genome.fa.s195.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold195
Parameters: 2 7 7 80 10 50 1000
Length:  1914327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  8  of  12  ( 1358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1019534--1019610	21	3.7	21	89	3	111	35	12	16	35	1.88
1019687--1019712	13	2.0	13	100	0	52	30	15	15	38	1.88
1019666--1019733	33	2.1	33	88	0	100	25	14	16	44	1.85
1022074--1022459	52	7.4	51	71	13	241	29	26	12	31	1.93
1022183--1022255	27	2.6	28	85	12	98	23	34	21	20	1.97
1022447--1022518	28	2.6	28	88	0	99	22	34	19	23	1.96
1022069--1022568	263	1.9	263	90	2	808	28	27	13	30	1.94
1022472--1022676	79	2.6	79	81	3	216	24	29	16	29	1.97
1034979--1035032	20	2.8	18	81	10	63	87	7	5	0	0.68
1034990--1035033	13	3.4	13	87	6	63	88	9	2	0	0.59
1036006--1037121	61	19.3	59	86	8	1295	26	29	20	23	1.99
1036006--1037121	176	6.4	173	85	8	1379	26	29	20	23	1.99
1036949--1037099	47	3.0	48	84	13	198	29	29	20	19	1.97
1037105--1037193	42	2.1	42	83	4	108	20	24	13	41	1.88
1037867--1037892	13	2.0	13	100	0	52	30	15	15	38	1.88
1040246--1040376	51	2.5	53	84	8	178	31	25	10	32	1.90
1040243--1040388	51	2.9	49	82	10	152	30	27	10	32	1.90
1040391--1040612	52	4.3	51	77	5	203	29	24	13	32	1.93
1040598--1040671	28	2.6	28	85	10	98	24	33	18	22	1.97
1040705--1040759	28	1.9	29	88	3	85	20	23	20	36	1.95
1040625--1040828	79	2.6	79	79	3	207	25	29	15	29	1.96
1043379--1043430	20	2.6	20	87	0	77	36	15	15	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1052197--1052221	13	1.9	13	100	0	50	36	16	16	32	1.90
1054857--1054905	24	2.0	24	84	8	62	77	2	16	4	1.01
1055850--1056074	57	3.9	57	81	6	249	28	10	16	44	1.81
1055849--1056074	115	2.0	115	84	3	294	28	10	17	43	1.81
1055862--1056107	115	2.1	115	80	3	264	28	10	16	44	1.81
1061393--1061464	32	2.2	32	95	0	126	36	11	16	36	1.84
1061372--1061457	19	4.7	19	71	19	67	34	10	16	38	1.83
1061509--1061534	13	2.0	13	100	0	52	30	15	15	38	1.88
1061489--1061555	34	2.0	33	91	2	107	26	16	11	44	1.82
1063871--1064006	52	2.6	52	80	6	168	30	26	10	33	1.89
1063994--1064063	28	2.5	28	83	4	79	22	32	18	25	1.97
1064020--1064221	79	2.6	78	82	8	223	24	27	17	31	1.97
1073887--1073936	20	2.5	20	80	3	57	40	16	14	30	1.87
1073925--1073949	13	1.9	13	100	0	50	36	16	16	32	1.90
1074844--1074889	19	2.5	18	89	6	74	47	17	2	32	1.60
1079064--1079317	79	3.2	79	81	6	291	29	13	27	28	1.94
1079252--1079373	51	2.3	53	86	5	169	32	10	22	33	1.89
1081740--1081781	21	2.0	21	95	0	75	28	16	9	45	1.79
1081807--1081927	19	7.0	18	69	26	93	36	16	12	34	1.86
1081825--1081881	13	3.9	13	76	24	60	33	17	14	35	1.90
1081798--1081902	32	3.3	32	97	0	192	35	18	13	33	1.89
1081959--1082014	21	2.7	21	94	0	94	37	14	10	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1082295--1082347	20	2.7	20	91	2	81	35	18	13	32	1.90
1085206--1086244	520	2.0	519	92	0	1731	37	17	16	28	1.91
1086541--1086594	20	2.8	19	88	8	74	37	18	14	29	1.91
1089084--1089123	13	3.1	13	96	0	71	37	15	17	30	1.90
1095348--1095399	19	2.7	19	84	3	59	40	13	17	28	1.87
1095835--1095889	20	2.8	20	86	2	76	38	12	10	38	1.79
1095927--1095977	20	2.5	20	84	6	59	33	15	15	35	1.90
1096009--1096063	19	2.8	20	86	5	76	38	18	12	30	1.88
1096799--1096855	28	2.0	28	100	0	114	26	14	28	31	1.94
1099243--1099267	13	1.9	13	100	0	50	36	16	16	32	1.90
1100379--1100660	79	3.6	79	84	3	293	34	12	24	28	1.92
1100594--1100694	51	2.0	51	92	0	166	32	10	26	29	1.90
1100729--1101059	79	4.2	80	81	5	314	34	12	25	28	1.92
1100719--1101061	158	2.2	159	80	4	388	34	11	24	28	1.91
1103439--1103534	50	1.9	50	93	0	165	43	13	17	25	1.85
