genome.fa.s195.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold195
Parameters: 2 7 7 80 10 50 1000
Length:  1914327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  10  of  12  ( 1358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1529963--1529989	6	4.5	6	100	0	54	29	0	14	55	1.40
1530595--1531724	55	19.4	55	80	11	1165	26	20	26	26	1.99
1530595--1531725	117	9.7	116	89	5	1426	26	20	26	26	1.99
1531646--1531858	95	2.2	94	92	1	345	25	18	29	26	1.98
1545223--1545494	79	3.4	79	76	2	267	29	14	27	28	1.95
1545427--1546119	50	13.4	50	70	14	315	32	12	26	28	1.93
1545656--1545712	28	2.0	29	86	3	80	31	15	28	24	1.96
1545452--1546119	309	2.1	310	94	2	1171	32	12	26	28	1.92
1545452--1546128	106	6.5	102	67	16	295	32	12	26	28	1.92
1547032--1547070	18	2.3	18	86	8	55	15	28	23	33	1.95
1547066--1547173	43	2.5	43	92	0	180	10	23	36	30	1.88
1547065--1547203	43	3.2	41	82	11	156	9	23	36	30	1.86
1547519--1547650	26	5.1	26	96	0	237	12	26	8	53	1.66
1547670--1547715	19	2.3	20	92	7	76	17	0	0	82	0.67
1547668--1547716	21	2.3	23	80	20	70	16	0	0	83	0.64
1547669--1547718	8	6.1	8	79	11	57	18	0	0	82	0.68
1547669--1547718	20	2.4	21	87	12	77	18	0	0	82	0.68
1547789--1547815	6	4.5	6	100	0	54	29	0	14	55	1.40
1549324--1549348	13	1.9	13	100	0	50	32	16	16	36	1.90
1549336--1549387	20	2.6	20	87	6	70	42	15	15	26	1.87
1549439--1549463	13	1.9	13	100	0	50	32	16	16	36	1.90
1549419--1549486	33	2.1	33	88	2	102	35	17	14	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1552349--1552389	20	2.0	20	85	4	55	48	0	24	26	1.51
1552518--1552543	13	2.0	13	100	0	52	38	15	15	30	1.88
1558709--1558848	20	6.9	20	72	13	90	34	17	17	31	1.93
1558791--1558846	19	2.9	19	91	2	85	35	17	16	30	1.92
1558984--1559032	22	2.2	23	78	10	57	51	10	4	34	1.55
1571779--1571908	65	2.0	64	90	1	206	36	23	16	24	1.94
1572532--1572796	56	4.8	55	86	0	332	15	13	30	39	1.87
1572532--1572799	111	2.4	111	83	1	340	16	14	30	39	1.88
1572535--1572803	55	4.8	56	85	0	335	15	14	31	38	1.88
1573325--1573375	8	6.6	8	84	8	61	17	1	0	80	0.81
1573324--1573380	23	2.5	23	85	0	69	17	1	1	78	0.91
1573325--1573380	15	3.7	15	78	4	58	17	1	1	78	0.92
1581084--1582193	92	12.1	92	88	3	1470	31	17	24	26	1.97
1581326--1582134	43	18.0	41	70	14	271	31	17	24	26	1.97
1581680--1581748	22	3.2	22	64	25	56	33	14	23	28	1.94
1581084--1582193	275	4.0	276	87	3	1479	31	17	24	26	1.97
1581084--1582193	367	3.0	368	87	3	1499	31	17	24	26	1.97
1582047--1582115	22	3.2	22	64	32	58	36	17	21	24	1.95
1582184--1582536	34	10.9	33	74	13	288	36	11	31	20	1.88
1582211--1582534	95	3.4	93	78	8	292	37	10	31	20	1.87
1582443--1582588	27	5.0	27	75	14	121	33	13	30	23	1.92
1582438--1582565	61	2.1	61	91	0	202	38	10	29	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1582569--1582775	95	2.2	92	81	2	234	31	16	28	22	1.96
1582550--1582794	31	7.8	31	78	8	214	32	16	28	22	1.95
1583103--1583128	13	2.0	13	100	0	52	46	15	7	30	1.74
1598016--1598076	29	2.1	29	93	0	104	31	22	14	31	1.94
1598034--1598228	31	6.4	30	79	11	148	23	28	16	30	1.97
1598142--1598579	61	7.0	61	81	12	421	21	30	12	35	1.90
1598142--1598646	34	15.8	33	76	13	362	20	30	12	36	1.90
1598142--1598613	128	3.7	128	82	8	515	20	30	12	36	1.90
1598757--1599193	49	8.7	49	77	6	358	24	26	16	32	1.96
1598772--1599056	101	2.9	98	85	3	381	25	25	16	31	1.97
1598757--1599116	150	2.4	149	85	3	481	25	26	16	31	1.97
1598757--1599116	101	3.6	98	81	4	346	25	26	16	31	1.97
1604479--1604518	12	3.5	11	83	10	53	0	0	15	85	0.61
1604477--1604532	23	2.3	25	78	15	71	5	5	12	76	1.12
