genome.fa.s195.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold195
Parameters: 2 7 7 80 10 50 1000
Length:  1914327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  3  of  12  ( 1358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335246--335321	12	6.9	11	80	15	70	39	0	48	11	1.40
335266--335326	9	7.1	9	74	10	65	42	0	44	13	1.43
335236--335326	33	2.8	30	77	12	76	43	0	45	10	1.39
335236--335354	42	2.8	42	93	0	202	42	0	46	10	1.39
335251--335335	12	7.7	12	76	16	53	42	0	44	12	1.43
335311--335357	18	2.6	18	83	6	51	42	0	46	10	1.38
335250--335360	21	5.5	18	66	29	64	39	0	48	11	1.40
340610--340999	199	1.9	203	81	4	468	48	5	8	37	1.56
342318--342489	43	3.8	43	77	19	199	56	1	9	31	1.42
342327--342541	93	2.3	93	99	0	421	53	1	10	33	1.46
342998--343023	3	8.7	3	100	0	52	69	0	30	0	0.89
343702--343740	10	4.1	10	87	12	55	53	0	0	46	1.00
348243--348276	11	3.1	11	86	0	50	32	2	2	61	1.26
348241--348284	14	3.0	14	87	12	54	31	2	2	63	1.19
348719--348770	10	5.0	10	76	4	50	57	0	0	42	0.98
348718--348779	16	3.9	16	79	8	72	59	1	0	38	1.07
352021--352076	22	2.5	23	75	13	62	62	1	7	28	1.32
353221--353263	21	2.0	21	86	8	61	41	0	0	58	0.98
354210--354242	2	16.5	2	100	0	66	48	0	0	51	1.00
358063--358124	8	7.8	8	86	13	92	11	0	11	77	1.00
358053--358125	16	4.5	16	86	11	96	10	1	10	76	1.08
358460--359275	272	3.0	272	93	0	1429	34	19	10	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361544--361597	21	2.7	19	85	5	72	37	12	16	33	1.87
361544--361692	19	8.7	19	67	25	100	32	12	20	34	1.90
361566--361700	32	4.2	32	97	0	252	31	11	22	34	1.90
362050--362117	19	3.9	19	72	21	67	38	11	11	38	1.79
362052--362114	32	2.0	32	90	0	99	38	12	12	36	1.82
362157--362182	13	2.0	13	100	0	52	30	15	15	38	1.88
362137--362203	33	2.0	33	88	0	98	25	14	16	43	1.86
364534--364665	50	2.6	49	81	10	149	32	24	9	34	1.87
364656--364725	28	2.5	28	86	9	90	24	32	15	27	1.95
374986--375075	46	2.0	46	100	0	180	26	12	20	41	1.87
376345--376372	13	2.2	13	100	0	56	21	0	14	64	1.29
389751--389824	21	3.6	20	83	7	60	39	10	16	33	1.83
389768--389824	20	2.8	20	86	2	78	36	10	19	33	1.86
392314--392414	32	3.1	32	88	1	139	34	7	18	38	1.80
392452--392476	13	1.9	13	100	0	50	32	16	16	36	1.90
399427--399451	13	1.9	13	100	0	50	40	8	16	36	1.77
399477--399528	13	3.5	13	73	26	50	34	19	13	32	1.90
399485--399547	19	3.6	19	74	24	75	33	19	12	34	1.89
399477--399547	32	2.2	32	97	0	133	33	19	12	33	1.90
400330--400787	49	9.6	49	77	6	422	31	15	26	26	1.96
400464--400541	39	2.0	39	84	0	102	25	19	24	30	1.98
400833--401026	29	6.7	29	83	4	225	23	13	32	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400825--401026	86	2.3	86	84	5	255	23	15	31	29	1.95
408882--409062	52	3.5	52	95	0	308	29	17	17	35	1.93
409133--409201	32	2.1	33	91	2	113	36	15	11	36	1.84
411263--411319	13	3.9	13	76	24	60	35	14	17	33	1.90
411243--411373	32	4.1	32	93	1	226	32	12	18	35	1.89
411241--411370	19	7.8	18	69	29	101	32	13	17	36	1.88
411413--411437	13	1.9	13	100	0	50	32	16	16	36	1.90
411446--411572	52	2.4	52	93	0	200	37	18	16	28	1.92
423648--423701	20	2.7	20	100	0	108	35	14	14	35	1.88
423738--423765	13	2.2	13	100	0	56	39	17	14	28	1.89
423810--423880	32	2.2	32	89	0	115	33	18	12	35	1.89
423837--423861	13	1.9	13	100	0	50	32	8	16	44	1.76
423818--423878	19	3.6	18	72	25	60	32	16	13	37	1.87
424615--424729	20	5.6	20	70	21	78	42	14	13	29	1.84
427262--427305	21	2.1	21	83	8	54	25	31	4	38	1.76
