genome.fa.s195.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold195
Parameters: 2 7 7 80 10 50 1000
Length:  1914327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1855906--1856486	266	2.2	266	98	0	1108	35	15	24	24	1.94
1856353--1856670	43	6.9	45	80	11	378	31	18	25	24	1.98
1856309--1856670	92	3.9	92	97	1	643	31	18	25	24	1.97
1856695--1856836	55	2.6	55	80	3	164	33	16	23	26	1.95
1856909--1858186	71	18.5	69	87	6	1622	34	11	33	20	1.89
1856896--1858224	33	38.5	35	84	8	1560	34	11	33	20	1.89
1856921--1858189	176	7.3	174	90	5	1727	34	11	33	20	1.89
1859480--1859553	1	74.0	1	78	0	76	2	0	8	89	0.58
1859480--1859553	11	6.6	11	83	13	89	2	0	8	89	0.58
1859474--1859552	32	2.4	33	89	4	124	3	1	8	86	0.75
1866444--1866563	52	2.3	51	94	4	206	30	18	18	33	1.95
1866444--1866583	52	2.7	52	85	5	169	30	18	18	32	1.95
1866572--1866596	13	1.9	13	100	0	50	36	16	16	32	1.90
1866658--1866682	13	1.9	13	100	0	50	32	16	16	36	1.90
1866637--1866702	32	2.0	33	88	2	98	39	13	12	34	1.82
1872524--1872549	13	2.0	13	100	0	52	30	15	15	38	1.88
1872505--1872568	33	2.0	33	90	3	103	28	14	17	40	1.88
1877709--1877749	15	2.7	15	88	0	64	26	53	7	12	1.64
1877850--1877906	27	2.1	27	90	0	87	28	43	1	26	1.65
1878265--1878386	39	3.2	39	63	11	99	27	7	22	42	1.80
1878209--1878452	75	3.3	75	92	1	400	30	8	21	39	1.83
1879811--1879846	18	2.0	18	89	10	56	66	2	0	30	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1879949--1880024	23	3.2	25	78	12	79	46	1	3	48	1.29
1881567--1881631	30	2.2	31	79	17	77	58	1	1	38	1.17
1884707--1884757	2	25.5	2	95	0	93	49	1	0	49	1.12
1887882--1887944	30	2.1	30	100	0	126	33	9	9	47	1.68
1891999--1892051	20	2.7	20	88	11	74	30	18	13	37	1.89
1892103--1892129	13	2.1	13	100	0	54	40	14	14	29	1.86
1894593--1894621	13	2.2	13	100	0	58	41	17	13	27	1.87
1900474--1900516	18	2.3	18	88	4	59	39	13	13	32	1.85
1902165--1902206	20	2.1	21	86	8	61	54	2	2	40	1.26
1902930--1902996	21	3.2	20	76	18	57	37	0	5	56	1.24
1902921--1903117	72	2.8	72	82	11	230	37	1	6	55	1.33
1903240--1903278	20	2.0	20	84	0	51	33	0	10	56	1.33
1903373--1903415	22	1.9	23	85	4	61	46	0	4	48	1.22
1905991--1906017	14	1.9	14	100	0	54	33	14	7	44	1.73
1910983--1911023	16	2.6	15	84	7	55	73	0	26	0	0.84
1910983--1911021	15	2.5	16	91	4	62	74	0	25	0	0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!