genome.fa.s195.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold195
Parameters: 2 7 7 80 10 50 1000
Length:  1914327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  5  of  12  ( 1358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
619632--619671	20	2.0	20	85	9	55	52	22	7	17	1.69
623316--623444	52	2.5	52	96	2	233	28	18	17	34	1.94
623316--623464	52	2.9	52	89	6	230	30	18	18	33	1.94
623453--623477	13	1.9	13	100	0	50	36	16	16	32	1.90
623518--623584	33	2.0	33	88	0	98	40	14	11	32	1.83
623540--623564	13	1.9	13	100	0	50	32	16	16	36	1.90
624646--624894	124	2.0	125	96	0	464	35	18	19	26	1.95
627005--627055	11	4.7	10	84	15	66	0	21	0	78	0.75
627004--627055	24	2.3	23	90	9	81	0	21	0	78	0.74
628504--628592	31	2.9	31	74	0	97	17	25	29	26	1.98
628553--628614	31	2.0	32	83	3	81	17	17	33	30	1.94
628581--629076	28	17.5	27	85	5	490	21	16	29	32	1.95
628581--629077	57	8.8	56	82	5	488	21	16	28	32	1.95
628581--629077	29	17.5	28	85	5	485	21	16	28	32	1.95
634122--634209	30	2.9	30	87	3	131	36	10	13	39	1.79
634135--634182	13	3.4	13	76	20	51	39	10	12	37	1.77
634226--634267	21	2.0	21	100	0	84	42	9	19	28	1.82
634254--634315	13	5.2	13	77	15	71	33	12	17	35	1.88
634233--634314	34	2.4	34	100	0	164	36	12	17	34	1.87
636684--637091	78	5.2	78	87	4	536	26	25	15	32	1.95
636683--637091	79	5.2	79	87	3	549	26	25	15	32	1.95
637050--637121	28	2.6	28	81	0	90	22	30	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
636968--637168	107	1.9	107	86	2	287	26	25	15	31	1.96
636997--637326	158	2.1	159	83	4	418	27	26	14	31	1.95
637207--637279	28	2.6	28	91	0	119	23	34	20	21	1.97
636969--637855	265	3.4	265	94	0	1535	27	26	14	31	1.95
637320--637383	28	2.3	28	86	0	83	23	31	17	28	1.97
637155--637432	106	2.6	107	82	2	335	26	26	15	30	1.96
637419--637693	107	2.6	107	84	0	352	27	26	16	30	1.96
637471--637543	28	2.6	28	88	0	110	24	32	20	21	1.97
637576--637650	28	2.7	28	87	0	114	20	29	24	26	1.99
637527--637936	158	2.6	158	85	0	570	28	27	14	30	1.95
637735--637807	28	2.6	28	91	0	119	28	31	16	23	1.96
650442--650506	11	5.7	11	72	13	51	83	6	10	0	0.82
651466--652194	61	12.4	61	79	8	635	24	26	22	26	2.00
651463--652194	116	6.2	116	81	10	689	24	26	21	26	2.00
652210--652324	42	2.7	44	78	11	123	21	24	13	40	1.90
653056--653143	30	2.9	30	91	3	140	36	11	13	38	1.81
653056--653135	13	5.1	17	70	25	68	37	11	12	38	1.79
653160--653201	21	2.0	21	95	0	75	42	11	19	26	1.85
656013--656130	52	2.3	52	92	0	191	28	16	17	36	1.93
656013--656150	52	2.7	52	84	4	163	29	16	18	34	1.93
656139--656163	13	1.9	13	100	0	50	36	16	16	32	1.90
656227--656251	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
656205--656271	33	2.0	33	88	0	98	40	13	11	34	1.81
656466--656510	23	2.0	23	95	0	81	24	40	13	22	1.90
660454--660489	13	2.8	13	86	0	54	33	16	13	36	1.89
664202--664350	52	2.9	51	87	4	217	30	17	17	34	1.93
664339--664363	13	1.9	13	100	0	50	36	16	16	32	1.90
664404--664470	33	2.0	33	88	0	98	40	14	11	32	1.83
664426--664450	13	1.9	13	100	0	50	32	16	16	36	1.90
664665--664708	23	1.9	23	90	0	70	22	40	13	22	1.89
665293--665488	52	3.9	52	76	13	194	33	16	25	25	1.96
665384--665473	43	2.1	43	93	0	153	31	17	24	26	1.97
665484--665623	30	4.9	29	85	7	169	19	18	30	32	1.96
667065--667108	23	1.9	23	90	0	70	22	40	13	22	1.89
667677--667888	52	4.2	52	74	12	190	33	16	24	25	1.95
667784--667873	43	2.1	43	91	0	144	31	16	24	27	1.97
667884--668023	30	4.9	29	83	7	160	19	18	29	32	1.96
