0	2	93	0	55	53	0	0	46	1.00
223737--223766	14	2.1	14	100	0	60	40	13	6	40	1.71
223740--223770	14	2.2	14	94	0	53	35	16	3	45	1.63
231748--232949	28	42.5	28	82	6	562	25	15	31	27	1.96
231702--232343	142	4.3	145	77	11	545	21	16	30	31	1.95
232263--232944	27	24.9	27	84	4	753	29	14	31	23	1.95
234230--234303	22	3.4	22	71	17	73	8	12	8	71	1.30
234231--234306	23	3.4	23	73	12	86	9	10	7	72	1.29
234219--234293	37	2.0	36	82	10	89	6	10	9	73	1.25
235448--235883	217	2.0	217	98	0	845	18	18	28	34	1.95
241540--241593	20	2.7	20	100	0	108	40	9	20	29	1.83
244217--244245	6	4.8	6	100	0	58	34	13	0	51	1.42
245975--246011	2	18.5	2	100	0	74	51	0	0	48	1.00
248215--248241	2	13.5	2	100	0	54	51	0	0	48	1.00
250028--250590	280	2.0	277	98	1	1090	48	17	11	23	1.79
252093--252130	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261324--261356	17	1.9	17	88	11	50	57	18	15	9	1.63
265290--265328	2	19.5	2	100	0	78	51	0	48	0	1.00
268414--268439	13	2.0	13	100	0	52	30	15	15	38	1.88
269336--269366	16	1.9	16	100	0	62	70	0	6	22	1.09
269373--269429	21	2.7	21	100	0	114	31	10	21	36	1.87
269485--269552	19	3.9	19	78	21	85	35	11	14	38	1.83
269506--269530	13	1.9	13	100	0	50	36	16	16	32	1.90
269487--269549	32	2.0	32	96	0	117	34	12	15	36	1.86
269592--269617	13	2.0	13	100	0	52	30	15	15	38	1.88
269572--269638	33	2.0	33	88	0	98	25	14	16	43	1.86
272096--272168	27	2.7	27	87	6	94	23	34	21	20	1.97
272151--272321	51	3.3	51	79	4	198	29	26	11	32	1.92
272304--272385	28	2.9	28	82	7	96	24	31	17	26	1.97
275127--275165	13	3.0	13	92	0	69	38	12	15	33	1.85
277236--277266	15	2.1	15	93	0	53	12	22	16	48	1.80
279069--279113	21	2.1	21	88	8	65	22	17	4	55	1.60
281329--281354	13	2.0	13	100	0	52	30	15	15	38	1.88
283355--283395	21	1.9	22	90	5	66	43	14	17	24	1.86
284232--284360	52	2.5	52	93	0	231	27	18	18	34	1.95
285549--285573	3	8.3	3	100	0	50	68	0	0	32	0.90
285975--286045	27	2.6	27	86	6	90	23	7	22	46	1.76
288619--288663	20	2.1	21	84	8	56	28	17	31	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290548--290637	28	3.4	26	83	8	110	25	7	21	45	1.78
291528--291568	3	13.7	3	94	0	73	65	2	0	31	1.05
292285--292317	15	2.1	16	88	5	50	75	0	3	21	0.93
293087--293126	2	21.5	2	85	14	59	50	0	0	50	1.00
293281--293332	25	2.2	24	80	16	63	34	0	3	61	1.14
294582--294610	14	2.1	14	93	6	51	48	0	0	51	1.00
295317--295388	31	2.3	32	92	2	119	29	2	5	62	1.32
295470--295526	25	2.3	24	82	8	69	54	0	0	45	0.99
295490--295540	26	2.0	26	85	11	70	50	1	0	47	1.12
295505--295558	18	3.0	18	75	8	56	48	1	0	50	1.11
295734--295769	3	12.0	3	100	0	72	66	0	0	33	0.92
296259--296288	15	2.0	15	93	0	51	43	0	0	56	0.99
299050--299089	3	13.7	3	94	5	73	30	0	0	70	0.88
301969--302014	23	2.0	23	83	4	58	54	2	0	43	1.12
306429--306458	2	15.0	2	100	0	60	50	0	0	50	1.00
309426--309457	2	16.0	2	100	0	64	50	0	0	50	1.00
315985--316019	2	17.5	2	100	0	70	48	0	51	0	1.00
316401--316449	23	2.3	23	82	10	59	38	0	4	57	1.18
317263--317316	26	2.1	26	96	0	99	38	16	11	33	1.84
318537--318569	2	16.5	2	100	0	66	48	0	0	51	1.00
