genome.fa.s156.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold156
Parameters: 2 7 7 80 10 50 1000
Length:  2697547

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  9  of  14  ( 1602 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1754652--1754701	24	2.0	24	85	11	66	44	2	0	54	1.11
1754719--1754759	17	2.3	18	80	12	50	48	0	0	51	1.00
1754735--1754777	21	2.2	21	84	12	56	55	0	0	44	0.99
1754735--1754786	21	2.5	22	81	6	54	61	0	0	38	0.96
1759954--1759995	22	2.0	22	95	4	77	4	19	9	66	1.38
1759961--1760005	22	2.0	22	82	0	54	4	24	11	60	1.49
1760296--1760349	25	2.2	26	90	6	85	3	20	18	57	1.55
1760571--1760659	22	3.9	22	74	22	85	29	2	1	67	1.10
1760575--1760611	11	3.5	10	89	10	56	27	0	0	72	0.84
1760665--1761073	212	1.9	213	96	0	757	35	13	17	33	1.89
1761257--1761357	27	3.9	27	79	3	109	47	20	7	23	1.76
1765423--1765515	27	3.6	27	82	4	102	46	20	7	25	1.77
1765445--1765523	27	2.9	27	84	0	104	45	20	8	25	1.79
1771429--1771510	41	2.0	41	85	4	112	41	18	17	23	1.90
1776744--1776805	11	5.5	11	78	5	61	38	0	0	61	0.96
1776733--1776826	22	4.2	22	76	14	77	45	0	0	54	0.99
1776733--1776805	22	3.3	22	82	5	85	42	0	0	57	0.98
1776756--1776873	47	2.5	46	75	17	118	41	0	0	58	0.98
1776789--1776879	48	1.9	47	84	8	123	40	1	0	58	1.05
1776927--1776974	20	2.3	21	75	13	55	58	6	0	35	1.23
1777020--1777087	22	3.0	22	72	14	66	50	0	0	50	1.00
1777518--1777564	24	1.9	25	82	4	60	46	2	2	48	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1783720--1783768	15	3.3	14	83	11	62	61	0	2	36	1.08
1784388--1784439	19	2.8	19	70	2	52	34	1	0	63	1.06
1784818--1784859	5	8.4	5	82	7	50	57	2	2	38	1.25
1785103--1785158	27	2.1	27	83	6	69	58	3	1	35	1.26
1785604--1785637	14	2.3	15	85	5	52	73	0	0	26	0.83
1785914--1785983	18	3.8	18	75	7	52	45	1	1	51	1.18
1787725--1787758	15	2.2	16	89	5	52	38	0	0	61	0.96
1788181--1788226	2	23.0	2	95	0	83	50	0	2	47	1.13
1788881--1788912	3	10.7	3	100	0	64	31	34	0	34	1.58
1789258--1789299	19	2.2	19	87	8	59	7	9	0	83	0.81
1789448--1789473	2	13.0	2	100	0	52	50	0	0	50	1.00
1790386--1790445	22	2.7	22	92	0	102	36	8	5	50	1.55
1790487--1790545	30	1.9	31	83	10	77	54	1	3	40	1.27
1791055--1791091	18	2.0	19	89	5	58	51	0	2	45	1.15
1791787--1791875	47	1.9	45	82	8	108	58	2	1	38	1.18
1792367--1792416	2	25.0	2	95	0	91	48	0	2	50	1.12
1793562--1793591	13	2.3	13	94	0	51	0	16	0	83	0.65
1793842--1793907	31	2.2	29	80	15	73	62	0	3	34	1.11
1797933--1797959	2	13.5	2	100	0	54	48	0	0	51	1.00
1798394--1798430	3	12.0	3	94	5	65	64	0	35	0	0.94
1799189--1799224	2	18.0	2	100	0	72	50	0	0	50	1.00
1800783--1800822	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1801559--1801595	2	18.5	2	100	0	74	51	0	48	0	1.00
1805338--1805405	21	3.4	20	74	10	68	48	1	1	48	1.19
1806506--1806555	25	2.0	25	92	0	82	38	8	28	26	1.84
1807531--1807561	2	15.5	2	100	0	62	48	0	0	51	1.00
1809939--1809963	2	12.5	2	100	0	50	52	0	48	0	1.00
1810664--1810695	13	2.4	14	90	10	50	65	0	0	34	0.93
1810677--1810732	18	3.3	18	79	16	66	55	0	0	44	0.99
1811298--1811331	16	2.1	17	88	5	52	58	0	0	41	0.98
1812517--1812558	2	21.0	2	95	0	75	47	2	0	50	1.14
1813670--1813704	5	6.6	5	90	9	52	40	20	20	20	1.92
1815543--1815573	16	1.9	16	93	0	53	51	0	3	45	1.17
1820404--1820700	147	2.0	146	92	1	497	50	19	10	19	1.76
1822570--1822622	25	2.1	25	82	6	63	43	0	1	54	1.11
1822551--1822618	30	2.2	32	85	15	90	47	0	1	51	1.09
1822602--1822641	14	3.0	13	86	13	55	40	0	0	60	0.97