1104210--1104511	42	7.5	42	72	10	200	43	13	22	20	1.87
1104137--1104403	115	2.3	115	85	2	347	44	14	21	19	1.85
1104339--1104511	41	4.1	42	79	10	174	43	11	24	20	1.85
1110423--1110535	50	2.2	50	79	4	129	34	14	10	40	1.80
1120845--1120913	1	69.0	1	76	0	57	86	8	1	2	0.72
1120847--1120903	30	1.9	30	88	0	87	87	7	1	3	0.71
1120845--1120913	21	3.2	21	85	6	77	86	8	1	2	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1120845--1120913	20	3.4	20	84	9	86	86	8	1	2	0.72
1122350--1122412	27	2.3	27	86	5	83	23	28	14	33	1.94
1122415--1122503	31	2.8	31	86	1	124	29	30	19	21	1.97
1122687--1122786	52	1.9	52	87	4	148	25	21	14	40	1.90
1122516--1122786	114	2.4	113	81	3	330	25	22	14	37	1.92
1122760--1122890	52	2.5	53	80	9	137	23	21	16	38	1.93
1123756--1123887	50	2.6	51	84	5	171	34	15	9	39	1.81
1127844--1128164	79	4.1	78	80	4	347	33	13	25	27	1.93
1127852--1128164	158	2.0	158	87	1	448	33	13	25	28	1.93
1134881--1135088	30	6.7	31	77	11	178	25	30	15	28	1.96
1134881--1135094	61	3.5	59	75	12	207	24	30	14	30	1.95
1134908--1135552	32	20.9	32	72	12	379	24	28	12	34	1.92
1134881--1135271	124	3.2	123	80	7	393	24	30	14	30	1.94
1134881--1135552	91	7.3	91	75	7	452	24	28	12	34	1.92
1134911--1135548	62	10.3	61	73	11	308	25	27	12	34	1.92
1135032--1135550	185	2.8	186	76	8	524	25	27	12	34	1.92
1135768--1135820	20	2.6	20	84	3	61	39	13	15	32	1.85
1138255--1138311	25	2.4	22	78	21	62	35	26	7	31	1.83
1139303--1139422	29	4.2	28	78	12	95	23	28	15	33	1.94
1139303--1139422	56	2.1	58	81	9	140	23	28	15	33	1.94
1139325--1139436	30	3.9	29	79	16	83	25	28	16	29	1.97
1139462--1139763	33	9.4	32	79	7	283	32	28	16	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1139462--1139763	31	9.5	31	77	7	248	32	28	16	22	1.96
1139473--1139758	64	4.5	63	79	9	260	31	29	15	23	1.95
1139842--1140107	52	5.1	52	75	8	218	23	23	17	35	1.95
1140822--1140938	52	2.3	52	89	1	173	28	16	12	42	1.84
1140905--1140975	20	3.5	20	92	0	115	30	16	14	38	1.89
1141386--1141412	13	2.1	13	100	0	54	22	29	7	40	1.81
1143378--1143440	27	2.3	27	94	0	108	26	33	15	23	1.95
1147187--1147370	52	3.5	52	84	0	224	35	16	16	31	1.91
1147495--1147856	50	7.2	49	72	6	174	37	15	19	28	1.92
1147512--1147882	200	1.9	200	82	7	468	38	15	18	28	1.91
1147512--1147984	200	2.4	200	78	7	451	37	15	19	27	1.92
1148965--1149033	21	3.3	21	76	15	63	46	13	13	27	1.79
1148972--1149013	20	2.2	19	91	4	66	42	11	14	30	1.81
1149070--1149208	51	2.7	52	87	3	174	29	14	13	42	1.84
1149070--1149208	52	2.7	51	87	3	172	29	14	13	42	1.84
1150903--1151162	79	3.3	78	81	2	279	26	24	11	37	1.89
1150968--1151198	79	2.9	79	77	8	229	27	25	10	36	1.88
1152794--1152819	7	3.7	7	100	0	52	15	30	0	53	1.42
1159932--1159987	19	2.9	19	86	2	76	35	14	19	30	1.91
1159972--1159998	13	2.1	13	100	0	54	40	14	14	29	1.86
1162500--1162539	13	3.1	13	81	0	53	45	15	5	35	1.68
1169683--1169896	62	3.5	62	80	3	252	16	22	28	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1169683--1169896	31	6.9	31	71	6	166	16	22	28	32	1.96
1170162--1170304	41	3.4	41	73	9	135	43	9	25	20	1.83
1177081--1177152	36	2.0	36	100	0	144	41	16	16	25	1.89
1180330--1180389	13	5.1	13	69	22	60	38	13	18	30	1.89
1180344--1180408	20	3.6	19	73	26	70	35	13	20	30	1.91
1180331--1180408	33	2.4	33	97	0	147	35	14	19	30	1.91
1186562--1186630	33	2.1	33	86	5	95	42	18	8	30	1.81
1186587--1186614	13	2.2	13	100	0	56	46	14	7	32	1.71
1186592--1186630	20	2.0	20	84	0	51	48	17	5	28	1.68
1186658--1186710	19	2.7	19	88	11	81	32	16	16	33	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12