1614653--1614680	13	2.2	13	100	0	56	28	14	14	42	1.84
1614634--1614731	33	3.0	33	87	1	144	28	12	14	44	1.81
1614802--1614849	13	4.2	13	70	29	54	31	12	18	37	1.88
1614784--1614849	33	2.0	33	88	11	100	33	12	18	36	1.88
1616939--1616994	21	2.6	21	81	13	60	55	0	1	42	1.10
1624982--1625015	15	2.3	15	94	0	59	52	8	11	26	1.67
1625146--1625222	39	2.0	39	84	0	100	41	9	5	44	1.58
1625817--1625858	18	2.4	18	80	11	52	47	2	0	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1625900--1625932	15	2.2	15	94	0	57	39	6	3	51	1.42
1626025--1626070	16	2.8	16	81	15	58	50	0	0	50	1.00
1631964--1631994	13	2.4	13	100	0	62	45	19	22	12	1.84
1632920--1632950	13	2.4	13	94	0	53	41	12	12	32	1.81
1632999--1633046	19	2.5	20	86	3	62	39	14	12	33	1.84
1641329--1641378	23	2.1	24	82	10	59	42	22	8	28	1.81
1641794--1641824	13	2.4	13	94	0	53	38	9	16	35	1.81
1641869--1641921	19	2.7	20	79	2	63	37	13	15	33	1.86
1642673--1642713	21	2.0	21	85	9	57	31	7	19	41	1.79
1647156--1647223	31	2.2	31	84	10	86	51	17	8	22	1.72
1647186--1647237	16	3.3	16	77	17	56	51	17	7	23	1.70
1647169--1647221	15	3.5	14	76	16	52	50	18	7	22	1.72
1651442--1651508	33	2.0	33	88	0	98	34	11	13	40	1.81
1651462--1651486	13	1.9	13	100	0	50	36	16	16	32	1.90
1651549--1651573	13	1.9	13	100	0	50	32	16	16	36	1.90
1651582--1651709	52	2.5	52	94	3	224	33	17	17	30	1.94
1656485--1656510	13	2.0	13	100	0	52	30	15	15	38	1.88
1656465--1656528	32	2.0	33	90	3	103	28	14	15	42	1.86
1659646--1660317	165	4.2	164	77	11	593	50	9	11	29	1.69
1660201--1660226	10	2.6	10	100	0	52	61	0	19	19	1.35
1659740--1660344	155	3.8	158	77	10	554	49	9	10	30	1.68
1666813--1666838	3	8.7	3	100	0	52	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1666843--1666903	17	3.7	17	76	4	54	37	0	0	62	0.96
1666867--1666906	20	2.0	20	85	9	55	50	0	0	50	1.00
1666876--1666939	18	3.9	17	72	24	57	46	1	0	51	1.10
1667031--1667061	2	15.5	2	100	0	62	48	0	0	51	1.00
1667071--1667170	49	2.0	49	94	0	173	25	19	16	40	1.91
1671840--1671936	42	2.4	42	85	3	135	42	5	23	28	1.76
1672629--1672718	20	4.6	20	77	10	87	30	16	14	38	1.89
1672629--1672719	39	2.3	40	81	9	98	29	16	15	38	1.89
1672749--1672800	20	2.6	20	87	0	68	34	13	23	28	1.92
1672789--1672813	13	1.9	13	100	0	50	32	16	16	36	1.90
1677417--1677465	22	2.3	21	86	6	71	44	10	12	32	1.75
1680868--1680903	13	2.8	13	91	0	54	38	19	11	30	1.86
1681012--1681148	53	2.6	53	90	1	220	27	16	18	37	1.92
1681136--1681190	21	2.7	20	80	5	65	30	14	16	38	1.89
1681229--1681269	21	2.0	21	85	9	57	39	9	12	39	1.76
1682913--1682937	13	1.9	13	100	0	50	32	16	16	36	1.90
1684467--1684631	84	2.0	84	82	7	201	24	19	3	52	1.62
1685020--1685061	21	2.0	21	85	0	57	23	28	4	42	1.74
1686693--1686731	13	3.0	13	92	0	69	35	17	15	30	1.91
1686792--1686816	10	2.5	10	100	0	50	40	0	32	28	1.57
1686840--1686968	53	2.5	53	92	1	215	27	17	17	37	1.92
1687814--1687866	13	4.5	13	71	26	55	37	15	13	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1687814--1687882	33	2.1	33	86	5	95	37	18	13	30	1.89
1687910--1687967	19	3.1	18	85	11	80	32	15	15	36	1.89
1696597--1696661	33	2.0	33	87	6	96	36	16	12	33	1.87
1696693--1696752	20	3.0	20	82	7	86	35	15	13	36	1.86
1696692--1696748	19	2.9	19	87	5	87	35	14	14	36	1.86
1696714--1696776	32	1.9	33	90	3	101	39	12	15	31	1.85
1699476--1699530	20	2.7	20	83	8	67	38	12	16	32	1.86
1702441--1702545	27	3.8	27	79	6	104	23	32	17	26	1.96
1702521--1702899	32	11.8	34	76	12	182	21	27	12	38	1.90
1702494--1702798	27	9.8	30	73	16	214	22	28	13	35	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12