669465--669508	23	1.9	23	90	0	70	22	40	13	22	1.89
670077--670288	52	4.2	52	75	12	199	33	16	24	25	1.96
670184--670273	43	2.1	43	93	0	153	31	17	24	26	1.97
670284--670423	30	4.9	29	85	7	169	19	18	30	32	1.96
671865--671908	23	1.9	23	90	0	70	22	40	13	22	1.89
672477--672688	52	4.2	52	75	12	190	33	16	24	25	1.95
672584--672673	43	2.1	43	91	0	144	31	16	24	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
672684--672823	30	4.9	29	85	7	169	19	18	30	32	1.96
674265--674308	23	1.9	23	90	0	70	22	40	13	22	1.89
674877--675088	52	4.2	52	75	12	199	33	16	24	25	1.96
674984--675073	43	2.1	43	93	0	153	31	17	24	26	1.97
675084--675223	30	4.9	29	85	7	169	19	18	30	32	1.96
676664--676707	23	1.9	23	90	0	70	22	40	13	22	1.89
677276--677487	52	4.2	52	75	12	199	33	16	24	25	1.96
677383--677472	43	2.1	43	93	0	153	31	17	24	26	1.97
677483--677622	30	4.9	29	85	7	169	19	18	30	32	1.96
679064--679107	23	1.9	23	90	0	70	22	40	13	22	1.89
683738--683762	3	8.3	3	100	0	50	32	36	0	32	1.58
685275--685300	13	2.0	13	100	0	52	38	15	15	30	1.88
685347--685374	13	2.2	13	100	0	56	28	14	17	39	1.89
685327--685392	33	2.0	33	88	5	98	30	15	13	40	1.85
691108--691184	21	3.7	21	89	0	118	37	11	14	36	1.82
691244--691306	19	3.7	18	76	24	73	33	12	17	36	1.88
691263--691287	13	1.9	13	100	0	50	36	16	16	32	1.90
691242--691314	32	2.3	32	97	0	137	34	12	17	35	1.88
691331--691371	21	2.0	21	100	0	82	43	9	19	26	1.82
693730--693917	52	3.6	51	86	5	261	29	27	11	31	1.92
693897--693971	27	2.7	27	89	6	107	24	33	20	22	1.97
693924--694099	79	2.2	80	84	1	228	28	27	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
694050--694150	51	2.0	51	88	3	150	32	27	8	30	1.87
694162--694339	79	2.3	79	80	9	195	26	26	14	32	1.95
693795--694418	237	2.6	238	81	7	721	27	27	13	31	1.94
700556--700786	61	3.9	61	80	12	291	25	28	20	25	1.99
700828--701125	61	5.1	59	86	6	355	25	29	19	25	1.99
700654--700944	155	1.9	155	88	1	440	25	29	20	24	1.99
700621--701005	216	1.8	209	88	5	583	25	28	20	25	1.99
700809--701113	55	5.3	56	86	6	368	26	28	20	23	1.99
700556--701269	326	2.2	329	86	4	965	25	29	19	25	1.99
704941--704967	13	2.1	13	100	0	54	40	14	14	29	1.86
704922--705076	34	4.3	35	71	18	122	38	14	16	30	1.88
705018--705077	13	5.0	13	76	15	67	35	13	16	35	1.88
705011--705077	34	2.0	34	100	0	134	38	11	17	31	1.87
705756--705896	30	4.6	31	86	6	200	24	30	14	29	1.95
705761--705896	61	2.2	60	88	5	202	25	30	15	27	1.96
705880--706152	34	7.9	34	83	8	313	23	34	9	32	1.88
705873--706150	71	4.0	71	85	6	356	23	33	9	33	1.87
705756--706185	32	13.1	32	81	10	309	23	32	11	32	1.91
705845--706231	101	3.9	96	78	9	271	23	33	10	32	1.89
706267--709115	43	60.1	45	77	13	2261	24	26	18	30	1.98
706267--709115	91	30.0	93	85	7	2505	24	26	18	30	1.98
706278--709115	329	8.6	329	83	8	2959	24	26	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
706952--707019	21	3.2	21	67	19	59	27	29	14	27	1.95
708851--708918	21	3.2	21	65	19	50	27	26	16	29	1.97
708873--709223	52	6.9	50	77	7	323	25	24	16	33	1.96
709849--709902	21	2.6	21	100	0	108	35	12	18	33	1.89
714780--714807	13	2.2	13	100	0	56	35	0	14	50	1.43
721853--721923	20	3.5	21	80	3	65	38	14	14	33	1.86
721963--722014	20	2.5	21	84	9	63	32	19	13	34	1.90
723428--723490	21	2.9	23	81	15	80	33	12	17	36	1.88
724524--724961	228	1.9	228	96	0	813	32	17	12	37	1.87
725122--725170	23	2.1	24	82	17	59	71	8	16	4	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12