429108--429133	13	2.0	13	100	0	52	38	15	15	30	1.88
431208--431238	15	2.1	15	93	0	53	12	22	16	48	1.80
433033--433077	21	2.1	21	84	8	56	22	20	4	53	1.63
435299--435324	13	2.0	13	100	0	52	30	15	15	38	1.88
435279--435342	32	2.0	33	87	9	96	29	14	17	39	1.88
438992--439255	104	2.5	105	76	6	257	38	15	22	23	1.92
438932--439735	52	15.6	51	69	12	197	36	14	24	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439759--439879	33	3.7	33	77	3	120	19	18	31	30	1.96
439748--439902	65	2.4	64	78	6	161	21	16	32	29	1.95
439915--440983	27	36.2	27	70	16	361	33	12	30	23	1.92
439910--440624	60	12.0	60	73	14	403	34	12	30	22	1.91
440009--440094	33	2.6	33	87	3	111	34	12	27	24	1.92
439915--440241	180	1.8	180	84	4	453	34	12	30	22	1.91
440155--440983	87	9.4	84	71	17	372	33	12	30	23	1.92
440318--440396	33	2.4	33	87	6	106	30	11	31	26	1.91
440429--440981	60	9.6	53	72	13	169	33	12	30	24	1.91
440596--440917	60	5.4	60	78	11	292	33	12	29	24	1.92
440609--440831	120	1.9	119	86	4	324	33	11	29	25	1.91
440857--440950	33	2.8	33	82	9	102	34	11	30	23	1.91
440890--441042	60	2.5	62	78	13	156	36	12	30	20	1.89
441990--442104	54	2.2	53	88	1	167	15	13	28	42	1.84
447361--447475	51	2.3	50	89	5	187	32	6	29	31	1.84
447409--447900	79	6.2	80	76	6	405	34	13	24	27	1.93
447409--447900	238	2.1	237	81	8	565	34	13	24	27	1.93
447857--447926	28	2.5	28	88	0	95	27	17	30	25	1.97
447883--448039	79	2.0	79	87	0	224	29	12	29	27	1.93
450365--450442	20	3.8	20	76	6	66	37	11	11	39	1.78
451052--451698	61	10.5	61	81	5	683	28	18	26	26	1.98
451042--451698	183	3.5	184	83	4	768	29	17	27	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452689--452728	11	3.5	11	96	3	71	0	0	10	90	0.47
452677--452728	25	2.1	25	85	7	70	1	3	7	86	0.76
454650--454780	49	2.6	50	90	1	192	27	16	15	41	1.88
457079--457461	79	4.9	79	79	5	361	27	27	13	31	1.94
458572--458598	14	1.9	14	100	0	54	29	11	14	44	1.80
458435--458741	159	1.9	157	98	1	587	31	14	16	37	1.89
460291--460388	33	3.0	33	90	0	151	35	17	11	35	1.85
460290--460355	20	3.7	20	67	26	65	36	16	10	36	1.84
460290--460363	20	4.1	19	69	25	61	35	16	10	37	1.83
463465--463508	20	2.1	22	91	8	74	29	9	20	40	1.83
463535--463586	20	2.7	20	85	11	72	28	13	17	40	1.87
465659--465701	20	2.1	20	86	4	59	9	30	44	16	1.79
466144--466182	13	3.0	13	96	0	69	35	15	17	30	1.91
470062--470113	21	2.5	20	78	9	59	23	9	3	63	1.41
472246--472289	20	2.1	22	91	8	74	29	9	20	40	1.83
472343--472368	13	2.0	13	100	0	52	30	15	15	38	1.88
472323--472386	33	2.0	32	87	9	94	28	14	17	40	1.88
472323--472386	32	2.0	33	87	9	96	28	14	17	40	1.88
476765--476811	21	2.3	21	85	3	60	23	14	4	57	1.55
479001--479065	33	2.0	33	84	6	87	33	16	12	36	1.87
481811--481836	13	2.0	13	100	0	52	30	15	15	38	1.88
481791--481854	32	2.0	33	84	9	87	29	14	15	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483833--483884	21	2.5	20	78	9	59	23	9	3	63	1.41
486094--486119	13	2.0	13	100	0	52	30	15	15	38	1.88
486074--486137	33	2.0	32	87	9	94	28	14	17	40	1.88
486074--486137	32	2.0	33	87	9	96	28	14	17	40	1.88
489912--489963	19	2.7	19	78	3	59	36	13	19	30	1.90
489951--489976	13	2.0	13	100	0	52	38	15	15	30	1.88
503873--503916	13	3.4	13	82	17	56	86	11	2	0	0.66
503870--503910	13	2.9	14	79	13	57	85	9	4	0	0.73
503875--503917	18	2.3	19	88	4	61	83	11	4	0	0.78
504943--505023	37	2.2	37	95	0	144	24	14	16	44	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12