1822967--1823023	18	3.4	17	77	15	64	59	0	0	40	0.97
1822966--1823023	17	3.4	18	77	22	63	58	0	0	41	0.98
1822967--1823036	17	4.2	17	76	20	58	58	1	0	40	1.07
1823017--1823080	29	2.2	29	83	8	76	59	7	1	31	1.35
1825963--1826004	3	14.0	3	100	0	84	66	0	0	33	0.92
1833915--1833966	19	2.7	20	81	6	70	50	0	0	50	1.00
1834483--1834535	20	2.5	20	84	6	61	52	5	0	41	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1834954--1835007	17	3.0	19	73	13	60	57	0	3	38	1.17
1835009--1835052	20	2.1	22	84	16	58	40	2	0	56	1.11
1835181--1835212	3	10.7	3	100	0	64	68	0	0	31	0.90
1838136--1838174	20	1.9	21	94	5	71	46	0	0	53	1.00
1838136--1838194	20	2.9	20	85	7	66	50	0	0	49	1.00
1838166--1838204	20	1.9	21	89	5	62	61	2	0	35	1.10
1839693--1839735	18	2.5	17	82	14	52	55	2	0	41	1.12
1841749--1841889	69	2.1	68	95	1	255	34	10	23	31	1.89
1842696--1842731	2	18.0	2	100	0	72	50	0	0	50	1.00
1843683--1843722	21	2.0	20	85	5	53	55	2	0	42	1.13
1847007--1847052	3	15.3	3	100	0	92	34	0	0	65	0.93
1848416--1848509	27	3.8	23	72	20	75	51	2	0	46	1.13
1848444--1848521	27	2.9	26	79	9	77	50	2	0	47	1.15
1856125--1856168	21	2.1	21	84	12	56	50	0	0	50	1.00
1856133--1856178	21	2.2	21	88	7	67	54	0	0	45	0.99
1856218--1856273	27	2.1	26	83	9	69	62	1	0	35	1.06
1856229--1856273	13	3.2	14	81	9	56	60	2	0	37	1.09
1856227--1856273	15	3.3	15	77	17	55	59	2	0	38	1.09
1856942--1856966	2	12.5	2	100	0	50	0	0	48	52	1.00
1857686--1857714	15	2.0	15	93	6	51	58	0	0	41	0.98
1857693--1857740	26	1.9	24	87	8	69	70	0	0	29	0.87
1861969--1862101	70	1.9	70	89	3	205	45	3	6	45	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1862802--1862835	17	2.1	17	88	5	52	38	0	0	61	0.96
1862792--1862852	26	2.3	26	85	0	77	47	0	0	52	1.00
1862852--1862892	14	3.1	14	86	6	50	56	0	0	43	0.99
1863067--1863115	21	2.4	21	83	10	57	69	2	0	28	1.00
1864391--1864429	2	20.0	2	94	5	71	48	0	0	51	1.00
1866401--1866434	2	17.0	2	100	0	68	50	0	0	50	1.00
1867635--1867667	12	2.8	12	90	9	50	78	0	3	18	0.87
1868130--1868183	19	2.8	19	75	8	56	55	0	0	44	0.99
1876206--1876244	13	3.1	13	85	3	53	58	2	0	38	1.12
1877694--1877718	13	1.9	13	100	0	50	52	0	0	48	1.00
1883140--1883183	20	2.1	21	84	12	56	68	2	0	29	1.02
1886946--1886971	13	2.0	13	100	0	52	53	0	0	46	1.00
1887088--1887136	3	16.3	3	87	8	73	34	0	4	61	1.15
1888514--1888592	26	3.2	23	75	18	70	50	2	0	46	1.14
1888537--1888604	26	2.6	26	83	6	84	52	1	0	45	1.09
1896088--1896136	13	3.5	13	75	20	53	65	0	0	34	0.93
1896087--1896135	15	3.3	15	82	0	71	67	0	0	32	0.91
1896087--1896156	30	2.3	30	87	5	95	64	1	0	34	1.03
1896212--1896255	21	2.1	21	84	12	56	50	0	0	50	1.00
1896220--1896265	21	2.2	21	88	7	67	54	0	0	45	0.99
1896303--1896336	17	1.9	18	94	5	61	76	2	0	20	0.92
1896331--1896383	26	2.0	28	85	7	74	56	3	0	39	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1897780--1897808	15	2.0	15	93	6	51	58	0	0	41	0.98
1897786--1897839	26	2.2	23	84	12	72	72	0	0	27	0.85
1902061--1902203	70	2.0	70	83	2	180	43	4	6	45	1.50
1902884--1902949	26	2.6	25	82	4	69	46	0	0	53	1.00
1902938--1902978	14	3.1	14	86	6	50	56	0	0	43	0.99
1903153--1903201	21	2.4	21	83	10	57	69	2	0	28	1.00
1904481--1904508	2	14.0	2	100	0	56	50	0	0	50	1.00
1907220--1907252	16	1.9	18	88	11	52	42	0	0	57	0.98
1909962--1909998	19	1.9	19	88	0	56	27	0	0	72	0.84
1914243--1914290	21	2.3	20	78	3	51	60	0	4	35	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14