319121--319146	2	13.0	2	100	0	52	50	50	0	0	1.00
321035--321085	2	25.5	2	100	0	102	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324957--324986	3	10.0	3	100	0	60	33	0	0	66	0.92
326593--326639	25	1.9	24	86	4	67	48	4	12	34	1.61
327603--327636	6	5.8	6	93	6	61	88	0	0	11	0.52
327603--327636	17	2.0	17	100	0	68	88	0	0	11	0.52
333491--333540	24	2.1	24	85	7	66	14	52	4	30	1.59
345578--345611	2	17.0	2	100	0	68	50	0	0	50	1.00
367095--367410	174	1.8	174	86	5	469	24	30	14	30	1.95
369408--369447	20	2.1	19	90	4	62	10	7	2	80	1.00
371296--371501	109	1.9	109	85	4	290	29	22	15	32	1.94
383976--384000	2	12.5	2	100	0	50	0	52	0	48	1.00
384493--384601	53	2.1	52	92	1	182	43	5	4	46	1.47
385565--385625	20	3.0	20	76	4	61	57	4	1	36	1.30
387677--387717	20	2.0	20	100	0	82	39	24	4	31	1.76
389176--389217	2	21.0	2	95	0	75	52	0	0	47	1.00
396414--396530	45	2.6	44	82	9	139	14	41	12	31	1.84
398354--398391	6	6.3	6	90	0	58	21	13	31	34	1.91
401010--401044	3	11.7	3	100	0	70	31	0	0	68	0.90
401198--401230	2	16.0	2	93	6	57	48	0	3	48	1.17
401806--401863	28	2.1	28	90	0	89	39	1	3	55	1.27
401859--401940	24	3.4	23	69	16	60	45	1	1	52	1.16
401887--401991	21	5.1	21	67	17	69	42	0	0	56	1.06
402753--402807	11	5.5	10	74	21	53	58	0	1	40	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402751--402810	19	2.9	19	83	13	75	58	0	1	40	1.08
406230--406277	3	16.0	3	91	0	78	66	0	2	31	1.03
406662--406739	27	2.9	27	82	0	102	28	20	37	14	1.91
409512--409538	2	13.5	2	100	0	54	0	0	48	51	1.00
410205--410252	17	2.6	17	78	15	51	54	0	4	41	1.20
411457--411484	2	14.0	2	100	0	56	50	0	0	50	1.00
414624--414671	15	3.2	15	84	0	60	8	35	0	56	1.30
417315--417384	36	1.9	36	85	0	95	4	27	12	55	1.56
418624--418650	2	13.5	2	100	0	54	51	0	48	0	1.00
419535--419564	16	1.9	15	93	6	51	70	0	0	30	0.88
420206--420257	22	2.3	23	81	12	63	44	0	0	55	0.99
422300--422338	18	2.2	18	90	0	60	64	0	0	35	0.94
423807--423841	16	2.1	18	89	10	56	37	0	0	62	0.95
427571--427780	104	2.0	104	93	0	357	36	21	19	22	1.95
429309--429335	2	13.5	2	100	0	54	51	0	0	48	1.00
431785--431833	22	2.3	22	79	13	57	46	2	0	51	1.12
431800--431841	13	3.2	13	86	3	57	47	0	0	52	1.00
433078--433105	13	2.2	13	100	0	56	92	0	7	0	0.37
434565--434597	6	5.7	6	92	3	50	36	33	9	21	1.85
439528--439571	16	2.8	16	75	0	52	43	20	13	22	1.87
440635--440747	16	7.1	16	76	11	54	38	27	16	17	1.92
440684--440747	32	2.0	32	81	6	76	34	31	20	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442503--442549	21	2.2	21	96	0	85	34	6	19	40	1.77
444402--444443	21	2.0	21	100	0	84	19	33	9	38	1.84
459448--459484	2	18.5	2	100	0	74	0	48	0	51	1.00
460056--460096	20	2.0	20	86	9	57	36	4	9	48	1.58
460257--460281	2	12.5	2	100	0	50	48	0	0	52	1.00
460281--460317	2	18.5	2	100	0	74	0	0	48	51	1.00
468872--468906	2	17.5	2	93	0	61	48	2	0	48	1.16
469401--469456	18	3.1	17	73	19	51	57	1	1	39	1.20
474804--474828	2	12.5	2	100	0	50	0	48	0	52	1.00
475253--475300	18	2.5	20	78	21	59	39	2	0	58	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14